Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004537

Physical Location & Seq

Genomic Coordinates Forward (+)

30486515 .. 30488830

Gene Structure 2316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1230400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGAGGAGAAGCTGAGATCAGCCATTGGAATCCCAAAAGACGTGCTCGTGAACAAGGAGCTGGGTCTGATCATGGAAGAACACCGCCAGAAGAGGAAGGACAAAGCCGACATTGCTGATCCCTCGAACCCCCTTTTCATCTGTTCACGGTGGCGGCAGCATTGGCCCTCTATCAAACCCTTCCTCAACGGCGGAGCTATCGGCGTTCTTGCGGGCTCCTGGGCTTCCCTTTACTACTCCAAGAGCTGTATGTATGCTCAGTGTCGCCAGATTCCGATGCTCCACGGTTATACCAAGATTCTTCCCGGGGCGATTTACATTCATGTGTTGACGGTGAGCCAGCAATTGGGATTGTATGAGATTTTGAGAAATAAAGCAATTGCTACCAACAAGGGAATGCCACCCACTCTTTGTCAAGAGGCTGCTTGTGGGTTGGCTGTTGGAGCAACTGGAGCATTGATCAATTTTCCATTATACTCTGGGTATCTTGGGTATAATTGTCATCAATCAACCGAACGATTTCCTATTTACAGATACGTATTTTCATTTGTCCGTACTATGGCAACCCAGAGAGCTTTGTTTCGAGAAATGTGGAATTATGTTGGTCCTTTTCTGAAGAGGAAGATGTGGTTGGACATGGGCATGCTCGCATCATATAATCCAAGCCTTGATTATCTCAGGGAGTCTTGTGGTTTTAGTGAAGCAAAAGCACAATTGGGTGCAAGTGCTTTGTCAGCATTCTTTGCTGCAGCATGCAGTTTACCCTCAAAACACATTCGCATAGTCAGACAAGAAACTGGATATGCTAGCTCTCTGGATTGTGCCCTTGCAATTCTAAAATCAAGAGGTCCTCTTGGCTTCTTTACTGGATTCCCCACATGTTTTAGCCGTGTTGCACTTCCTATCATGACTACATGGTTTGTCTTGGAAAAGATTCGGAATCTCGAGATATCAATTGGACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

322

Amino Acids

35.94

Weight (kDa)

9.42

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45510 FvH4_3g45510
malus_domestica	MD07G1230400.v1.1 MD11G1003900.v1.1
pyrus_communis	pycom07g20790 pycom11g00390
rosa_chinensis	RchiOBHm_Chr5g0083431 RchiOBHm_Chr5g0083561 RchiOBHm_Chr5g0083641
rosa_laevigata	RLG00000037032
rosa_multiflora	Rmu_sc0001444.1_g000005 Rmu_sc0001444.1_g000011 Rmu_sc0002245.1_g000025 Rmu_sc0002245.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001110
rosa_rugosa	Rorug05G0484600 Rorug05G0484700
rosa_samantha	Rh5AG534000 Rh5AG535700 Rh5AG536600 Rh5AG537100 Rh5AG537900 Rh5BG562000 Rh5BG562300 Rh5BG562700 Rh5CG584400 Rh5CG584700 Rh5CG584900
rosa_wichuraiana	Rw5G049880 Rw5G050470 Rw5G050480 Rw5G050550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	346
AciI	CCGC	4 cut(s)	85, 154, 192, 212
AclWI	GGATC	1 cut(s)	113
AcuI	CTGAAG	1 cut(s)	635
AfaI	GTAC	1 cut(s)	556
AfiI	CCNNNNNNNGG	2 cut(s)	346, 559
AflIII	ACRYGT	1 cut(s)	878
AjiI	CACGTC	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	218
AjuI	GAANNNNNNNTTGG	2 cut(s)	614, 646
AluBI	AGCT	6 cut(s)	13, 61, 197, 246, 575, 810
AluI	AGCT	6 cut(s)	13, 61, 197, 246, 575, 810
Alw21I	GWGCWC	1 cut(s)	48
AlwI	GGATC	1 cut(s)	113
Ama87I	CYCGRG	2 cut(s)	305, 944
AoxI	GGCC	1 cut(s)	164
ApeKI	GCWGC	4 cut(s)	157, 422, 746, 749
Asp700I	GAANNNNTTC	2 cut(s)	519, 933
AspS9I	GGNCC	3 cut(s)	165, 605, 848
AsuC2I	CCSGG	2 cut(s)	306, 307
AsuHPI	GGTGA	1 cut(s)	346
AsuNHI	GCTAGC	1 cut(s)	806
AvaI	CYCGRG	2 cut(s)	305, 944
AvaII	GGWCC	2 cut(s)	605, 848
BaeGI	GKGCMC	1 cut(s)	826
BanII	GRGCYC	1 cut(s)	218
BauI	CACGAG	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	4 cut(s)	169, 409, 733, 761
BceAI	ACGGC	2 cut(s)	205, 873
BciT130I	CCWGG	1 cut(s)	220
BclI	TGATCA	2 cut(s)	69, 459
BcnI	CCSGG	2 cut(s)	306, 307
BfaI	CTAG	1 cut(s)	807
BfmI	CTRYAG	2 cut(s)	747, 962
BisI	GCNGC	5 cut(s)	155, 158, 423, 747, 750
BlsI	GCNGC	5 cut(s)	156, 159, 424, 748, 751
Bme1390I	CCNGG	3 cut(s)	220, 306, 307
Bme18I	GGWCC	2 cut(s)	605, 848
BmeT110I	CYCGRG	2 cut(s)	305, 944
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	3 cut(s)	165, 605, 848
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	3 cut(s)	220, 306, 307
BmsI	GCATC	2 cut(s)	267, 659
BmtI	GCTAGC	1 cut(s)	810
BpmI	CTGGAG	1 cut(s)	471
BpuMI	CCSGG	2 cut(s)	306, 307
BsaAI	YACGTR	1 cut(s)	538
BsaJI	CCNNGG	4 cut(s)	219, 283, 305, 306
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 559
Bse1I	ACTGG	3 cut(s)	454, 802, 871
Bse3DI	GCAATG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	4 cut(s)	219, 283, 305, 306
BseLI	CCNNNNNNNGG	2 cut(s)	346, 559
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	3 cut(s)	5, 272, 691
BseNI	ACTGG	3 cut(s)	454, 802, 871
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	826
BseXI	GCAGC	4 cut(s)	169, 409, 733, 761
BseYI	CCCAGC	1 cut(s)	61
BshFI	GGCC	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	2 cut(s)	305, 944
BsiSI	CCGG	1 cut(s)	306
BslI	CCNNNNNNNGG	2 cut(s)	346, 559
BsmI	GAATGC	2 cut(s)	402, 737
BsnI	GGCC	1 cut(s)	166
BsoBI	CYCGRG	2 cut(s)	305, 944
Bsp1286I	GDGCHC	3 cut(s)	48, 218, 826
Bsp143I	GATC	4 cut(s)	17, 69, 118, 459
BspACI	CCGC	4 cut(s)	85, 154, 192, 212
BspANI	GGCC	1 cut(s)	166
BspCNI	CTCAG	3 cut(s)	6, 271, 690
BspHI	TCATGA	1 cut(s)	906
BspLI	GGNNCC	1 cut(s)	217
BspMAI	CTGCAG	1 cut(s)	751
BspOI	GCTAGC	1 cut(s)	810
BspPI	GGATC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	111
BsrI	ACTGG	3 cut(s)	454, 802, 871
BssECI	CCNNGG	4 cut(s)	219, 283, 305, 306
BssMI	GATC	4 cut(s)	17, 69, 118, 459
BssSI	CACGAG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	4 cut(s)	150, 287, 334, 963
Bst6I	CTCTTC	2 cut(s)	86, 611
BstAPI	GCANNNNNTGC	1 cut(s)	743
BstBAI	YACGTR	1 cut(s)	538
BstC8I	GCNNGC	6 cut(s)	214, 341, 644, 648, 754, 808
BstDEI	CTNAG	3 cut(s)	14, 258, 677
BstDSI	CCRYGG	1 cut(s)	283
BstKTI	GATC	4 cut(s)	20, 72, 121, 462
BstMBI	GATC	4 cut(s)	17, 69, 118, 459
BstMWI	GCNNNNNNNGC	6 cut(s)	113, 163, 443, 452, 734, 743
BstNI	CCWGG	1 cut(s)	220
BstNSI	RCATGY	3 cut(s)	646, 756, 882
BstSCI	CCNGG	3 cut(s)	218, 304, 305
BstSFI	CTRYAG	2 cut(s)	747, 962
BstSLI	GKGCMC	1 cut(s)	826
BstSNI	TACGTA	1 cut(s)	538
BstV1I	GCAGC	4 cut(s)	169, 409, 733, 761
BsuRI	GGCC	1 cut(s)	166
BtgI	CCRYGG	1 cut(s)	283
BtrI	CACGTC	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	266
Cac8I	GCNNGC	6 cut(s)	214, 341, 644, 648, 754, 808
CciI	TCATGA	1 cut(s)	906
Cfr13I	GGNCC	3 cut(s)	165, 605, 848
Cfr9I	CCCGGG	1 cut(s)	305
Csp6I	GTAC	1 cut(s)	555
CviAII	CATG	8 cut(s)	73, 323, 637, 643, 753, 879, 907, 915
CviQI	GTAC	1 cut(s)	555
DdeI	CTNAG	3 cut(s)	14, 258, 677
DpnI	GATC	4 cut(s)	19, 71, 120, 461
DpnII	GATC	4 cut(s)	17, 69, 118, 459
Eam1104I	CTCTTC	2 cut(s)	86, 611
EarI	CTCTTC	2 cut(s)	86, 611
EciI	GGCGGA	1 cut(s)	207
Eco105I	TACGTA	1 cut(s)	538
Eco24I	GRGCYC	1 cut(s)	218
Eco32I	GATATC	1 cut(s)	951
Eco47I	GGWCC	2 cut(s)	605, 848
Eco57I	CTGAAG	1 cut(s)	635
Eco88I	CYCGRG	2 cut(s)	305, 944
EcoO109I	RGGNCCY	1 cut(s)	848
EcoRII	CCWGG	1 cut(s)	218
EcoRV	GATATC	1 cut(s)	951
EcoT38I	GRGCYC	1 cut(s)	218
FaeI	CATG	8 cut(s)	76, 326, 640, 646, 756, 882, 910, 918
FatI	CATG	8 cut(s)	72, 322, 636, 642, 752, 878, 906, 914
FauI	CCCGC	1 cut(s)	205
FbaI	TGATCA	2 cut(s)	69, 459
Fnu4HI	GCNGC	5 cut(s)	155, 158, 423, 747, 750
FriOI	GRGCYC	1 cut(s)	218
Fsp4HI	GCNGC	5 cut(s)	155, 158, 423, 747, 750
FspBI	CTAG	1 cut(s)	807
GluI	GCNGC	5 cut(s)	155, 158, 423, 747, 750
GsaI	CCCAGC	1 cut(s)	65
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	1 cut(s)	166
HapII	CCGG	1 cut(s)	306
Hin1II	CATG	8 cut(s)	76, 326, 640, 646, 756, 882, 910, 918
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	7 cut(s)	30, 271, 298, 683, 870, 934, 940
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	4 cut(s)	52, 146, 330, 761
Hpy188I	TCNGA	5 cut(s)	69, 276, 615, 788, 939
Hpy188III	TCNNGA	8 cut(s)	49, 416, 584, 815, 843, 907, 944, 946
Hpy8I	GTNNAC	4 cut(s)	52, 146, 330, 761
HpyAV	CCTTC	2 cut(s)	91, 190
HpyCH4III	ACNGT	4 cut(s)	150, 287, 334, 963
HpyCH4IV	ACGT	2 cut(s)	42, 537
HpyCH4V	TGCA	5 cut(s)	722, 749, 756, 830, 896
HpyF10VI	GCNNNNNNNGC	6 cut(s)	113, 163, 443, 452, 734, 743
HpyF3I	CTNAG	3 cut(s)	14, 258, 677
HpySE526I	ACGT	2 cut(s)	42, 537
Hsp92II	CATG	8 cut(s)	76, 326, 640, 646, 756, 882, 910, 918
Ksp22I	TGATCA	2 cut(s)	69, 459
Kzo9I	GATC	4 cut(s)	17, 69, 118, 459
LmnI	GCTCC	6 cut(s)	58, 194, 221, 285, 443, 452
Lsp1109I	GCAGC	4 cut(s)	169, 409, 733, 761
LweI	GCATC	2 cut(s)	267, 659
MaeI	CTAG	1 cut(s)	807
MaeII	ACGT	2 cut(s)	42, 537
MalI	GATC	4 cut(s)	19, 71, 120, 461
MboI	GATC	4 cut(s)	17, 69, 118, 459
MboII	GAAGA	5 cut(s)	89, 103, 293, 628, 634
MfeI	CAATTG	4 cut(s)	344, 378, 713, 954
MhlI	GDGCHC	3 cut(s)	48, 218, 826
MluCI	AATT	8 cut(s)	344, 378, 463, 496, 595, 713, 831, 954
MlyI	GAGTC	1 cut(s)	692
MmeI	TCCRAC	2 cut(s)	421, 612
MnlI	CCTC	9 cut(s)	87, 133, 178, 194, 412, 612, 775, 839, 861
MroXI	GAANNNNTTC	2 cut(s)	519, 933
MslI	CAYNNNNRTG	2 cut(s)	323, 641
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	3 cut(s)	220, 306, 307
MunI	CAATTG	4 cut(s)	344, 378, 713, 954
Mva1269I	GAATGC	2 cut(s)	402, 737
MvaI	CCWGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	6 cut(s)	113, 163, 443, 452, 734, 743
NciI	CCSGG	2 cut(s)	306, 307
NdeII	GATC	4 cut(s)	17, 69, 118, 459
NheI	GCTAGC	1 cut(s)	806
NlaIII	CATG	8 cut(s)	76, 326, 640, 646, 756, 882, 910, 918
NlaIV	GGNNCC	1 cut(s)	217
NspI	RCATGY	3 cut(s)	646, 756, 882
PaeI	GCATGC	2 cut(s)	646, 756
PaeR7I	CTCGAG	1 cut(s)	944
PagI	TCATGA	1 cut(s)	906
PciI	ACATGT	1 cut(s)	878
PctI	GAATGC	2 cut(s)	402, 737
PdmI	GAANNNNTTC	2 cut(s)	519, 933
PfeI	GAWTC	6 cut(s)	30, 271, 298, 870, 934, 940
PflMI	CCANNNNNTGG	1 cut(s)	346
PkrI	GCNGC	5 cut(s)	156, 159, 424, 748, 751
PleI	GAGTC	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	691
Ppu21I	YACGTR	1 cut(s)	538
PpuMI	RGGWCCY	1 cut(s)	848
PscI	ACATGT	1 cut(s)	878
Psp5II	RGGWCCY	1 cut(s)	848
Psp6I	CCWGG	1 cut(s)	218
PspFI	CCCAGC	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	3 cut(s)	165, 605, 848
PspPPI	RGGWCCY	1 cut(s)	848
PstI	CTGCAG	1 cut(s)	751
RsaI	GTAC	1 cut(s)	556
RsaNI	GTAC	1 cut(s)	555
RseI	CAYNNNNRTG	2 cut(s)	323, 641
SatI	GCNGC	5 cut(s)	155, 158, 423, 747, 750
Sau3AI	GATC	4 cut(s)	17, 69, 118, 459
Sau96I	GGNCC	3 cut(s)	165, 605, 848
SchI	GAGTC	1 cut(s)	692
ScrFI	CCNGG	3 cut(s)	220, 306, 307
SduI	GDGCHC	3 cut(s)	48, 218, 826
SetI	ASST	9 cut(s)	15, 45, 63, 199, 248, 540, 577, 812, 850
SfaNI	GCATC	2 cut(s)	267, 659
SfcI	CTRYAG	2 cut(s)	747, 962
Sfr274I	CTCGAG	1 cut(s)	944
SinI	GGWCC	2 cut(s)	605, 848
SlaI	CTCGAG	1 cut(s)	944
SmaI	CCCGGG	1 cut(s)	307
SmiMI	CAYNNNNRTG	2 cut(s)	323, 641
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
SnaBI	TACGTA	1 cut(s)	538
SphI	GCATGC	2 cut(s)	646, 756
Sse9I	AATT	8 cut(s)	344, 378, 463, 496, 595, 713, 831, 954
SsiI	CCGC	4 cut(s)	85, 154, 192, 212
SspMI	CTAG	1 cut(s)	807
StyD4I	CCNGG	3 cut(s)	218, 304, 305
TaaI	ACNGT	4 cut(s)	150, 287, 334, 963
TaiI	ACGT	2 cut(s)	45, 540
TaqI	TCGA	3 cut(s)	125, 583, 945
TasI	AATT	8 cut(s)	344, 378, 463, 496, 595, 713, 831, 954
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	6 cut(s)	30, 271, 298, 870, 934, 940
TscAI	CASTG	1 cut(s)	266
TseI	GCWGC	4 cut(s)	157, 422, 746, 749
TspDTI	ATGAA	3 cut(s)	127, 311, 534
TspGWI	ACGGA	1 cut(s)	542
TspMI	CCCGGG	1 cut(s)	305
TspRI	CASTG	1 cut(s)	266
Van91I	CCANNNNNTGG	1 cut(s)	346
VpaK11BI	GGWCC	2 cut(s)	605, 848
XceI	RCATGY	3 cut(s)	646, 756, 882
XhoI	CTCGAG	1 cut(s)	944
XmaI	CCCGGG	1 cut(s)	305
XmnI	GAANNNNTTC	2 cut(s)	519, 933
XspI	CTAG	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.