Rh5AG537100

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004537
Physical Location & Seq
Forward (+)
92277233 .. 92284571
7339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG537100.1

Sequence Viewer

Length: 315 bp
ATGGGGACTAATGTGGGTATGCTCGCATCATATAATCCAAGCCTTTGTTATCTCAGGGACTCATGTGGTTTAAGCGAAACAAGAGCACAGCTGGGTGCAAGTGCGGTTTCAGCGTTCTTCGGTGCAGCATGCTCTGTACCAGTAAAAAATGTTCTAGCACAAGGGAAAAGTAGCTCCTCCCTGGATTGTGCCCTTAAAATTCTAAAATCAAGAGGACCCCTTGCTTTCTTTTCAGGATTTTCTAGACAGTTTGCACTTGTTGGACCTCCTATCATGATTCTGTGGTTTGCTTATGAACATGTTCGGAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

104

Amino Acids

11.08

Weight (kDa)

9.51

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 53 - 104 1.3e-06 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 104
AcsI RAATTY 1 cut(s) 198
AfaI GTAC 1 cut(s) 138
AflIII ACRYGT 1 cut(s) 298
AjnI CCWGG 1 cut(s) 180
AluBI AGCT 2 cut(s) 91, 174
AluI AGCT 2 cut(s) 91, 174
Alw21I GWGCWC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 125
ApoI RAATTY 1 cut(s) 198
Asp700I GAANNNNTTC 1 cut(s) 300
AspS9I GGNCC 2 cut(s) 215, 263
AvaII GGWCC 2 cut(s) 215, 263
BaeGI GKGCMC 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 182
BfaI CTAG 2 cut(s) 155, 243
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 182
Bme18I GGWCC 2 cut(s) 215, 263
BmgT120I GGNCC 2 cut(s) 215, 263
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 140
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 140
BseRI GAGGAG 1 cut(s) 166
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 1 cut(s) 137
BseYI CCCAGC 1 cut(s) 91
BsgI GTGCAG 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 88
BslFI GGGAC 2 cut(s) 19, 71
BsmFI GGGAC 2 cut(s) 19, 71
Bsp1286I GDGCHC 2 cut(s) 88, 193
BspACI CCGC 1 cut(s) 104
BspCNI CTCAG 1 cut(s) 66
BspHI TCATGA 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 217
BsrI ACTGG 1 cut(s) 140
BssECI CCNNGG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 24, 130
BstDEI CTNAG 1 cut(s) 53
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 182
BstNSI RCATGY 2 cut(s) 132, 302
BstSCI CCNGG 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 137
Cac8I GCNNGC 2 cut(s) 24, 130
CciI TCATGA 1 cut(s) 273
Cfr13I GGNCC 2 cut(s) 215, 263
Csp6I GTAC 1 cut(s) 137
CviAII CATG 4 cut(s) 63, 129, 274, 299
CviJI RGCY 3 cut(s) 42, 91, 174
CviKI_1 RGCY 3 cut(s) 42, 91, 174
CviQI GTAC 1 cut(s) 137
DdeI CTNAG 1 cut(s) 53
Eco47I GGWCC 2 cut(s) 215, 263
EcoO109I RGGNCCY 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 180
FaeI CATG 4 cut(s) 66, 132, 277, 302
FaiI YATR 8 cut(s) 20, 31, 33, 64, 130, 275, 294, 300
FaqI GGGAC 2 cut(s) 19, 71
FatI CATG 4 cut(s) 62, 128, 273, 298
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 2 cut(s) 155, 243
GluI GCNGC 1 cut(s) 126
GsaI CCCAGC 1 cut(s) 95
Hin1II CATG 4 cut(s) 66, 132, 277, 302
HinfI GANTC 2 cut(s) 59, 277
Hpy188I TCNGA 1 cut(s) 306
Hpy188III TCNNGA 4 cut(s) 210, 234, 243, 274
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4V TGCA 3 cut(s) 98, 125, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 4 cut(s) 66, 132, 277, 302
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 6 cut(s) 40, 77, 153, 167, 194, 219
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 1 cut(s) 35
MaeI CTAG 2 cut(s) 155, 243
MboII GAAGA 1 cut(s) 109
MhlI GDGCHC 2 cut(s) 88, 193
MluCI AATT 1 cut(s) 198
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 3 cut(s) 187, 206, 276
MroXI GAANNNNTTC 1 cut(s) 300
MseI TTAA 2 cut(s) 71, 195
MspA1I CMGCKG 1 cut(s) 91
MspR9I CCNGG 1 cut(s) 182
MvaI CCWGG 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 110
NlaIII CATG 4 cut(s) 66, 132, 277, 302
NlaIV GGNNCC 1 cut(s) 217
NspI RCATGY 2 cut(s) 132, 302
PaeI GCATGC 1 cut(s) 132
PagI TCATGA 1 cut(s) 273
PciI ACATGT 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 300
PfeI GAWTC 1 cut(s) 277
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PpuMI RGGWCCY 1 cut(s) 215
PscI ACATGT 1 cut(s) 298
Psp5II RGGWCCY 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 180
PspFI CCCAGC 1 cut(s) 91
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 2 cut(s) 215, 263
PspPPI RGGWCCY 1 cut(s) 215
PsrI GAACNNNNNNTAC 2 cut(s) 135, 167
PvuII CAGCTG 1 cut(s) 91
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
SaqAI TTAA 2 cut(s) 71, 195
SatI GCNGC 1 cut(s) 126
Sau96I GGNCC 2 cut(s) 215, 263
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 2 cut(s) 88, 193
SetI ASST 3 cut(s) 93, 176, 268
SfaNI GCATC 1 cut(s) 35
SinI GGWCC 2 cut(s) 215, 263
SphI GCATGC 1 cut(s) 132
Sse9I AATT 1 cut(s) 198
SsiI CCGC 1 cut(s) 104
SspMI CTAG 2 cut(s) 155, 243
StyD4I CCNGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 249
TasI AATT 1 cut(s) 198
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 2 cut(s) 71, 195
Tru9I TTAA 2 cut(s) 71, 195
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 1 cut(s) 309
VpaK11BI GGWCC 2 cut(s) 215, 263
XapI RAATTY 1 cut(s) 198
XbaI TCTAGA 1 cut(s) 242
XceI RCATGY 2 cut(s) 132, 302
XmnI GAANNNNTTC 1 cut(s) 300
XspI CTAG 2 cut(s) 155, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.