RLG00000037032

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004537
Physical Location & Seq
Forward (+)
87673157 .. 87675349
2193 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000037032

Sequence Viewer

Length: 597 bp
ATGGAAGAGAATCAGAGAGTAGCCACTAGAATTGCAAATGATATGAGCTTCATCATAGACCAGAAGAAGAAGAAGAAGACCAAGCCAGAGTACGACGTGCCGTTTATTGAGCGTTGGCCGTCGCTAAAGCCCTTCGTCAATGGCGGACTCGCTGCGTTTCTTCAAGGCTTGACCCTTTATGTTCCTTTCGCTGCCATCTACTACTCCCCATTGTTATCTCCCATTCGCCGAAGTCCCAGATTTCTGGGCTTCAACATTCTTGCCAAGGAAGCTGCTTGCGGGTTGATTGCCGGGGCAGCTGAGGCATACTTCAGTTTTCCATTTGTTTCTGCATGTCTCCCGCATGTTGATCCTACGACTTTATCAATACTGCAGCGTGCAAGTGCGGTTTCAGCGTTCTTTGGTGCAGCATGCTCTGTACCAGTAAAAAATGTTCTAGCACAAGGGAAAAGTAGCTCCTCCCTGGATTGTGCCCTTAAAATTCTAAAATCGAGAGGACCCCTTGCATTCTTTTCAGGATTTTCTAGACAGTTTGCACTTGTTGGACCTCCTATCATGATTCTGTGGTTTGCTTATGAACATGTTCGGAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

199

Amino Acids

21.79

Weight (kDa)

9.72

Isoelectric Point (pI)

61.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 148 - 198 1e-05 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 144, 279, 341, 386
AclWI GGATC 1 cut(s) 344
AcoI YGGCCR 1 cut(s) 116
AcsI RAATTY 1 cut(s) 480
AcuI CTGAAG 1 cut(s) 295
AfaI GTAC 2 cut(s) 92, 420
AflIII ACRYGT 1 cut(s) 580
AgsI TTSAA 2 cut(s) 164, 253
AjiI CACGTC 1 cut(s) 97
AjnI CCWGG 1 cut(s) 462
AluBI AGCT 4 cut(s) 48, 272, 299, 456
AluI AGCT 4 cut(s) 48, 272, 299, 456
Alw26I GTCTC 1 cut(s) 341
AlwI GGATC 1 cut(s) 344
AoxI GGCC 1 cut(s) 116
ApeKI GCWGC 6 cut(s) 152, 191, 272, 296, 373, 407
ApoI RAATTY 1 cut(s) 480
Asp700I GAANNNNTTC 1 cut(s) 582
AspS9I GGNCC 2 cut(s) 497, 545
AsuC2I CCSGG 1 cut(s) 292
AvaII GGWCC 2 cut(s) 497, 545
BaeGI GKGCMC 1 cut(s) 475
BbsI GAAGAC 1 cut(s) 83
BbvCI CCTCAGC 1 cut(s) 300
BbvI GCAGC 6 cut(s) 139, 178, 259, 308, 385, 419
BccI CCATC 1 cut(s) 203
BceAI ACGGC 2 cut(s) 85, 103
BciT130I CCWGG 1 cut(s) 464
BcnI CCSGG 1 cut(s) 292
BcoDI GTCTC 1 cut(s) 341
BfaI CTAG 3 cut(s) 27, 437, 525
BfmI CTRYAG 1 cut(s) 371
BisI GCNGC 6 cut(s) 153, 192, 273, 297, 374, 408
BlsI GCNGC 6 cut(s) 154, 193, 274, 298, 375, 409
Bme1390I CCNGG 2 cut(s) 292, 464
Bme18I GGWCC 2 cut(s) 497, 545
BmgBI CACGTC 1 cut(s) 97
BmgT120I GGNCC 2 cut(s) 497, 545
BmiI GGNNCC 1 cut(s) 499
BmrFI CCNGG 2 cut(s) 292, 464
BpiI GAAGAC 1 cut(s) 83
Bpu10I CCTNAGC 1 cut(s) 300
BpuMI CCSGG 1 cut(s) 292
BsaJI CCNNGG 3 cut(s) 264, 291, 462
Bse1I ACTGG 1 cut(s) 422
BseBI CCWGG 1 cut(s) 464
BseDI CCNNGG 3 cut(s) 264, 291, 462
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 422
BseRI GAGGAG 1 cut(s) 448
BseSI GKGCMC 1 cut(s) 475
BseXI GCAGC 6 cut(s) 139, 178, 259, 308, 385, 419
BsgI GTGCAG 1 cut(s) 426
BshFI GGCC 1 cut(s) 118
BsiSI CCGG 1 cut(s) 291
BslFI GGGAC 1 cut(s) 219
BsmAI GTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 219
BsmI GAATGC 1 cut(s) 506
BsnI GGCC 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 475
Bsp143I GATC 1 cut(s) 349
BspACI CCGC 4 cut(s) 144, 279, 341, 386
BspANI GGCC 1 cut(s) 118
BspCNI CTCAG 1 cut(s) 292
BspHI TCATGA 1 cut(s) 555
BspLI GGNNCC 1 cut(s) 499
BspMAI CTGCAG 1 cut(s) 375
BspPI GGATC 1 cut(s) 344
BsrI ACTGG 1 cut(s) 422
BssECI CCNNGG 3 cut(s) 264, 291, 462
BssMI GATC 1 cut(s) 349
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 464
Bst4CI ACNGT 1 cut(s) 531
BstC8I GCNNGC 3 cut(s) 277, 378, 412
BstDEI CTNAG 1 cut(s) 300
BstKTI GATC 1 cut(s) 352
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 1 cut(s) 349
BstMWI GCNNNNNNNGC 4 cut(s) 269, 296, 302, 392
BstNI CCWGG 1 cut(s) 464
BstNSI RCATGY 4 cut(s) 336, 347, 414, 584
BstSCI CCNGG 2 cut(s) 290, 462
BstSFI CTRYAG 1 cut(s) 371
BstSLI GKGCMC 1 cut(s) 475
BstV1I GCAGC 6 cut(s) 139, 178, 259, 308, 385, 419
BstV2I GAAGAC 1 cut(s) 83
BstXI CCANNNNNNTGG 1 cut(s) 244
BsuRI GGCC 1 cut(s) 118
BtrI CACGTC 1 cut(s) 97
Cac8I GCNNGC 3 cut(s) 277, 378, 412
CciI TCATGA 1 cut(s) 555
Cfr13I GGNCC 2 cut(s) 497, 545
Csp6I GTAC 2 cut(s) 91, 419
CspCI CAANNNNNGTGG 2 cut(s) 13, 48
CviAII CATG 5 cut(s) 333, 344, 411, 556, 581
CviQI GTAC 2 cut(s) 91, 419
DdeI CTNAG 1 cut(s) 300
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 116
EciI GGCGGA 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 264
Eco47I GGWCC 2 cut(s) 497, 545
Eco57I CTGAAG 1 cut(s) 295
EcoO109I RGGNCCY 1 cut(s) 497
EcoRII CCWGG 1 cut(s) 462
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 5 cut(s) 336, 347, 414, 559, 584
FaqI GGGAC 1 cut(s) 219
FatI CATG 5 cut(s) 332, 343, 410, 555, 580
FauI CCCGC 2 cut(s) 272, 348
Fnu4HI GCNGC 6 cut(s) 153, 192, 273, 297, 374, 408
Fsp4HI GCNGC 6 cut(s) 153, 192, 273, 297, 374, 408
FspBI CTAG 3 cut(s) 27, 437, 525
GluI GCNGC 6 cut(s) 153, 192, 273, 297, 374, 408
HaeIII GGCC 1 cut(s) 118
HapII CCGG 1 cut(s) 291
Hin1II CATG 5 cut(s) 336, 347, 414, 559, 584
HinfI GANTC 3 cut(s) 10, 147, 559
HpaII CCGG 1 cut(s) 291
Hpy188I TCNGA 2 cut(s) 15, 588
Hpy188III TCNNGA 4 cut(s) 492, 516, 525, 556
Hpy99I CGWCG 2 cut(s) 98, 124
HpyAV CCTTC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 531
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 7 cut(s) 35, 332, 373, 380, 407, 506, 536
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 296, 302, 392
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 5 cut(s) 336, 347, 414, 559, 584
Kzo9I GATC 1 cut(s) 349
LmnI GCTCC 1 cut(s) 461
LpnPI CCDG 9 cut(s) 74, 99, 230, 250, 304, 435, 449, 476, 501
Lsp1109I GCAGC 6 cut(s) 139, 178, 259, 308, 385, 419
MaeI CTAG 3 cut(s) 27, 437, 525
MaeII ACGT 1 cut(s) 96
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MboII GAAGA 7 cut(s) 17, 76, 79, 82, 85, 88, 152
MhlI GDGCHC 1 cut(s) 475
MluCI AATT 2 cut(s) 30, 480
MlyI GAGTC 1 cut(s) 141
MmeI TCCRAC 1 cut(s) 523
MnlI CCTC 4 cut(s) 295, 469, 488, 558
MroXI GAANNNNTTC 1 cut(s) 582
MseI TTAA 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 2 cut(s) 292, 464
Mva1269I GAATGC 1 cut(s) 506
MvaI CCWGG 1 cut(s) 464
MwoI GCNNNNNNNGC 4 cut(s) 269, 296, 302, 392
NciI CCSGG 1 cut(s) 292
NdeII GATC 1 cut(s) 349
NlaIII CATG 5 cut(s) 336, 347, 414, 559, 584
NlaIV GGNNCC 1 cut(s) 499
NspI RCATGY 4 cut(s) 336, 347, 414, 584
PaeI GCATGC 1 cut(s) 414
PagI TCATGA 1 cut(s) 555
PciI ACATGT 1 cut(s) 580
PctI GAATGC 1 cut(s) 506
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 2 cut(s) 10, 559
PkrI GCNGC 6 cut(s) 154, 193, 274, 298, 375, 409
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
PpuMI RGGWCCY 1 cut(s) 497
PscI ACATGT 1 cut(s) 580
Psp5II RGGWCCY 1 cut(s) 497
Psp6I CCWGG 1 cut(s) 462
PspGI CCWGG 1 cut(s) 462
PspN4I GGNNCC 1 cut(s) 499
PspPI GGNCC 2 cut(s) 497, 545
PspPPI RGGWCCY 1 cut(s) 497
PsrI GAACNNNNNNTAC 2 cut(s) 417, 449
PstI CTGCAG 1 cut(s) 375
PvuII CAGCTG 1 cut(s) 299
RsaI GTAC 2 cut(s) 92, 420
RsaNI GTAC 2 cut(s) 91, 419
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 6 cut(s) 153, 192, 273, 297, 374, 408
Sau3AI GATC 1 cut(s) 349
Sau96I GGNCC 2 cut(s) 497, 545
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 2 cut(s) 292, 464
SduI GDGCHC 1 cut(s) 475
SetI ASST 6 cut(s) 50, 99, 274, 301, 458, 550
SfcI CTRYAG 1 cut(s) 371
SinI GGWCC 2 cut(s) 497, 545
SphI GCATGC 1 cut(s) 414
Sse9I AATT 2 cut(s) 30, 480
SsiI CCGC 4 cut(s) 144, 279, 341, 386
SspMI CTAG 3 cut(s) 27, 437, 525
StyD4I CCNGG 2 cut(s) 290, 462
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 1 cut(s) 531
TaiI ACGT 1 cut(s) 99
TaqI TCGA 1 cut(s) 491
TasI AATT 2 cut(s) 30, 480
TfiI GAWTC 2 cut(s) 10, 559
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TseI GCWGC 6 cut(s) 152, 191, 272, 296, 373, 407
TspDTI ATGAA 2 cut(s) 40, 591
VpaK11BI GGWCC 2 cut(s) 497, 545
XapI RAATTY 1 cut(s) 480
XbaI TCTAGA 1 cut(s) 524
XceI RCATGY 4 cut(s) 336, 347, 414, 584
XmnI GAANNNNTTC 1 cut(s) 582
XspI CTAG 3 cut(s) 27, 437, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.