Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003176

Physical Location & Seq

Genomic Coordinates Forward (+)

22985275 .. 23007686

Gene Structure 22412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00018870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2568 bp

ATGCTCTGTCCCAGTCAGAGATCAGCAAAATGGCTGCAACTCAAATTTTTCTGGGTCGATATTACGATAGCAATCAAAAACCAATCAAAAGGAGGCTTGTTGGATCCCCGCTTGGGCCCTGCAAATAGGCAAAGCGGTGACTGTGAGACATGTGGTGCGAAACTTTCAGATTGTCCTGGCCACTTTGGATATTTGGTGCTTGCTGTCCCTGTATTCAATGTTGGATATTTAAGTACTGTTGTGGACGTTTTGAAGTGCATTTGTAAGTCATGCTCTCGAATAATTTTGGATGACAAATCACGCAGTCGCTTTTTGAATATTGTGAGAGATCCCAAAAAGGATAAAAGCATGACAATGAAATCAATAGTGAAGAAGTGTACTAGCATGGCAAGCAATAATAGATCAGTGAAGTGCCCGAAATGTGGATATATGAATGGTTCAGTGAAAAGGGCTCAAGGTATGCTGGCAATTGTTCATGGTGCTGTGGATGACTTTAAATCAGCAAGTCCTGTCATGAAGGATTCCAAGGCATCCATTAATCTCCAACCTCATATGCTTAACCCTGTTAAAGTTTTTTCTTTGTTCAAAAGAATGCTTGATGAGGATTGTGAACTTCTTAATCTTAAAAGTAGACCAGAGAACCTCATCATGACAACCATTGCTGTGCCACCTATAGCCATTCGTCCTTCTGTTCTTGTGGATGGATCACAGAGTAATGAAAATGACATTACAGAGAGGTTGAAGAGAATTATTCAATCAAACGCTAATGTTCAACTGGACCTATCAGAAGGTTCTACCACAAGATTTTTGTCAAATTGGGACGTACTTCAAGCCGATGTTGCGCTGTACATAAACAGTGATGTCCGTGGTATTCCTTATCACATGCAAGTAAATGTCAAGCCATTGAATGGTTTGGTACAGCGCCTCAAAGGGAAGACAGGCCGTTTTCGTGGAAACCTATGTGGGAAAAGGGTTGAATATACTGGCAGAACTGTTATTTCACCCGACCCTAATCTGAAAATTACTGAGGTCGGAATCCCTATCCAAATGGCTCAGATTTTAAGTTATCCAGAACGTGTGTCCCATCATAATATTGAAAAGTTGAAGCAGTGTGTATTTAATGGACCTTCTAAGTACCCTGGTGCCCTAGTGCTCAAACGTCAAGATGGCGAGGAATGGTCCTTGAAGGCTGAGCGACAAAGGAAGTCTCATGCTGATAATCTCCGATATGGTGACATAGTTGCTCGCCACTTAGAAGATGGGGACATTGTTCTTTTCAACAGACAACCAAGCTTGCATCGGATGTCCATCATGTGTCATAGGGCAAGGATTATGCCTTGGAGAACATTGAGGTTTAATGAATCTGTATGCAACCCTTATAATGCTGATTTTGATGGTGACGAAATGAACATGCATGTGCCGCAAACAGAGGAGGCTCGAACTGAGGCTGTTATGTTGATGGGGGTGCAAAACAATCTATGCACTCCCAAAAATGGGGAGATTTTGGTTGCTTCCACTCAAGATTTTCTAACATCTTCTTTCCTTATAACAAGGAAGGACACATTTTATGACCGTGCATCTTTTTCACTCATGTGTTCGTACATGGGGGATGGCACGGAGACTGTGGATTTGCCAACACCTGCTGTAATTAAGCCAATAGAGCTATGGACAGGAAAGCAGCTATATAGTGTGTTAGTTCGCCCAAATTCAAATGTGAGAGTATATCTAAACCTAACTGTTAGAGAGAAATCCTACTCCAACACAAAAACTGAAGATGGAAGAGAAACAGAAGCAATGTGCCCAAACGATGGGTTTGTCTATTTCCGTAACAGTGAGCTATTATCTGGGCAACTTGGGAAGGGCACTTTAGGAAATGGCAATAAGGATGGACTTTTCTCTGTTCTTCTCAGAGACTATAAAGCTCATGCTGCTGCTTCTTGCATGAATCGTGTAGCTAAATTGAGTGCCCGGTGGATTGGTAATCATGGATTCTCAATTGGGATTAGTGATGTACAACCTAGTGACATCTTGTATGGTGAGAAAGAAAAAATCATTAAGAAAGGTTATGACAAATGTGATGACCAGATAAAGTTGTATAAAGAAGGACAGCTACGACTTGCACCTGGTTGTGATGCTGCCCAATCACTTGAATCTGGGATTACTGCAGTATTAAACGATATTAGGGACCAAACTGGAAAGCTGTGCATGCAAACGCTACATTGGAGAAACAGTCCCCTGATTATGTCCCAGTGTGGTTCCAAAGGATCTGCTATCAATATCAGCCAGATGGTTGCTTGTGTTGGTCAACAATCAGTTGGTGGTCGTCGTGCACCAAATGGTTTCATAGATCGAAGCCTTCCTCACTTTCCTAGAAAAGAAAATACCCCAGCAGCTAAAGGCTTTGTTGCTAGTTCCTTTTACAGTGGCTTGACAGCTACAGAGTTCTTTTTTCATACAATGGGAGGGCGAGAAGGCCTTGTGGATACAGCTGGATCATTCCTGATGTTTAGCCTTTGCTTTTTGGTCCCTCTTCTGCAATTTGGAATGCTAAACTACATCCTAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001817 GO:0001819 GO:0002376 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0005737 GO:0005829 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0031974 GO:0031981 GO:0032479 GO:0032481 GO:0032648 GO:0032728 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045087 GO:0046483 GO:0048518 GO:0050789 GO:0050896 GO:0051239 GO:0051240 GO:0055029 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5

Protein Analysis

855

Amino Acids

95.27

Weight (kDa)

9.17

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpb1_1	PF04997	29 - 320	3.5e-69	RNA polymerase Rpb1, domain 1
RNA_pol_Rpb1_2	PF00623	322 - 489	2.1e-74	RNA polymerase Rpb1, domain 2
RNA_pol_Rpb1_3	PF04983	492 - 671	3.1e-38	RNA polymerase Rpb1, domain 3
RNA_pol_Rpb1_4	PF05000	699 - 802	2.1e-29	RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_5	PF04998	809 - 830	1.7e-06	RNA polymerase Rpb1, domain 5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60040 AT5G60040
fragaria_vesca	FvH4_3g34290 FvH4_3g34290 FvH4_3g34290 FvH4_6g15631
malus_domestica	MD03G1106800.v1.1 MD09G1157000.v1.1
prunus_persica	Prupe.6G089600_v2.0.a1 Prupe.6G089600_v2.0.a1
pyrus_communis	pycom03g08620 pycom09g07570
rosa_chinensis	RchiOBHm_Chr3g0469301 RchiOBHm_Chr3g0469321 RchiOBHm_Chr5g0061861
rosa_laevigata	RLG00000024360 RLG00000035511
rosa_multiflora	Rmu_sc0004134.1_g000001 Rmu_sc0011641.1_g000013 Rmu_sc0011641.1_g000015 Rmu_sc0019271.1_g000001 Rmu_sc0022191.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018870 Rroxscaffold_6G00411990 Rroxscaffold_6G00412000
rosa_rugosa	Rorug03G0100400 Rorug05G0344900 Rorug05G0345000
rosa_samantha	Rh3AG149800 Rh3BG173400 Rh3CG164500 Rh3DG202000 Rh5AG405500 Rh5BG418300 Rh5CG442800 Rh5DG432400
rosa_wichuraiana	Rw5G038070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1380, 1547
AarI	CACCTGC	1 cut(s)	1648
Acc36I	ACCTGC	1 cut(s)	1648
AccB1I	GGYRCC	1 cut(s)	1142
AccB7I	CCANNNNNTGG	2 cut(s)	908, 1808
AccI	GTMKAC	1 cut(s)	631
AciI	CCGC	3 cut(s)	109, 135, 1421
AclWI	GGATC	6 cut(s)	98, 111, 323, 712, 2272, 2500
AcoI	YGGCCR	1 cut(s)	178
AcsI	RAATTY	2 cut(s)	44, 1705
AcuI	CTGAAG	1 cut(s)	1791
AfaI	GTAC	8 cut(s)	235, 379, 825, 848, 918, 1136, 1601, 2013
AfiI	CCNNNNNNNGG	6 cut(s)	113, 422, 908, 1493, 1494, 1808
AflIII	ACRYGT	2 cut(s)	149, 1075
AjnI	CCWGG	3 cut(s)	175, 1138, 2122
AleI	CACNNNNGTG	1 cut(s)	1591
Alw21I	GWGCWC	2 cut(s)	1155, 2332
Alw26I	GTCTC	4 cut(s)	140, 1212, 1613, 1905
Alw44I	GTGCAC	1 cut(s)	2328
AlwI	GGATC	6 cut(s)	98, 111, 323, 712, 2272, 2500
AoxI	GGCC	4 cut(s)	115, 178, 940, 2473
ApaI	GGGCCC	1 cut(s)	119
ApaLI	GTGCAC	1 cut(s)	2328
ApeKI	GCWGC	6 cut(s)	34, 1678, 1928, 1931, 2135, 2390
ApoI	RAATTY	2 cut(s)	44, 1705
ArsI	GACNNNNNNTTYG	2 cut(s)	1612, 1644
AseI	ATTAAT	1 cut(s)	537
AspLEI	GCGC	2 cut(s)	844, 924
AspS9I	GGNCC	7 cut(s)	115, 116, 778, 1124, 1179, 2185, 2524
AsuC2I	CCSGG	1 cut(s)	1969
AsuHPI	GGTGA	5 cut(s)	149, 993, 1244, 1409, 2048
AvaII	GGWCC	5 cut(s)	778, 1124, 1179, 2185, 2524
BaeGI	GKGCMC	7 cut(s)	119, 416, 1147, 1802, 1865, 1969, 2332
BalI	TGGCCA	1 cut(s)	180
BamHI	GGATCC	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	1142
BanII	GRGCYC	2 cut(s)	119, 454
BarI	GAAGNNNNNNTAC	2 cut(s)	2094, 2126
BbsI	GAAGAC	1 cut(s)	941
Bbv12I	GWGCWC	2 cut(s)	1155, 2332
BbvI	GCAGC	6 cut(s)	21, 1690, 1915, 1918, 2122, 2402
BceAI	ACGGC	1 cut(s)	927
BciT130I	CCWGG	3 cut(s)	177, 1140, 2124
BciVI	GTATCC	1 cut(s)	2476
BcnI	CCSGG	1 cut(s)	1969
BcoDI	GTCTC	4 cut(s)	140, 1212, 1613, 1905
BfaI	CTAG	5 cut(s)	381, 1148, 2019, 2370, 2409
BfmI	CTRYAG	3 cut(s)	672, 2163, 2436
BfoI	RGCGCY	1 cut(s)	925
BfuAI	ACCTGC	1 cut(s)	1648
BfuI	GTATCC	1 cut(s)	2476
BisI	GCNGC	7 cut(s)	35, 1421, 1679, 1929, 1932, 2136, 2391
BlpI	GCTNAGC	1 cut(s)	1191
BlsI	GCNGC	7 cut(s)	36, 1422, 1680, 1930, 1933, 2137, 2392
BmcAI	AGTACT	1 cut(s)	235
Bme1390I	CCNGG	4 cut(s)	177, 1140, 1969, 2124
Bme18I	GGWCC	5 cut(s)	778, 1124, 1179, 2185, 2524
BmgT120I	GGNCC	7 cut(s)	115, 116, 778, 1124, 1179, 2185, 2524
BmiI	GGNNCC	6 cut(s)	105, 117, 1144, 2186, 2257, 2526
BmrFI	CCNGG	4 cut(s)	177, 1140, 1969, 2124
BmrI	ACTGGG	2 cut(s)	6, 2242
BmsI	GCATC	4 cut(s)	539, 1306, 1586, 2122
BmuI	ACTGGG	2 cut(s)	6, 2242
BpiI	GAAGAC	1 cut(s)	941
Bpu1102I	GCTNAGC	1 cut(s)	1191
BpuEI	CTTGAG	2 cut(s)	438, 1503
BpuMI	CCSGG	1 cut(s)	1969
BsaBI	GATNNNNATC	2 cut(s)	71, 1307
BsaJI	CCNNGG	4 cut(s)	525, 865, 1138, 1337
BsaXI	ACNNNNNCTCC	2 cut(s)	2215, 2245
Bsc4I	CCNNNNNNNGG	6 cut(s)	113, 422, 908, 1493, 1494, 1808
Bse1I	ACTGG	5 cut(s)	12, 780, 988, 2197, 2248
Bse3DI	GCAATG	2 cut(s)	657, 1800
Bse8I	GATNNNNATC	2 cut(s)	71, 1307
BseBI	CCWGG	3 cut(s)	177, 1140, 2124
BseDI	CCNNGG	4 cut(s)	525, 865, 1138, 1337
BseGI	GGATG	8 cut(s)	295, 493, 530, 706, 1308, 1615, 1891, 2556
BseJI	GATNNNNATC	2 cut(s)	71, 1307
BseLI	CCNNNNNNNGG	6 cut(s)	113, 422, 908, 1493, 1494, 1808
BseMI	GCAATG	2 cut(s)	657, 1800
BseMII	CTCAG	5 cut(s)	1017, 1067, 1182, 1434, 1921
BseNI	ACTGG	5 cut(s)	12, 780, 988, 2197, 2248
BseRI	GAGGAG	1 cut(s)	1445
BseSI	GKGCMC	7 cut(s)	119, 416, 1147, 1802, 1865, 1969, 2332
BseXI	GCAGC	6 cut(s)	21, 1690, 1915, 1918, 2122, 2402
BseYI	CCCAGC	1 cut(s)	2386
BshFI	GGCC	4 cut(s)	117, 180, 942, 2475
BshNI	GGYRCC	1 cut(s)	1142
BsiHKAI	GWGCWC	2 cut(s)	1155, 2332
BsiSI	CCGG	1 cut(s)	1969
BslFI	GGGAC	8 cut(s)	191, 833, 1066, 1277, 2198, 2217, 2230, 2510
BslI	CCNNNNNNNGG	6 cut(s)	113, 422, 908, 1493, 1494, 1808
BsmAI	GTCTC	4 cut(s)	140, 1212, 1613, 1905
BsmFI	GGGAC	8 cut(s)	191, 833, 1066, 1277, 2198, 2217, 2230, 2510
BsmI	GAATGC	2 cut(s)	597, 2550
BsnI	GGCC	4 cut(s)	117, 180, 942, 2475
Bsp120I	GGGCCC	1 cut(s)	115
Bsp1286I	GDGCHC	9 cut(s)	119, 416, 454, 1147, 1155, 1802, 1865, 1969, 2332
Bsp1407I	TGTACA	2 cut(s)	846, 2011
Bsp143I	GATC	8 cut(s)	20, 103, 328, 401, 704, 2264, 2347, 2492
Bsp1720I	GCTNAGC	1 cut(s)	1191
BspACI	CCGC	3 cut(s)	109, 135, 1421
BspANI	GGCC	4 cut(s)	117, 180, 942, 2475
BspCNI	CTCAG	5 cut(s)	1018, 1066, 1183, 1435, 1920
BspHI	TCATGA	2 cut(s)	513, 648
BspLI	GGNNCC	6 cut(s)	105, 117, 1144, 2186, 2257, 2526
BspMAI	CTGCAG	1 cut(s)	2167
BspMI	ACCTGC	1 cut(s)	1648
BspPI	GGATC	6 cut(s)	98, 111, 323, 712, 2272, 2500
BspT107I	GGYRCC	1 cut(s)	1142
BsrDI	GCAATG	2 cut(s)	657, 1800
BsrGI	TGTACA	2 cut(s)	846, 2011
BsrI	ACTGG	5 cut(s)	12, 780, 988, 2197, 2248
BssECI	CCNNGG	4 cut(s)	525, 865, 1138, 1337
BssMI	GATC	8 cut(s)	20, 103, 328, 401, 704, 2264, 2347, 2492
BssT1I	CCWWGG	2 cut(s)	525, 1337
Bst2UI	CCWGG	3 cut(s)	177, 1140, 2124
Bst6I	CTCTTC	3 cut(s)	737, 1774, 2535
BstAUI	TGTACA	2 cut(s)	846, 2011
BstC8I	GCNNGC	6 cut(s)	201, 391, 465, 1246, 1295, 2207
BstDEI	CTNAG	8 cut(s)	1026, 1053, 1131, 1191, 1252, 1443, 1907, 2561
BstDSI	CCRYGG	1 cut(s)	865
BstF5I	GGATG	8 cut(s)	295, 493, 530, 706, 1308, 1615, 1891, 2556
BstH2I	RGCGCY	1 cut(s)	925
BstHHI	GCGC	2 cut(s)	844, 924
BstKTI	GATC	8 cut(s)	23, 106, 331, 404, 707, 2267, 2350, 2495
BstMAI	GTCTC	4 cut(s)	140, 1212, 1613, 1905
BstMBI	GATC	8 cut(s)	20, 103, 328, 401, 704, 2264, 2347, 2492
BstMWI	GCNNNNNNNGC	6 cut(s)	390, 839, 1420, 1660, 1928, 2206
BstNI	CCWGG	3 cut(s)	177, 1140, 2124
BstNSI	RCATGY	5 cut(s)	153, 886, 1414, 1418, 2209
BstSCI	CCNGG	4 cut(s)	175, 1138, 1967, 2122
BstSFI	CTRYAG	3 cut(s)	672, 2163, 2436
BstSLI	GKGCMC	7 cut(s)	119, 416, 1147, 1802, 1865, 1969, 2332
BstV1I	GCAGC	6 cut(s)	21, 1690, 1915, 1918, 2122, 2402
BstV2I	GAAGAC	1 cut(s)	941
BstX2I	RGATCY	3 cut(s)	103, 328, 2264
BstYI	RGATCY	3 cut(s)	103, 328, 2264
BsuI	GTATCC	1 cut(s)	2476
BsuRI	GGCC	4 cut(s)	117, 180, 942, 2475
BtgI	CCRYGG	1 cut(s)	865
BtsCI	GGATG	8 cut(s)	295, 493, 530, 706, 1308, 1615, 1891, 2556
BtsI	GCAGTG	1 cut(s)	1115
BtsIMutI	CAGTG	7 cut(s)	411, 447, 862, 1115, 1837, 2255, 2428
BveI	ACCTGC	1 cut(s)	1648
Cac8I	GCNNGC	6 cut(s)	201, 391, 465, 1246, 1295, 2207
CciI	TCATGA	2 cut(s)	513, 648
CfoI	GCGC	2 cut(s)	844, 924
Cfr13I	GGNCC	7 cut(s)	115, 116, 778, 1124, 1179, 2185, 2524
CsiI	ACCWGGT	1 cut(s)	2122
Csp6I	GTAC	8 cut(s)	234, 378, 824, 847, 917, 1135, 1600, 2012
CviQI	GTAC	8 cut(s)	234, 378, 824, 847, 917, 1135, 1600, 2012
DdeI	CTNAG	8 cut(s)	1026, 1053, 1131, 1191, 1252, 1443, 1907, 2561
DpnI	GATC	8 cut(s)	22, 105, 330, 403, 706, 2266, 2349, 2494
DpnII	GATC	8 cut(s)	20, 103, 328, 401, 704, 2264, 2347, 2492
DraI	TTTAAA	1 cut(s)	496
EaeI	YGGCCR	1 cut(s)	178
Eam1104I	CTCTTC	3 cut(s)	737, 1774, 2535
EarI	CTCTTC	3 cut(s)	737, 1774, 2535
Eco130I	CCWWGG	2 cut(s)	525, 1337
Eco147I	AGGCCT	1 cut(s)	2475
Eco24I	GRGCYC	2 cut(s)	119, 454
Eco47I	GGWCC	5 cut(s)	778, 1124, 1179, 2185, 2524
Eco57I	CTGAAG	1 cut(s)	1791
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRII	CCWGG	3 cut(s)	175, 1138, 2122
EcoT14I	CCWWGG	2 cut(s)	525, 1337
EcoT22I	ATGCAT	1 cut(s)	1416
EcoT38I	GRGCYC	2 cut(s)	119, 454
ErhI	CCWWGG	2 cut(s)	525, 1337
FaqI	GGGAC	8 cut(s)	191, 833, 1066, 1277, 2198, 2217, 2230, 2510
FauI	CCCGC	1 cut(s)	116
FauNDI	CATATG	1 cut(s)	552
FblI	GTMKAC	1 cut(s)	631
Fnu4HI	GCNGC	7 cut(s)	35, 1421, 1679, 1929, 1932, 2136, 2391
FokI	GGATG	8 cut(s)	302, 500, 517, 713, 1315, 1622, 1898, 2543
FriOI	GRGCYC	2 cut(s)	119, 454
Fsp4HI	GCNGC	7 cut(s)	35, 1421, 1679, 1929, 1932, 2136, 2391
FspBI	CTAG	5 cut(s)	381, 1148, 2019, 2370, 2409
GlaI	GCGC	2 cut(s)	843, 923
GluI	GCNGC	7 cut(s)	35, 1421, 1679, 1929, 1932, 2136, 2391
GsaI	CCCAGC	1 cut(s)	2390
HaeII	RGCGCY	1 cut(s)	925
HaeIII	GGCC	4 cut(s)	117, 180, 942, 2475
HapII	CCGG	1 cut(s)	1969
HhaI	GCGC	2 cut(s)	844, 924
Hin6I	GCGC	2 cut(s)	842, 922
HinP1I	GCGC	2 cut(s)	842, 922
HincII	GTYRAC	1 cut(s)	2306
HindII	GTYRAC	1 cut(s)	2306
HindIII	AAGCTT	1 cut(s)	1291
HinfI	GANTC	6 cut(s)	521, 1035, 1361, 1945, 1989, 2150
HpaII	CCGG	1 cut(s)	1969
HphI	GGTGA	5 cut(s)	149, 993, 1244, 1409, 2048
Hpy166II	GTNNAC	6 cut(s)	244, 378, 611, 632, 2306, 2330
Hpy188I	TCNGA	9 cut(s)	18, 169, 787, 1017, 1034, 1056, 1226, 1302, 1910
Hpy188III	TCNNGA	7 cut(s)	276, 514, 649, 1070, 1163, 1520, 2500
Hpy8I	GTNNAC	6 cut(s)	244, 378, 611, 632, 2306, 2330
Hpy99I	CGWCG	1 cut(s)	2328
HpyCH4IV	ACGT	4 cut(s)	246, 822, 1075, 1159
HpyF10VI	GCNNNNNNNGC	6 cut(s)	390, 839, 1420, 1660, 1928, 2206
HpyF3I	CTNAG	8 cut(s)	1026, 1053, 1131, 1191, 1252, 1443, 1907, 2561
HpySE526I	ACGT	4 cut(s)	246, 822, 1075, 1159
HspAI	GCGC	2 cut(s)	842, 922
Kzo9I	GATC	8 cut(s)	20, 103, 328, 401, 704, 2264, 2347, 2492
Lsp1109I	GCAGC	6 cut(s)	21, 1690, 1915, 1918, 2122, 2402
LweI	GCATC	4 cut(s)	539, 1306, 1586, 2122
MabI	ACCWGGT	1 cut(s)	2122
MaeI	CTAG	5 cut(s)	381, 1148, 2019, 2370, 2409
MaeII	ACGT	4 cut(s)	246, 822, 1075, 1159
MaeIII	GTNAC	5 cut(s)	137, 1232, 1397, 1826, 2021
MalI	GATC	8 cut(s)	22, 105, 330, 403, 706, 2266, 2349, 2494
MboI	GATC	8 cut(s)	20, 103, 328, 401, 704, 2264, 2347, 2492
MboII	GAAGA	9 cut(s)	382, 754, 946, 1268, 1527, 1784, 1791, 1895, 2522
MfeI	CAATTG	2 cut(s)	468, 1995
MflI	RGATCY	3 cut(s)	103, 328, 2264
MhlI	GDGCHC	9 cut(s)	119, 416, 454, 1147, 1155, 1802, 1865, 1969, 2332
MlsI	TGGCCA	1 cut(s)	180
MluNI	TGGCCA	1 cut(s)	180
MmeI	TCCRAC	5 cut(s)	81, 202, 568, 1012, 1782
Mox20I	TGGCCA	1 cut(s)	180
Mph1103I	ATGCAT	1 cut(s)	1416
MscI	TGGCCA	1 cut(s)	180
MslI	CAYNNNNRTG	4 cut(s)	353, 662, 1415, 1591
Msp20I	TGGCCA	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	2489
MspI	CCGG	1 cut(s)	1969
MspR9I	CCNGG	4 cut(s)	177, 1140, 1969, 2124
MunI	CAATTG	2 cut(s)	468, 1995
Mva1269I	GAATGC	2 cut(s)	597, 2550
MvaI	CCWGG	3 cut(s)	177, 1140, 2124
MwoI	GCNNNNNNNGC	6 cut(s)	390, 839, 1420, 1660, 1928, 2206
NciI	CCSGG	1 cut(s)	1969
NdeI	CATATG	1 cut(s)	552
NdeII	GATC	8 cut(s)	20, 103, 328, 401, 704, 2264, 2347, 2492
NlaIV	GGNNCC	6 cut(s)	105, 117, 1144, 2186, 2257, 2526
NmuCI	GTSAC	4 cut(s)	137, 1232, 1397, 2021
NsiI	ATGCAT	1 cut(s)	1416
NspI	RCATGY	5 cut(s)	153, 886, 1414, 1418, 2209
OliI	CACNNNNGTG	1 cut(s)	1591
PaeI	GCATGC	1 cut(s)	2209
PagI	TCATGA	2 cut(s)	513, 648
PaqCI	CACCTGC	1 cut(s)	1648
PceI	AGGCCT	1 cut(s)	2475
PciI	ACATGT	1 cut(s)	149
PctI	GAATGC	2 cut(s)	597, 2550
PfeI	GAWTC	6 cut(s)	521, 1035, 1361, 1945, 1989, 2150
PflMI	CCANNNNNTGG	2 cut(s)	908, 1808
PkrI	GCNGC	7 cut(s)	36, 1422, 1680, 1930, 1933, 2137, 2392
PscI	ACATGT	1 cut(s)	149
PshBI	ATTAAT	1 cut(s)	537
PsiI	TTATAA	2 cut(s)	1380, 1547
Psp6I	CCWGG	3 cut(s)	175, 1138, 2122
PspFI	CCCAGC	1 cut(s)	2386
PspGI	CCWGG	3 cut(s)	175, 1138, 2122
PspN4I	GGNNCC	6 cut(s)	105, 117, 1144, 2186, 2257, 2526
PspOMI	GGGCCC	1 cut(s)	115
PspPI	GGNCC	7 cut(s)	115, 116, 778, 1124, 1179, 2185, 2524
PstI	CTGCAG	1 cut(s)	2167
PsuI	RGATCY	3 cut(s)	103, 328, 2264
PvuII	CAGCTG	1 cut(s)	2489
RsaI	GTAC	8 cut(s)	235, 379, 825, 848, 918, 1136, 1601, 2013
RsaNI	GTAC	8 cut(s)	234, 378, 824, 847, 917, 1135, 1600, 2012
RseI	CAYNNNNRTG	4 cut(s)	353, 662, 1415, 1591
SatI	GCNGC	7 cut(s)	35, 1421, 1679, 1929, 1932, 2136, 2391
Sau3AI	GATC	8 cut(s)	20, 103, 328, 401, 704, 2264, 2347, 2492
Sau96I	GGNCC	7 cut(s)	115, 116, 778, 1124, 1179, 2185, 2524
ScaI	AGTACT	1 cut(s)	235
ScrFI	CCNGG	4 cut(s)	177, 1140, 1969, 2124
SduI	GDGCHC	9 cut(s)	119, 416, 454, 1147, 1155, 1802, 1865, 1969, 2332
SexAI	ACCWGGT	1 cut(s)	2122
SfaNI	GCATC	4 cut(s)	539, 1306, 1586, 2122
SfcI	CTRYAG	3 cut(s)	672, 2163, 2436
SinI	GGWCC	5 cut(s)	778, 1124, 1179, 2185, 2524
SmiMI	CAYNNNNRTG	4 cut(s)	353, 662, 1415, 1591
SmlI	CTYRAG	2 cut(s)	453, 1518
SmoI	CTYRAG	2 cut(s)	453, 1518
SphI	GCATGC	1 cut(s)	2209
SseBI	AGGCCT	1 cut(s)	2475
SsiI	CCGC	3 cut(s)	109, 135, 1421
SspI	AATATT	2 cut(s)	319, 1093
SspMI	CTAG	5 cut(s)	381, 1148, 2019, 2370, 2409
StuI	AGGCCT	1 cut(s)	2475
StyD4I	CCNGG	4 cut(s)	175, 1138, 1967, 2122
StyI	CCWWGG	2 cut(s)	525, 1337
TaiI	ACGT	4 cut(s)	249, 825, 1078, 1162
TaqI	TCGA	4 cut(s)	57, 277, 1438, 2350
TatI	WGTACW	4 cut(s)	233, 377, 846, 2011
TauI	GCSGC	1 cut(s)	1423
TfiI	GAWTC	6 cut(s)	521, 1035, 1361, 1945, 1989, 2150
TscAI	CASTG	7 cut(s)	411, 447, 862, 1115, 1837, 2255, 2428
TseFI	GTSAC	4 cut(s)	137, 1232, 1397, 2021
TseI	GCWGC	6 cut(s)	34, 1678, 1928, 1931, 2135, 2390
Tsp45I	GTSAC	4 cut(s)	137, 1232, 1397, 2021
TspGWI	ACGGA	3 cut(s)	854, 1631, 1814
TspRI	CASTG	7 cut(s)	411, 447, 862, 1115, 1837, 2255, 2428
Van91I	CCANNNNNTGG	2 cut(s)	908, 1808
VneI	GTGCAC	1 cut(s)	2328
VpaK11BI	GGWCC	5 cut(s)	778, 1124, 1179, 2185, 2524
VspI	ATTAAT	1 cut(s)	537
XapI	RAATTY	2 cut(s)	44, 1705
XceI	RCATGY	5 cut(s)	153, 886, 1414, 1418, 2209
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1256, 1662
XmiI	GTMKAC	1 cut(s)	631
XspI	CTAG	5 cut(s)	381, 1148, 2019, 2370, 2409
ZrmI	AGTACT	1 cut(s)	235
Zsp2I	ATGCAT	1 cut(s)	1416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.