Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004537

Physical Location & Seq

Genomic Coordinates Forward (+)

37726579 .. 37729449

Gene Structure 2871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGAAGGCAGGCTACGACGTGTCGTTGATTGAGCGTTGGCCGTCGCTAACGCCGTTTGTGAACGGCGGACTCGCTGCGTATCTTCAAGGGTTGTCCATTTATGTCCCTTTCGCCGCCGTCTACTACTCCCCGCTGTTATCTCACGTCCGCCGTAGTCCCAAATTTCTGGGCTTTAACGTTCTTGCCAAGTCTTGCCCTGATGGGATTGTGATTCGTACTTTGTCTGCAAGCCTTAAACTTGGATTGTTTGAGACTCTAAGAAACAAAGCAACTGCTAGCAATGATGGAATGTCATTAACTCTTTATCAGGAAGCTGCTTGCGGGTTGATTGCCGGCGCGGCTGAGGCATACTTCAGTTTTCCATTCGTTTCTGCGTGTCTGCCGCAGGTTGATCCGACAACCTTAGCAGTAGTGCAGCGTGCCAAATACAGAAACCTTTGTGATGCTTTGTACTCTATGAGTGCCAATGGAAAACTTCCGGAGCTATGGAGAAATGCTGGTCCGTATGTGAAGACAAGAATGGGGACAAATGTGGGTATGCTCGCATCATATAATCCAAGCCTCCAGTATCTCAGGGACTCGTGTGGTTTAAGTGAAACAAGAGCACAGCTGGGTGCAAGTGCGGTTTCAGCCTTCTTTGGTGCAGCATGCTCTGTACCAGTAAAAAATGTTCTAGCACATGGGGAAAGTGGCTCCTCCCTGGATTGTGCCCTTAAAATCCTAAAATCAAGAGGATCCCTTGCATTCTTTTCAGGATTTTCTAGACAATTCGCACTTGTTGGACCTCCCATCATGATTCTATGGTTTGCTTATGAAAATGTTCGGAAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

278

Amino Acids

29.88

Weight (kDa)

9.4

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45510 FvH4_3g45510
malus_domestica	MD07G1230400.v1.1 MD11G1003900.v1.1
pyrus_communis	pycom07g20790 pycom11g00390
rosa_chinensis	RchiOBHm_Chr5g0083431 RchiOBHm_Chr5g0083561 RchiOBHm_Chr5g0083641
rosa_laevigata	RLG00000037032
rosa_multiflora	Rmu_sc0001444.1_g000005 Rmu_sc0001444.1_g000011 Rmu_sc0002245.1_g000025 Rmu_sc0002245.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001110
rosa_rugosa	Rorug05G0484600 Rorug05G0484700
rosa_samantha	Rh5AG534000 Rh5AG535700 Rh5AG536600 Rh5AG537100 Rh5AG537900 Rh5BG562000 Rh5BG562300 Rh5BG562700 Rh5CG584400 Rh5CG584700 Rh5CG584900
rosa_wichuraiana	Rw5G049880 Rw5G050470 Rw5G050480 Rw5G050550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	376
AccI	GTMKAC	1 cut(s)	120
AccII	CGCG	1 cut(s)	338
AccIII	TCCGGA	1 cut(s)	478
AciI	CCGC	8 cut(s)	66, 114, 131, 148, 321, 338, 383, 623
AclI	AACGTT	1 cut(s)	177
AclWI	GGATC	3 cut(s)	386, 729, 742
AcoI	YGGCCR	1 cut(s)	38
AcsI	RAATTY	1 cut(s)	161
AcuI	CTGAAG	1 cut(s)	337
AfaI	GTAC	3 cut(s)	217, 452, 657
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	1 cut(s)	86
AjiI	CACGTC	2 cut(s)	19, 145
AjnI	CCWGG	1 cut(s)	699
AluBI	AGCT	3 cut(s)	314, 484, 610
AluI	AGCT	3 cut(s)	314, 484, 610
Alw21I	GWGCWC	1 cut(s)	607
Alw26I	GTCTC	1 cut(s)	245
AlwI	GGATC	3 cut(s)	386, 729, 742
Aor13HI	TCCGGA	1 cut(s)	478
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	4 cut(s)	74, 314, 415, 644
ApoI	RAATTY	1 cut(s)	161
Asp700I	GAANNNNTTC	1 cut(s)	819
AspLEI	GCGC	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	500, 782
AsuNHI	GCTAGC	1 cut(s)	275
AvaII	GGWCC	2 cut(s)	500, 782
BaeGI	GKGCMC	1 cut(s)	712
BamHI	GGATCC	1 cut(s)	734
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	580
BbsI	GAAGAC	1 cut(s)	518
Bbv12I	GWGCWC	1 cut(s)	607
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	4 cut(s)	61, 301, 427, 656
BccI	CCATC	3 cut(s)	194, 278, 797
BceAI	ACGGC	5 cut(s)	25, 37, 79, 101, 135
BciT130I	CCWGG	1 cut(s)	701
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	3 cut(s)	276, 674, 762
BfuAI	ACCTGC	1 cut(s)	376
BglI	GCCNNNNNGGC	1 cut(s)	338
BisI	GCNGC	7 cut(s)	75, 114, 315, 339, 383, 416, 645
BlsI	GCNGC	7 cut(s)	76, 115, 316, 340, 384, 417, 646
Bme1390I	CCNGG	1 cut(s)	701
Bme18I	GGWCC	2 cut(s)	500, 782
BmgBI	CACGTC	2 cut(s)	19, 145
BmgT120I	GGNCC	2 cut(s)	500, 782
BmiI	GGNNCC	2 cut(s)	694, 736
BmrFI	CCNGG	1 cut(s)	701
BmsI	GCATC	2 cut(s)	433, 554
BmtI	GCTAGC	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	518
BpmI	CTGGAG	1 cut(s)	548
Bpu10I	CCTNAGC	2 cut(s)	342, 403
BsaJI	CCNNGG	1 cut(s)	699
BsaWI	WCCGGW	1 cut(s)	478
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	2 cut(s)	565, 659
Bse3DI	GCAATG	1 cut(s)	286
BseAI	TCCGGA	1 cut(s)	478
BseBI	CCWGG	1 cut(s)	701
BseDI	CCNNGG	1 cut(s)	699
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	2 cut(s)	333, 586
BseNI	ACTGG	2 cut(s)	565, 659
BseRI	GAGGAG	1 cut(s)	685
BseSI	GKGCMC	1 cut(s)	712
BseXI	GCAGC	4 cut(s)	61, 301, 427, 656
BseYI	CCCAGC	1 cut(s)	610
BsgI	GTGCAG	2 cut(s)	434, 663
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	607
BsiSI	CCGG	2 cut(s)	333, 479
BslFI	GGGAC	4 cut(s)	89, 141, 538, 590
BsmAI	GTCTC	1 cut(s)	245
BsmFI	GGGAC	4 cut(s)	89, 141, 538, 590
BsmI	GAATGC	1 cut(s)	743
BsnI	GGCC	1 cut(s)	40
Bsp1286I	GDGCHC	2 cut(s)	607, 712
Bsp13I	TCCGGA	1 cut(s)	478
Bsp143I	GATC	2 cut(s)	391, 734
BspACI	CCGC	8 cut(s)	66, 114, 131, 148, 321, 338, 383, 623
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	2 cut(s)	334, 585
BspEI	TCCGGA	1 cut(s)	478
BspFNI	CGCG	1 cut(s)	338
BspHI	TCATGA	1 cut(s)	792
BspLI	GGNNCC	2 cut(s)	694, 736
BspMI	ACCTGC	1 cut(s)	376
BspOI	GCTAGC	1 cut(s)	279
BspPI	GGATC	3 cut(s)	386, 729, 742
BsrDI	GCAATG	1 cut(s)	286
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	2 cut(s)	565, 659
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	699
BssMI	GATC	2 cut(s)	391, 734
BssSI	CACGAG	1 cut(s)	580
Bst2BI	CACGAG	1 cut(s)	580
Bst2UI	CCWGG	1 cut(s)	701
BstC8I	GCNNGC	8 cut(s)	10, 229, 277, 319, 334, 420, 543, 649
BstDEI	CTNAG	4 cut(s)	257, 342, 403, 572
BstFNI	CGCG	1 cut(s)	338
BstHHI	GCGC	1 cut(s)	338
BstKTI	GATC	2 cut(s)	394, 737
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	2 cut(s)	391, 734
BstMWI	GCNNNNNNNGC	3 cut(s)	338, 344, 629
BstNI	CCWGG	1 cut(s)	701
BstNSI	RCATGY	1 cut(s)	651
BstSCI	CCNGG	1 cut(s)	699
BstSLI	GKGCMC	1 cut(s)	712
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	4 cut(s)	61, 301, 427, 656
BstV2I	GAAGAC	1 cut(s)	518
BstX2I	RGATCY	1 cut(s)	734
BstXI	CCANNNNNNTGG	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	734
BsuRI	GGCC	1 cut(s)	40
BtrI	CACGTC	2 cut(s)	19, 145
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	8 cut(s)	10, 229, 277, 319, 334, 420, 543, 649
CciI	TCATGA	1 cut(s)	792
CfoI	GCGC	1 cut(s)	338
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	2 cut(s)	500, 782
Csp6I	GTAC	3 cut(s)	216, 451, 656
CviAII	CATG	3 cut(s)	648, 680, 793
CviQI	GTAC	3 cut(s)	216, 451, 656
DdeI	CTNAG	4 cut(s)	257, 342, 403, 572
DpnI	GATC	2 cut(s)	393, 736
DpnII	GATC	2 cut(s)	391, 734
EaeI	YGGCCR	1 cut(s)	38
EciI	GGCGGA	2 cut(s)	81, 137
Eco47I	GGWCC	2 cut(s)	500, 782
Eco57I	CTGAAG	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	699
FaeI	CATG	3 cut(s)	651, 683, 796
FaqI	GGGAC	4 cut(s)	89, 141, 538, 590
FatI	CATG	3 cut(s)	647, 679, 792
FauI	CCCGC	2 cut(s)	138, 314
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	7 cut(s)	75, 114, 315, 339, 383, 416, 645
Fsp4HI	GCNGC	7 cut(s)	75, 114, 315, 339, 383, 416, 645
FspBI	CTAG	3 cut(s)	276, 674, 762
GlaI	GCGC	1 cut(s)	337
GluI	GCNGC	7 cut(s)	75, 114, 315, 339, 383, 416, 645
GsaI	CCCAGC	1 cut(s)	614
GsuI	CTGGAG	1 cut(s)	548
HaeIII	GGCC	1 cut(s)	40
HapII	CCGG	2 cut(s)	333, 479
HhaI	GCGC	1 cut(s)	338
Hin1II	CATG	3 cut(s)	651, 683, 796
Hin6I	GCGC	1 cut(s)	336
HinP1I	GCGC	1 cut(s)	336
HinfI	GANTC	5 cut(s)	69, 211, 253, 578, 796
HpaII	CCGG	2 cut(s)	333, 479
Hpy166II	GTNNAC	2 cut(s)	61, 121
Hpy188I	TCNGA	2 cut(s)	396, 825
Hpy188III	TCNNGA	6 cut(s)	308, 479, 729, 753, 762, 793
Hpy8I	GTNNAC	2 cut(s)	61, 121
Hpy99I	CGWCG	2 cut(s)	20, 46
HpyAV	CCTTC	1 cut(s)	643
HpyCH4IV	ACGT	3 cut(s)	18, 144, 177
HpyCH4V	TGCA	5 cut(s)	227, 415, 617, 644, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	338, 344, 629
HpyF3I	CTNAG	4 cut(s)	257, 342, 403, 572
HpySE526I	ACGT	3 cut(s)	18, 144, 177
Hsp92II	CATG	3 cut(s)	651, 683, 796
HspAI	GCGC	1 cut(s)	336
Kpn2I	TCCGGA	1 cut(s)	478
KroI	GCCGGC	1 cut(s)	332
KroNI	GCCGGC	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	391, 734
LmnI	GCTCC	2 cut(s)	481, 698
Lsp1109I	GCAGC	4 cut(s)	61, 301, 427, 656
LweI	GCATC	2 cut(s)	433, 554
MaeI	CTAG	3 cut(s)	276, 674, 762
MaeII	ACGT	3 cut(s)	18, 144, 177
MalI	GATC	2 cut(s)	393, 736
MboI	GATC	2 cut(s)	391, 734
MboII	GAAGA	2 cut(s)	74, 523
MflI	RGATCY	1 cut(s)	734
MhlI	GDGCHC	2 cut(s)	607, 712
MluCI	AATT	2 cut(s)	161, 767
MlyI	GAGTC	3 cut(s)	63, 247, 572
MmeI	TCCRAC	2 cut(s)	419, 760
MnlI	CCTC	5 cut(s)	337, 572, 706, 725, 795
MroI	TCCGGA	1 cut(s)	478
MroNI	GCCGGC	1 cut(s)	332
MroXI	GAANNNNTTC	1 cut(s)	819
MseI	TTAA	6 cut(s)	174, 234, 296, 590, 714, 832
MspA1I	CMGCKG	2 cut(s)	133, 610
MspI	CCGG	2 cut(s)	333, 479
MspR9I	CCNGG	1 cut(s)	701
Mva1269I	GAATGC	1 cut(s)	743
MvaI	CCWGG	1 cut(s)	701
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	3 cut(s)	338, 344, 629
NaeI	GCCGGC	1 cut(s)	334
NdeII	GATC	2 cut(s)	391, 734
NgoMIV	GCCGGC	1 cut(s)	332
NheI	GCTAGC	1 cut(s)	275
NlaIII	CATG	3 cut(s)	651, 683, 796
NlaIV	GGNNCC	2 cut(s)	694, 736
NspI	RCATGY	1 cut(s)	651
PaeI	GCATGC	1 cut(s)	651
PagI	TCATGA	1 cut(s)	792
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PctI	GAATGC	1 cut(s)	743
PdiI	GCCGGC	1 cut(s)	334
PdmI	GAANNNNTTC	1 cut(s)	819
PfeI	GAWTC	2 cut(s)	211, 796
PkrI	GCNGC	7 cut(s)	76, 115, 316, 340, 384, 417, 646
PleI	GAGTC	3 cut(s)	63, 247, 572
PpsI	GAGTC	3 cut(s)	63, 247, 572
Psp1406I	AACGTT	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	699
PspFI	CCCAGC	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	699
PspN4I	GGNNCC	2 cut(s)	694, 736
PspPI	GGNCC	2 cut(s)	500, 782
PsrI	GAACNNNNNNTAC	2 cut(s)	654, 686
PsuI	RGATCY	1 cut(s)	734
PvuII	CAGCTG	1 cut(s)	610
RsaI	GTAC	3 cut(s)	217, 452, 657
RsaNI	GTAC	3 cut(s)	216, 451, 656
SaqAI	TTAA	6 cut(s)	174, 234, 296, 590, 714, 832
SatI	GCNGC	7 cut(s)	75, 114, 315, 339, 383, 416, 645
Sau3AI	GATC	2 cut(s)	391, 734
Sau96I	GGNCC	2 cut(s)	500, 782
SchI	GAGTC	3 cut(s)	63, 247, 572
ScrFI	CCNGG	1 cut(s)	701
SduI	GDGCHC	2 cut(s)	607, 712
SfaNI	GCATC	2 cut(s)	433, 554
SinI	GGWCC	2 cut(s)	500, 782
SphI	GCATGC	1 cut(s)	651
Sse9I	AATT	2 cut(s)	161, 767
SsiI	CCGC	8 cut(s)	66, 114, 131, 148, 321, 338, 383, 623
SspMI	CTAG	3 cut(s)	276, 674, 762
StyD4I	CCNGG	1 cut(s)	699
TaiI	ACGT	3 cut(s)	21, 147, 180
TasI	AATT	2 cut(s)	161, 767
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	3 cut(s)	116, 341, 385
TfiI	GAWTC	2 cut(s)	211, 796
Tru1I	TTAA	6 cut(s)	174, 234, 296, 590, 714, 832
Tru9I	TTAA	6 cut(s)	174, 234, 296, 590, 714, 832
TseI	GCWGC	4 cut(s)	74, 314, 415, 644
TspDTI	ATGAA	2 cut(s)	17, 828
TspGWI	ACGGA	1 cut(s)	492
VpaK11BI	GGWCC	2 cut(s)	500, 782
XapI	RAATTY	1 cut(s)	161
XbaI	TCTAGA	1 cut(s)	761
XceI	RCATGY	1 cut(s)	651
XmiI	GTMKAC	1 cut(s)	120
XmnI	GAANNNNTTC	1 cut(s)	819
XspI	CTAG	3 cut(s)	276, 674, 762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.