Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022191.1

Orthogroup ID

OG0003176

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1635

Gene Structure 1635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022191.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

aaagatattgacgttaaatgtggagaagaaaagaagtacaagttatttgctgaaggcaagggtcttctggcagtaatgagcactaaaggagtagatggttgtaaaaccacaagtaatgatattattgaagtgcagcagacacttggaattgaagctgcaagaacttgtatcattgaggagataaagtatactatgaaatcacacgggatgaacatagatgatcgtcatatgatgcttttagcagatgtaatgacattcagaggtttagttcttggaatcacaagattcggcgttcaaaagatgggcaaaagtgtattgatgctggcttcatttgagcgaacggatgatcatctatttaatgcttgcgttcaggggacagttgacaaaattgaaggagtaagtgaaagcataatcatgggtataccaatgccaataggcaccggaatgttcaaaattaaacaacgcctccctgcaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002376 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0046483 GO:0048518 GO:0050789 GO:0050896 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

159

Amino Acids

17.53

Weight (kDa)

7.83

Isoelectric Point (pI)

32.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60040 AT5G60040
fragaria_vesca	FvH4_3g34290 FvH4_3g34290 FvH4_3g34290 FvH4_6g15631
malus_domestica	MD03G1106800.v1.1 MD09G1157000.v1.1
prunus_persica	Prupe.6G089600_v2.0.a1 Prupe.6G089600_v2.0.a1
pyrus_communis	pycom03g08620 pycom09g07570
rosa_chinensis	RchiOBHm_Chr3g0469301 RchiOBHm_Chr3g0469321 RchiOBHm_Chr5g0061861
rosa_laevigata	RLG00000024360 RLG00000035511
rosa_multiflora	Rmu_sc0004134.1_g000001 Rmu_sc0011641.1_g000013 Rmu_sc0011641.1_g000015 Rmu_sc0019271.1_g000001 Rmu_sc0022191.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018870 Rroxscaffold_6G00411990 Rroxscaffold_6G00412000
rosa_rugosa	Rorug03G0100400 Rorug05G0344900 Rorug05G0345000
rosa_samantha	Rh3AG149800 Rh3BG173400 Rh3CG164500 Rh3DG202000 Rh5AG405500 Rh5BG418300 Rh5CG442800 Rh5DG432400
rosa_wichuraiana	Rw5G038070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	437
AccI	GTMKAC	2 cut(s)	188, 421
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	1 cut(s)	38
AgsI	TTSAA	5 cut(s)	128, 152, 296, 392, 451
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
Alw21I	GWGCWC	1 cut(s)	83
ApeKI	GCWGC	2 cut(s)	133, 155
BanI	GGYRCC	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	2 cut(s)	142, 145
BccI	CCATC	2 cut(s)	89, 295
BclI	TGATCA	1 cut(s)	346
BisI	GCNGC	2 cut(s)	134, 156
BlsI	GCNGC	2 cut(s)	135, 157
BmiI	GGNNCC	1 cut(s)	439
BmsI	GCATC	2 cut(s)	222, 309
BpiI	GAAGAC	1 cut(s)	56
BsaBI	GATNNNNATC	1 cut(s)	348
BsaWI	WCCGGW	1 cut(s)	440
BsaXI	ACNNNNNCTCC	4 cut(s)	170, 200, 450, 480
Bse8I	GATNNNNATC	1 cut(s)	348
BseGI	GGATG	2 cut(s)	213, 349
BseJI	GATNNNNATC	1 cut(s)	348
BseRI	GAGGAG	1 cut(s)	191
BseXI	GCAGC	2 cut(s)	142, 145
BsgI	GTGCAG	1 cut(s)	152
BshNI	GGYRCC	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	441
BslFI	GGGAC	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	388
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	2 cut(s)	220, 346
BspLI	GGNNCC	1 cut(s)	439
BspT107I	GGYRCC	1 cut(s)	437
BssMI	GATC	2 cut(s)	220, 346
BssNAI	GTATAC	2 cut(s)	189, 422
Bst1107I	GTATAC	2 cut(s)	189, 422
Bst4CI	ACNGT	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	324, 364
BstF5I	GGATG	2 cut(s)	213, 349
BstKTI	GATC	2 cut(s)	223, 349
BstMBI	GATC	2 cut(s)	220, 346
BstV1I	GCAGC	2 cut(s)	142, 145
BstV2I	GAAGAC	1 cut(s)	56
BstZ17I	GTATAC	2 cut(s)	189, 422
BtsCI	GGATG	2 cut(s)	213, 349
Cac8I	GCNNGC	2 cut(s)	324, 364
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	1 cut(s)	415
CviJI	RGCY	2 cut(s)	155, 326
CviKI_1	RGCY	2 cut(s)	155, 326
CviQI	GTAC	1 cut(s)	37
DpnI	GATC	2 cut(s)	222, 348
DpnII	GATC	2 cut(s)	220, 346
Eco57I	CTGAAG	1 cut(s)	72
FaeI	CATG	1 cut(s)	418
FaiI	YATR	8 cut(s)	189, 194, 215, 228, 230, 410, 416, 422
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	1 cut(s)	414
FauNDI	CATATG	1 cut(s)	228
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	2 cut(s)	188, 421
Fnu4HI	GCNGC	2 cut(s)	134, 156
FokI	GGATG	2 cut(s)	220, 356
Fsp4HI	GCNGC	2 cut(s)	134, 156
GluI	GCNGC	2 cut(s)	134, 156
HapII	CCGG	1 cut(s)	441
Hin1II	CATG	1 cut(s)	418
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	2 cut(s)	276, 285
HpaII	CCGG	1 cut(s)	441
Hpy166II	GTNNAC	3 cut(s)	189, 382, 422
Hpy188I	TCNGA	1 cut(s)	260
Hpy8I	GTNNAC	3 cut(s)	189, 382, 422
HpyAV	CCTTC	2 cut(s)	47, 386
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	3 cut(s)	133, 158, 473
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	220, 346
LpnPI	CCDG	4 cut(s)	53, 308, 356, 454
Lsp1109I	GCAGC	2 cut(s)	142, 145
LweI	GCATC	2 cut(s)	222, 309
MaeII	ACGT	1 cut(s)	12
MalI	GATC	2 cut(s)	222, 348
MboI	GATC	2 cut(s)	220, 346
MboII	GAAGA	2 cut(s)	38, 56
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	4 cut(s)	147, 387, 453, 474
MnlI	CCTC	3 cut(s)	169, 254, 476
MseI	TTAA	3 cut(s)	15, 357, 456
MslI	CAYNNNNRTG	2 cut(s)	413, 443
MspI	CCGG	1 cut(s)	441
NdeI	CATATG	1 cut(s)	228
NdeII	GATC	2 cut(s)	220, 346
NlaIII	CATG	1 cut(s)	418
NlaIV	GGNNCC	1 cut(s)	439
PfeI	GAWTC	2 cut(s)	276, 285
PkrI	GCNGC	2 cut(s)	135, 157
PspN4I	GGNNCC	1 cut(s)	439
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	2 cut(s)	413, 443
SaqAI	TTAA	3 cut(s)	15, 357, 456
SatI	GCNGC	2 cut(s)	134, 156
Sau3AI	GATC	2 cut(s)	220, 346
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	3 cut(s)	15, 157, 265
SfaNI	GCATC	2 cut(s)	222, 309
SmiMI	CAYNNNNRTG	2 cut(s)	413, 443
Sse9I	AATT	4 cut(s)	147, 387, 453, 474
TaaI	ACNGT	1 cut(s)	379
TaiI	ACGT	1 cut(s)	15
TasI	AATT	4 cut(s)	147, 387, 453, 474
TatI	WGTACW	1 cut(s)	36
TfiI	GAWTC	2 cut(s)	276, 285
Tru1I	TTAA	3 cut(s)	15, 357, 456
Tru9I	TTAA	3 cut(s)	15, 357, 456
TseI	GCWGC	2 cut(s)	133, 155
TspDTI	ATGAA	3 cut(s)	209, 224, 318
TspGWI	ACGGA	1 cut(s)	356
XmiI	GTMKAC	2 cut(s)	188, 421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.