Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003176

Physical Location & Seq

Genomic Coordinates Reverse (-)

15059799 .. 15061972

Gene Structure 2174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43516

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1983 bp

ATGAATACCCAACGGGCCCCACTGGTCTTCACAAAACAGCCCTACATTGAACAAGAAGACCACCGGAGAATAGCCCAATGGGAATTCAATGCTCTTTCCCAGTCGGAGATCTCCAAAATGGCGGAGGCCCAAATCTTCGAAGGCAAGTACTACGATTCCGCCACCGGAAAACCCATCCAAGGCGGGTTACTGGACCCCAGATTGGGCCCTGCGAATCGCCAGAGTGGCAACTGCGCCACTTGCTCTGCAAAACTCTCCGACTGCCCGGGGCACTTTGGGTATTTCATGCTTTCCCTCCCTGTTTTCAATGTTGGGTATTTGAATGTGGTTGTGGACATTTTGAAGTGCATCTGTAAAATGTGCTCTAGAATTCTTTTGGATGAGAAACTGAGAAGCAAGAAGGAGTCGATGAAGGACATGAAATCGATAGTGAAGGAGTGTGTTAAGCCCTTGACGAATCATAGAGCCGTGGAGTGCTCCCATTGTGGGTATACAAATGGCAATGTGAGAAGGGTTCCGGGGGATGTGGGAATTCAACACGATCATTCGGAACGAACTGTTAATGGTGTTGTGGTAGATGAGTATAAGTCGGCGATACTTGACAAGGGAGTCATTAATATGCAACAAATTTTTTTGCTTGACCCTGCTAGAGTTTATTCTCTGTTTAGGAAGATGCTTGATGTGGATTGCCGGTTTCTGTGTCTTAAAACTCGACCGGAGAATCTCCTGTTGACTTGCATTCTTGTGCCGCCGATAGCTATTCGGCCTTCGGTTCTTGTGGGTGGATCACAGAGTAATGAGGATGATGTGACTGTGAGGCTGAAGAGGATTATTCAAGCAAATGCGAAACTTCGACTGCAGCTATCATCTGCAGGAAGTTCCTCTGCTGTGTCATTGTCTTGTTGGGAGGAGCTTCAGATTGAGGTTGCACAGTATATAAATAGTGACGCTCGTGTACACCTTCCGCCGAGCTTGAGAGCTCAACAACCTACCAAGCCATTGAGTGGTTTGGTGCAGCGCCTCAAAGGGAAGACGGGGCGGTTTCGTGGTACTTTGAGTGGGAAGCGTGTTGAATATACTGGGAGAAGTGTTATATCACCGGACCCTAATCTGAAAATTACTGAGGTTGGAATCCCTATGGAAATGGCTACAATTTTGAGTTATCCAGAACGTGTTTCCAAGCATAATATTGACAAGTTGAGGCTGTGTGTTAGTAATGGGCCTTATAAGTACCCAGGTGCCAAAATGTTGAGAAATCATGACGGCTCTGAGTTCACCTTGAAGGTTAACAGACAGGGCCGTGCTCGTGGACTCAAATGTGGTGACATAGTTGATCGGCATTTAGAAGACGGGGACATTGTTCTTTTCAACAGGCAACCGAGCTTGCATCGGATGTCTGTCATGTGTCATAGGGCAAGGATTATGCCACATTCGAGGACATTGAGGTTTAATGAATCTGTTTGCAACCCGTATAATGCTGATTTTGATGGTGATGAAATGAATATTCATGTCCCACAAACTGAGGAGGCTCGTGCTGAGGCGCTTATGTTGATGGGGGTGCATAATAATCTATGCACTCCGAAAAATGGAGAGATTTTGGTTGCCTCCACTCAAGATTTTCTAACTTCTTCTTTCCTTATAACAAGGAAGGACACATTTTATGACCGTGCATCTTTTTCACTCCTGTGTTCGTATATGGTTGATGGCAAGGCTTCTGTTGATTTGCCAACACCTGCTGTAGTTAAGCCAGTAGAGCTCTGGACAGGTAAGCAGCTATTTAATGTTTTAGTACGCCCAAACTCAAATGTGAGAGTCTATCTAAATCTTATTGTTAGGGAGAAATCTTACACCTCCGCCAGGACTGAGGATGGAAGAGAAACAGAAGCAATGTGCCCAAACGATGGTTTTGAAATGGCAATAAGGATGGACTTTACTCTGTTCTTCTCAGAGACTATAAAGCTCATGCTGCTGCTTCTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002376 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0046483 GO:0048518 GO:0050789 GO:0050896 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

660

Amino Acids

74.16

Weight (kDa)

8.95

Isoelectric Point (pI)

42.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	22 - 352	1.1e-69	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	354 - 520	3.2e-72	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	523 - 635	1.5e-17	RNA polymerase Rpb1, domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60040 AT5G60040
fragaria_vesca	FvH4_3g34290 FvH4_3g34290 FvH4_3g34290 FvH4_6g15631
malus_domestica	MD03G1106800.v1.1 MD09G1157000.v1.1
prunus_persica	Prupe.6G089600_v2.0.a1 Prupe.6G089600_v2.0.a1
pyrus_communis	pycom03g08620 pycom09g07570
rosa_chinensis	RchiOBHm_Chr3g0469301 RchiOBHm_Chr3g0469321 RchiOBHm_Chr5g0061861
rosa_laevigata	RLG00000024360 RLG00000035511
rosa_multiflora	Rmu_sc0004134.1_g000001 Rmu_sc0011641.1_g000013 Rmu_sc0011641.1_g000015 Rmu_sc0019271.1_g000001 Rmu_sc0022191.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018870 Rroxscaffold_6G00411990 Rroxscaffold_6G00412000
rosa_rugosa	Rorug03G0100400 Rorug05G0344900 Rorug05G0345000
rosa_samantha	Rh3AG149800 Rh3BG173400 Rh3CG164500 Rh3DG202000 Rh5AG405500 Rh5BG418300 Rh5CG442800 Rh5DG432400
rosa_wichuraiana	Rw5G038070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1227, 1640
AarI	CACCTGC	1 cut(s)	1741
AasI	GACNNNNNNGTC	1 cut(s)	608
Acc36I	ACCTGC	1 cut(s)	1741
AccB1I	GGYRCC	1 cut(s)	1238
AccB7I	CCANNNNNTGG	2 cut(s)	1004, 1901
AccI	GTMKAC	1 cut(s)	491
AciI	CCGC	7 cut(s)	122, 159, 183, 749, 965, 1039, 1854
AclWI	GGATC	1 cut(s)	793
AcsI	RAATTY	4 cut(s)	83, 369, 531, 627
AcuI	CTGAAG	2 cut(s)	842, 899
AfaI	GTAC	5 cut(s)	149, 957, 1051, 1232, 1791
AfiI	CCNNNNNNNGG	8 cut(s)	179, 202, 203, 486, 1004, 1586, 1857, 1901
AflIII	ACRYGT	1 cut(s)	1171
AjnI	CCWGG	2 cut(s)	1234, 1856
AleI	CACNNNNGTG	1 cut(s)	1684
AluBI	AGCT	9 cut(s)	758, 862, 913, 972, 980, 1383, 1756, 1774, 1960
AluI	AGCT	9 cut(s)	758, 862, 913, 972, 980, 1383, 1756, 1774, 1960
Alw21I	GWGCWC	5 cut(s)	365, 479, 982, 1306, 1758
Alw26I	GTCTC	1 cut(s)	1943
AlwI	GGATC	1 cut(s)	793
Ama87I	CYCGRG	1 cut(s)	265
AoxI	GGCC	6 cut(s)	15, 126, 205, 764, 1220, 1297
ApaI	GGGCCC	2 cut(s)	19, 209
ApeKI	GCWGC	5 cut(s)	859, 1015, 1771, 1966, 1969
ApoI	RAATTY	4 cut(s)	83, 369, 531, 627
AseI	ATTAAT	1 cut(s)	615
AspLEI	GCGC	3 cut(s)	236, 1020, 1543
AspS9I	GGNCC	9 cut(s)	15, 16, 127, 193, 205, 206, 1102, 1220, 1297
AsuC2I	CCSGG	3 cut(s)	266, 267, 519
AsuHPI	GGTGA	4 cut(s)	1089, 1267, 1334, 1502
AsuII	TTCGAA	1 cut(s)	138
AvaI	CYCGRG	1 cut(s)	265
AvaII	GGWCC	2 cut(s)	193, 1102
BaeGI	GKGCMC	4 cut(s)	19, 209, 273, 1895
BanI	GGYRCC	1 cut(s)	1238
BanII	GRGCYC	4 cut(s)	19, 209, 982, 1758
BauI	CACGAG	3 cut(s)	951, 1305, 1530
BbsI	GAAGAC	4 cut(s)	19, 63, 1037, 1353
Bbv12I	GWGCWC	5 cut(s)	365, 479, 982, 1306, 1758
BbvCI	CCTCAGC	1 cut(s)	1536
BbvI	GCAGC	5 cut(s)	871, 1027, 1783, 1953, 1956
BccI	CCATC	7 cut(s)	182, 1481, 1546, 1697, 1862, 1895, 1918
BceAI	ACGGC	3 cut(s)	452, 1279, 1284
BciT130I	CCWGG	2 cut(s)	1236, 1858
BcnI	CCSGG	3 cut(s)	266, 267, 519
BcoDI	GTCTC	1 cut(s)	1943
BfaI	CTAG	2 cut(s)	366, 648
BfmI	CTRYAG	3 cut(s)	857, 870, 1737
BfoI	RGCGCY	2 cut(s)	1021, 1544
BfuAI	ACCTGC	1 cut(s)	1741
BglI	GCCNNNNNGGC	1 cut(s)	225
BglII	AGATCT	1 cut(s)	108
BisI	GCNGC	6 cut(s)	749, 860, 1016, 1772, 1967, 1970
BlsI	GCNGC	6 cut(s)	750, 861, 1017, 1773, 1968, 1971
BmcAI	AGTACT	1 cut(s)	149
Bme1390I	CCNGG	5 cut(s)	266, 267, 519, 1236, 1858
Bme18I	GGWCC	2 cut(s)	193, 1102
BmeT110I	CYCGRG	1 cut(s)	265
BmgT120I	GGNCC	9 cut(s)	15, 16, 127, 193, 205, 206, 1102, 1220, 1297
BmiI	GGNNCC	7 cut(s)	17, 18, 195, 207, 516, 1104, 1240
BmrFI	CCNGG	5 cut(s)	266, 267, 519, 1236, 1858
BmrI	ACTGGG	2 cut(s)	94, 1089
BmsI	GCATC	4 cut(s)	357, 663, 1396, 1679
BmuI	ACTGGG	2 cut(s)	94, 1089
BpiI	GAAGAC	4 cut(s)	19, 63, 1037, 1353
Bpu10I	CCTNAGC	1 cut(s)	1536
Bpu14I	TTCGAA	1 cut(s)	138
BpuEI	CTTGAG	2 cut(s)	994, 1596
BpuMI	CCSGG	3 cut(s)	266, 267, 519
Bsa29I	ATCGAT	1 cut(s)	425
BsaJI	CCNNGG	6 cut(s)	178, 265, 266, 468, 518, 1234
BsaWI	WCCGGW	4 cut(s)	63, 164, 715, 1099
Bsc4I	CCNNNNNNNGG	8 cut(s)	179, 202, 203, 486, 1004, 1586, 1857, 1901
Bse118I	RCCGGY	1 cut(s)	690
Bse1I	ACTGG	5 cut(s)	27, 100, 195, 1084, 1748
Bse3DI	GCAATG	2 cut(s)	508, 1893
BseBI	CCWGG	2 cut(s)	1236, 1858
BseCI	ATCGAT	1 cut(s)	425
BseDI	CCNNGG	6 cut(s)	178, 265, 266, 468, 518, 1234
BseGI	GGATG	7 cut(s)	174, 385, 529, 808, 1398, 1873, 1929
BseLI	CCNNNNNNNGG	8 cut(s)	179, 202, 203, 486, 1004, 1586, 1857, 1901
BseMI	GCAATG	2 cut(s)	508, 1893
BseMII	CTCAG	7 cut(s)	380, 1113, 1260, 1512, 1527, 1854, 1959
BseNI	ACTGG	5 cut(s)	27, 100, 195, 1084, 1748
BseRI	GAGGAG	2 cut(s)	923, 1538
BseSI	GKGCMC	4 cut(s)	19, 209, 273, 1895
BseXI	GCAGC	5 cut(s)	871, 1027, 1783, 1953, 1956
BsgI	GTGCAG	1 cut(s)	1034
Bsh1285I	CGRYCG	1 cut(s)	716
BshFI	GGCC	6 cut(s)	17, 128, 207, 766, 1222, 1299
BshNI	GGYRCC	1 cut(s)	1238
BshVI	ATCGAT	1 cut(s)	425
BsiEI	CGRYCG	1 cut(s)	716
BsiHKAI	GWGCWC	5 cut(s)	365, 479, 982, 1306, 1758
BsiHKCI	CYCGRG	1 cut(s)	265
BsiSI	CCGG	7 cut(s)	64, 165, 266, 518, 691, 716, 1100
BslFI	GGGAC	2 cut(s)	1367, 1496
BslI	CCNNNNNNNGG	8 cut(s)	179, 202, 203, 486, 1004, 1586, 1857, 1901
BsmAI	GTCTC	1 cut(s)	1943
BsmFI	GGGAC	2 cut(s)	1367, 1496
BsmI	GAATGC	1 cut(s)	738
BsnI	GGCC	6 cut(s)	17, 128, 207, 766, 1222, 1299
BsoBI	CYCGRG	1 cut(s)	265
Bsp119I	TTCGAA	1 cut(s)	138
Bsp120I	GGGCCC	2 cut(s)	15, 205
Bsp1286I	GDGCHC	9 cut(s)	19, 209, 273, 365, 479, 982, 1306, 1758, 1895
Bsp1407I	TGTACA	1 cut(s)	955
Bsp143I	GATC	4 cut(s)	108, 541, 785, 1333
BspACI	CCGC	7 cut(s)	122, 159, 183, 749, 965, 1039, 1854
BspANI	GGCC	6 cut(s)	17, 128, 207, 766, 1222, 1299
BspCNI	CTCAG	7 cut(s)	381, 1114, 1261, 1513, 1528, 1855, 1958
BspDI	ATCGAT	1 cut(s)	425
BspHI	TCATGA	1 cut(s)	1258
BspLI	GGNNCC	7 cut(s)	17, 18, 195, 207, 516, 1104, 1240
BspMAI	CTGCAG	2 cut(s)	861, 874
BspMI	ACCTGC	1 cut(s)	1741
BspPI	GGATC	1 cut(s)	793
BspT104I	TTCGAA	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	1238
BsrDI	GCAATG	2 cut(s)	508, 1893
BsrFI	RCCGGY	1 cut(s)	690
BsrGI	TGTACA	1 cut(s)	955
BsrI	ACTGG	5 cut(s)	27, 100, 195, 1084, 1748
BssAI	RCCGGY	1 cut(s)	690
BssECI	CCNNGG	6 cut(s)	178, 265, 266, 468, 518, 1234
BssMI	GATC	4 cut(s)	108, 541, 785, 1333
BssNAI	GTATAC	1 cut(s)	492
BssSI	CACGAG	3 cut(s)	951, 1305, 1530
BssT1I	CCWWGG	1 cut(s)	178
Bst1107I	GTATAC	1 cut(s)	492
Bst2BI	CACGAG	3 cut(s)	951, 1305, 1530
Bst2UI	CCWGG	2 cut(s)	1236, 1858
Bst4CI	ACNGT	4 cut(s)	559, 814, 933, 1667
Bst6I	CTCTTC	2 cut(s)	818, 1867
BstAUI	TGTACA	1 cut(s)	955
BstBI	TTCGAA	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	1385
BstDEI	CTNAG	7 cut(s)	389, 1122, 1269, 1521, 1536, 1863, 1945
BstDSI	CCRYGG	1 cut(s)	468
BstENI	CCTNNNNNAGG	1 cut(s)	1855
BstF5I	GGATG	7 cut(s)	174, 385, 529, 808, 1398, 1873, 1929
BstH2I	RGCGCY	2 cut(s)	1021, 1544
BstHHI	GCGC	3 cut(s)	236, 1020, 1543
BstKTI	GATC	4 cut(s)	111, 544, 788, 1336
BstMAI	GTCTC	1 cut(s)	1943
BstMBI	GATC	4 cut(s)	108, 541, 785, 1333
BstMCI	CGRYCG	1 cut(s)	716
BstMWI	GCNNNNNNNGC	4 cut(s)	225, 240, 1753, 1966
BstNI	CCWGG	2 cut(s)	1236, 1858
BstSCI	CCNGG	5 cut(s)	264, 265, 517, 1234, 1856
BstSFI	CTRYAG	3 cut(s)	857, 870, 1737
BstSLI	GKGCMC	4 cut(s)	19, 209, 273, 1895
BstV1I	GCAGC	5 cut(s)	871, 1027, 1783, 1953, 1956
BstV2I	GAAGAC	4 cut(s)	19, 63, 1037, 1353
BstX2I	RGATCY	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	108
BstZ17I	GTATAC	1 cut(s)	492
Bsu15I	ATCGAT	1 cut(s)	425
BsuRI	GGCC	6 cut(s)	17, 128, 207, 766, 1222, 1299
BsuTUI	ATCGAT	1 cut(s)	425
BtgI	CCRYGG	1 cut(s)	468
BtsCI	GGATG	7 cut(s)	174, 385, 529, 808, 1398, 1873, 1929
BtsIMutI	CAGTG	1 cut(s)	20
BveI	ACCTGC	1 cut(s)	1741
Cac8I	GCNNGC	1 cut(s)	1385
CciI	TCATGA	1 cut(s)	1258
CfoI	GCGC	3 cut(s)	236, 1020, 1543
Cfr10I	RCCGGY	1 cut(s)	690
Cfr13I	GGNCC	9 cut(s)	15, 16, 127, 193, 205, 206, 1102, 1220, 1297
Cfr9I	CCCGGG	1 cut(s)	265
ClaI	ATCGAT	1 cut(s)	425
CseI	GACGC	1 cut(s)	956
Csp6I	GTAC	5 cut(s)	148, 956, 1050, 1231, 1790
CviAII	CATG	7 cut(s)	286, 418, 1259, 1402, 1508, 1963, 1980
CviQI	GTAC	5 cut(s)	148, 956, 1050, 1231, 1790
DdeI	CTNAG	7 cut(s)	389, 1122, 1269, 1521, 1536, 1863, 1945
DpnI	GATC	4 cut(s)	110, 543, 787, 1335
DpnII	GATC	4 cut(s)	108, 541, 785, 1333
DrdI	GACNNNNNNGTC	1 cut(s)	608
DseDI	GACNNNNNNGTC	1 cut(s)	608
Eam1104I	CTCTTC	2 cut(s)	818, 1867
EarI	CTCTTC	2 cut(s)	818, 1867
EciI	GGCGGA	4 cut(s)	137, 148, 954, 1843
Ecl136II	GAGCTC	2 cut(s)	980, 1756
Eco130I	CCWWGG	1 cut(s)	178
Eco24I	GRGCYC	4 cut(s)	19, 209, 982, 1758
Eco47I	GGWCC	2 cut(s)	193, 1102
Eco53kI	GAGCTC	2 cut(s)	980, 1756
Eco57I	CTGAAG	2 cut(s)	842, 899
Eco88I	CYCGRG	1 cut(s)	265
EcoICRI	GAGCTC	2 cut(s)	980, 1756
EcoNI	CCTNNNNNAGG	1 cut(s)	1855
EcoO109I	RGGNCCY	2 cut(s)	16, 206
EcoRI	GAATTC	3 cut(s)	83, 369, 531
EcoRII	CCWGG	2 cut(s)	1234, 1856
EcoT14I	CCWWGG	1 cut(s)	178
EcoT38I	GRGCYC	4 cut(s)	19, 209, 982, 1758
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	7 cut(s)	289, 421, 1262, 1405, 1511, 1966, 1983
FaqI	GGGAC	2 cut(s)	1367, 1496
FatI	CATG	7 cut(s)	285, 417, 1258, 1401, 1507, 1962, 1979
FauI	CCCGC	1 cut(s)	176
FblI	GTMKAC	1 cut(s)	491
Fnu4HI	GCNGC	6 cut(s)	749, 860, 1016, 1772, 1967, 1970
FokI	GGATG	7 cut(s)	161, 392, 536, 815, 1405, 1880, 1936
FriOI	GRGCYC	4 cut(s)	19, 209, 982, 1758
Fsp4HI	GCNGC	6 cut(s)	749, 860, 1016, 1772, 1967, 1970
FspBI	CTAG	2 cut(s)	366, 648
GlaI	GCGC	3 cut(s)	235, 1019, 1542
GluI	GCNGC	6 cut(s)	749, 860, 1016, 1772, 1967, 1970
HaeII	RGCGCY	2 cut(s)	1021, 1544
HaeIII	GGCC	6 cut(s)	17, 128, 207, 766, 1222, 1299
HapII	CCGG	7 cut(s)	64, 165, 266, 518, 691, 716, 1100
HgaI	GACGC	1 cut(s)	956
HhaI	GCGC	3 cut(s)	236, 1020, 1543
Hin1II	CATG	7 cut(s)	289, 421, 1262, 1405, 1511, 1966, 1983
Hin6I	GCGC	3 cut(s)	234, 1018, 1541
HinP1I	GCGC	3 cut(s)	234, 1018, 1541
HincII	GTYRAC	2 cut(s)	732, 1288
HindII	GTYRAC	2 cut(s)	732, 1288
HpaI	GTTAAC	1 cut(s)	1288
HpaII	CCGG	7 cut(s)	64, 165, 266, 518, 691, 716, 1100
HphI	GGTGA	4 cut(s)	1089, 1267, 1334, 1502
Hpy166II	GTNNAC	8 cut(s)	334, 492, 732, 956, 958, 1275, 1288, 1310
Hpy188I	TCNGA	9 cut(s)	106, 259, 550, 918, 1113, 1270, 1392, 1581, 1948
Hpy188III	TCNNGA	5 cut(s)	366, 1166, 1259, 1613, 1759
Hpy8I	GTNNAC	8 cut(s)	334, 492, 732, 956, 958, 1275, 1288, 1310
HpyAV	CCTTC	9 cut(s)	134, 394, 406, 427, 504, 777, 971, 1276, 1642
HpyCH4III	ACNGT	4 cut(s)	559, 814, 933, 1667
HpyCH4IV	ACGT	1 cut(s)	1171
HpyF10VI	GCNNNNNNNGC	4 cut(s)	225, 240, 1753, 1966
HpyF3I	CTNAG	7 cut(s)	389, 1122, 1269, 1521, 1536, 1863, 1945
HpySE526I	ACGT	1 cut(s)	1171
Hsp92II	CATG	7 cut(s)	289, 421, 1262, 1405, 1511, 1966, 1983
HspAI	GCGC	3 cut(s)	234, 1018, 1541
KspAI	GTTAAC	1 cut(s)	1288
Kzo9I	GATC	4 cut(s)	108, 541, 785, 1333
LmnI	GCTCC	2 cut(s)	482, 910
Lsp1109I	GCAGC	5 cut(s)	871, 1027, 1783, 1953, 1956
LweI	GCATC	4 cut(s)	357, 663, 1396, 1679
MaeI	CTAG	2 cut(s)	366, 648
MaeII	ACGT	1 cut(s)	1171
MaeIII	GTNAC	4 cut(s)	186, 808, 944, 1322
MalI	GATC	4 cut(s)	110, 543, 787, 1335
MboI	GATC	4 cut(s)	108, 541, 785, 1333
MflI	RGATCY	1 cut(s)	108
MhlI	GDGCHC	9 cut(s)	19, 209, 273, 365, 479, 982, 1306, 1758, 1895
MluCI	AATT	6 cut(s)	83, 369, 531, 627, 1116, 1152
MlyI	GAGTC	4 cut(s)	413, 618, 1305, 1821
MmeI	TCCRAC	3 cut(s)	84, 282, 1108
MseI	TTAA	8 cut(s)	444, 561, 615, 705, 1287, 1449, 1743, 1779
MslI	CAYNNNNRTG	3 cut(s)	617, 743, 1684
MspI	CCGG	7 cut(s)	64, 165, 266, 518, 691, 716, 1100
MspR9I	CCNGG	5 cut(s)	266, 267, 519, 1236, 1858
Mva1269I	GAATGC	1 cut(s)	738
MvaI	CCWGG	2 cut(s)	1236, 1858
MwoI	GCNNNNNNNGC	4 cut(s)	225, 240, 1753, 1966
NciI	CCSGG	3 cut(s)	266, 267, 519
NdeII	GATC	4 cut(s)	108, 541, 785, 1333
NlaIII	CATG	7 cut(s)	289, 421, 1262, 1405, 1511, 1966, 1983
NlaIV	GGNNCC	7 cut(s)	17, 18, 195, 207, 516, 1104, 1240
NmeAIII	GCCGAG	1 cut(s)	993
NmuCI	GTSAC	3 cut(s)	808, 944, 1322
NspV	TTCGAA	1 cut(s)	138
OliI	CACNNNNGTG	1 cut(s)	1684
PagI	TCATGA	1 cut(s)	1258
PaqCI	CACCTGC	1 cut(s)	1741
PctI	GAATGC	1 cut(s)	738
PfeI	GAWTC	6 cut(s)	155, 214, 457, 721, 1131, 1454
PflMI	CCANNNNNTGG	2 cut(s)	1004, 1901
PkrI	GCNGC	6 cut(s)	750, 861, 1017, 1773, 1968, 1971
PleI	GAGTC	4 cut(s)	412, 617, 1305, 1820
PpsI	GAGTC	4 cut(s)	412, 617, 1305, 1820
PshBI	ATTAAT	1 cut(s)	615
PsiI	TTATAA	2 cut(s)	1227, 1640
Psp124BI	GAGCTC	2 cut(s)	982, 1758
Psp6I	CCWGG	2 cut(s)	1234, 1856
PspGI	CCWGG	2 cut(s)	1234, 1856
PspN4I	GGNNCC	7 cut(s)	17, 18, 195, 207, 516, 1104, 1240
PspOMI	GGGCCC	2 cut(s)	15, 205
PspPI	GGNCC	9 cut(s)	15, 16, 127, 193, 205, 206, 1102, 1220, 1297
PstI	CTGCAG	2 cut(s)	861, 874
PsuI	RGATCY	1 cut(s)	108
RsaI	GTAC	5 cut(s)	149, 957, 1051, 1232, 1791
RsaNI	GTAC	5 cut(s)	148, 956, 1050, 1231, 1790
RseI	CAYNNNNRTG	3 cut(s)	617, 743, 1684
SacI	GAGCTC	2 cut(s)	982, 1758
SaqAI	TTAA	8 cut(s)	444, 561, 615, 705, 1287, 1449, 1743, 1779
SatI	GCNGC	6 cut(s)	749, 860, 1016, 1772, 1967, 1970
Sau3AI	GATC	4 cut(s)	108, 541, 785, 1333
Sau96I	GGNCC	9 cut(s)	15, 16, 127, 193, 205, 206, 1102, 1220, 1297
ScaI	AGTACT	1 cut(s)	149
SchI	GAGTC	4 cut(s)	413, 618, 1305, 1821
ScrFI	CCNGG	5 cut(s)	266, 267, 519, 1236, 1858
SduI	GDGCHC	9 cut(s)	19, 209, 273, 365, 479, 982, 1306, 1758, 1895
SfaNI	GCATC	4 cut(s)	357, 663, 1396, 1679
SfcI	CTRYAG	3 cut(s)	857, 870, 1737
SfuI	TTCGAA	1 cut(s)	138
SinI	GGWCC	2 cut(s)	193, 1102
SmaI	CCCGGG	1 cut(s)	267
SmiMI	CAYNNNNRTG	3 cut(s)	617, 743, 1684
SmlI	CTYRAG	2 cut(s)	973, 1611
SmoI	CTYRAG	2 cut(s)	973, 1611
Sse9I	AATT	6 cut(s)	83, 369, 531, 627, 1116, 1152
SsiI	CCGC	7 cut(s)	122, 159, 183, 749, 965, 1039, 1854
SspI	AATATT	2 cut(s)	1189, 1504
SspMI	CTAG	2 cut(s)	366, 648
SstI	GAGCTC	2 cut(s)	982, 1758
StyD4I	CCNGG	5 cut(s)	264, 265, 517, 1234, 1856
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	4 cut(s)	559, 814, 933, 1667
TaiI	ACGT	1 cut(s)	1174
TaqI	TCGA	6 cut(s)	138, 407, 425, 712, 853, 1433
TasI	AATT	6 cut(s)	83, 369, 531, 627, 1116, 1152
TatI	WGTACW	2 cut(s)	147, 955
TauI	GCSGC	1 cut(s)	751
TfiI	GAWTC	6 cut(s)	155, 214, 457, 721, 1131, 1454
Tru1I	TTAA	8 cut(s)	444, 561, 615, 705, 1287, 1449, 1743, 1779
Tru9I	TTAA	8 cut(s)	444, 561, 615, 705, 1287, 1449, 1743, 1779
TscAI	CASTG	1 cut(s)	27
TseFI	GTSAC	3 cut(s)	808, 944, 1322
TseI	GCWGC	5 cut(s)	859, 1015, 1771, 1966, 1969
Tsp45I	GTSAC	3 cut(s)	808, 944, 1322
TspDTI	ATGAA	8 cut(s)	17, 274, 425, 434, 1467, 1496, 1509, 1514
TspMI	CCCGGG	1 cut(s)	265
TspRI	CASTG	1 cut(s)	27
Van91I	CCANNNNNTGG	2 cut(s)	1004, 1901
VpaK11BI	GGWCC	2 cut(s)	193, 1102
VspI	ATTAAT	1 cut(s)	615
XagI	CCTNNNNNAGG	1 cut(s)	1855
XapI	RAATTY	4 cut(s)	83, 369, 531, 627
XbaI	TCTAGA	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1755
XmaI	CCCGGG	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	491
XspI	CTAG	2 cut(s)	366, 648
ZrmI	AGTACT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.