Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004537

Physical Location & Seq

Genomic Coordinates Forward (+)

89320610 .. 89323128

Gene Structure 2519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35776

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGAGCTTCATCATAGACCAGAACAAGAAGAAGAAGACCAAGCCAGAGTACGACGTGCCGTTTATTTTGCGTTGGCCGTCGCTAAAGCCCTTTGTGAATGGCGGACTGGCTGCGTTTCTTCAAGGCTTGACCCTTTATGTTCCTTTCGCTGCCATCTACTACTCCCCATTGTTATCTCCCATTCGCCGAAGTCCAAGATTTCTGGGCTTCAACATTCTTGCCAAGTCGTGTCCTGATGGGATTGTGATCCGTACTTTATCTACAAGCCTTCAACTTGGATTATTCGAGACTCTAAGAAACAAAGCAATTGCTACCAATGATGGGATGGCATTAACTCTTTATCAGGAAGCTGCTTGCGGGTTGATTGCCGGGGCAGCTGAGGCATACTTCAGTTTTCCATTTGTTTCTGCATGTCTCCCGCAGGTTGATCCCACGACTTTATCAGTAGTGCAGCGTGCCAAATACAGAAACATATTTGATGCTTTCTACTCTATGAGTGCCAATAGAAAAATTTCAGCACTATGGACAAATGCTGGTCCTTATGTGAAGACAAGAATGGGGACAAATGTGGGTATGCTCGCATCATATAATCCAAGCCTCTGTTATCTCAGGGACTCGTGTGGTTTAAGCGAAACAAGAGCACAGCTGGGTGCAAGTGCGGTTTCAGCGTTCTTCGGTGCAACATGCTCTGTACCAGTAAAAAATGTTCTAGCACAAGGGGAAAGTGGCTCCTCCCTGGATTGTGCCCTTAAAATTCTAAAATCAAGAGGACCCCTTGCATTCTTTTCAGGATTTTCTAGACAGTTTGCACTTGTTGGACCTCCTATCATGATTCTGTGGTTTGCTTATGAAAATGTTCGGAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

289

Amino Acids

31.59

Weight (kDa)

9.64

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45510 FvH4_3g45510
malus_domestica	MD07G1230400.v1.1 MD11G1003900.v1.1
pyrus_communis	pycom07g20790 pycom11g00390
rosa_chinensis	RchiOBHm_Chr5g0083431 RchiOBHm_Chr5g0083561 RchiOBHm_Chr5g0083641
rosa_laevigata	RLG00000037032
rosa_multiflora	Rmu_sc0001444.1_g000005 Rmu_sc0001444.1_g000011 Rmu_sc0002245.1_g000025 Rmu_sc0002245.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001110
rosa_rugosa	Rorug05G0484600 Rorug05G0484700
rosa_samantha	Rh5AG534000 Rh5AG535700 Rh5AG536600 Rh5AG537100 Rh5AG537900 Rh5BG562000 Rh5BG562300 Rh5BG562700 Rh5CG584400 Rh5CG584700 Rh5CG584900
rosa_wichuraiana	Rw5G049880 Rw5G050470 Rw5G050480 Rw5G050550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	412
AciI	CCGC	4 cut(s)	102, 357, 419, 659
AclWI	GGATC	2 cut(s)	241, 422
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	2 cut(s)	510, 753
AcuI	CTGAAG	1 cut(s)	373
AfaI	GTAC	3 cut(s)	50, 253, 693
AfiI	CCNNNNNNNGG	1 cut(s)	321
AgsI	TTSAA	3 cut(s)	122, 211, 272
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	735
AluBI	AGCT	4 cut(s)	6, 350, 377, 646
AluI	AGCT	4 cut(s)	6, 350, 377, 646
Alw21I	GWGCWC	1 cut(s)	643
Alw26I	GTCTC	2 cut(s)	281, 419
AlwI	GGATC	2 cut(s)	241, 422
AoxI	GGCC	1 cut(s)	74
ApeKI	GCWGC	5 cut(s)	110, 149, 350, 374, 451
ApoI	RAATTY	2 cut(s)	510, 753
Asp700I	GAANNNNTTC	2 cut(s)	511, 855
AspS9I	GGNCC	3 cut(s)	536, 770, 818
AsuC2I	CCSGG	1 cut(s)	370
AvaII	GGWCC	3 cut(s)	536, 770, 818
BaeGI	GKGCMC	1 cut(s)	748
BauI	CACGAG	1 cut(s)	616
BbsI	GAAGAC	2 cut(s)	41, 554
Bbv12I	GWGCWC	1 cut(s)	643
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	5 cut(s)	97, 136, 337, 386, 463
BccI	CCATC	4 cut(s)	161, 230, 314, 319
BceAI	ACGGC	2 cut(s)	43, 61
BciT130I	CCWGG	1 cut(s)	737
BcnI	CCSGG	1 cut(s)	370
BcoDI	GTCTC	2 cut(s)	281, 419
BfaI	CTAG	2 cut(s)	710, 798
BfuAI	ACCTGC	1 cut(s)	412
BisI	GCNGC	5 cut(s)	111, 150, 351, 375, 452
BlsI	GCNGC	5 cut(s)	112, 151, 352, 376, 453
Bme1390I	CCNGG	2 cut(s)	370, 737
Bme18I	GGWCC	3 cut(s)	536, 770, 818
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	3 cut(s)	536, 770, 818
BmiI	GGNNCC	2 cut(s)	730, 772
BmrFI	CCNGG	2 cut(s)	370, 737
BmsI	GCATC	2 cut(s)	469, 590
BpiI	GAAGAC	2 cut(s)	41, 554
Bpu10I	CCTNAGC	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	370
BsaBI	GATNNNNATC	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	369, 735
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse1I	ACTGG	2 cut(s)	111, 695
Bse8I	GATNNNNATC	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	737
BseDI	CCNNGG	2 cut(s)	369, 735
BseGI	GGATG	1 cut(s)	330
BseJI	GATNNNNATC	1 cut(s)	245
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMII	CTCAG	2 cut(s)	369, 622
BseNI	ACTGG	2 cut(s)	111, 695
BseRI	GAGGAG	1 cut(s)	721
BseSI	GKGCMC	1 cut(s)	748
BseXI	GCAGC	5 cut(s)	97, 136, 337, 386, 463
BseYI	CCCAGC	1 cut(s)	646
BsgI	GTGCAG	1 cut(s)	470
BshFI	GGCC	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	643
BsiSI	CCGG	1 cut(s)	369
BslFI	GGGAC	2 cut(s)	574, 626
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	2 cut(s)	281, 419
BsmFI	GGGAC	2 cut(s)	574, 626
BsmI	GAATGC	1 cut(s)	779
BsnI	GGCC	1 cut(s)	76
Bsp1286I	GDGCHC	2 cut(s)	643, 748
Bsp143I	GATC	2 cut(s)	246, 427
BspACI	CCGC	4 cut(s)	102, 357, 419, 659
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	2 cut(s)	370, 621
BspHI	TCATGA	1 cut(s)	828
BspLI	GGNNCC	2 cut(s)	730, 772
BspMI	ACCTGC	1 cut(s)	412
BspPI	GGATC	2 cut(s)	241, 422
BsrI	ACTGG	2 cut(s)	111, 695
BssECI	CCNNGG	2 cut(s)	369, 735
BssMI	GATC	2 cut(s)	246, 427
BssSI	CACGAG	1 cut(s)	616
Bst2BI	CACGAG	1 cut(s)	616
Bst2UI	CCWGG	1 cut(s)	737
Bst4CI	ACNGT	1 cut(s)	804
BstC8I	GCNNGC	3 cut(s)	355, 456, 579
BstDEI	CTNAG	3 cut(s)	293, 378, 608
BstF5I	GGATG	1 cut(s)	330
BstKTI	GATC	2 cut(s)	249, 430
BstMAI	GTCTC	2 cut(s)	281, 419
BstMBI	GATC	2 cut(s)	246, 427
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 380, 665
BstNI	CCWGG	1 cut(s)	737
BstNSI	RCATGY	2 cut(s)	414, 687
BstSCI	CCNGG	2 cut(s)	368, 735
BstSLI	GKGCMC	1 cut(s)	748
BstV1I	GCAGC	5 cut(s)	97, 136, 337, 386, 463
BstV2I	GAAGAC	2 cut(s)	41, 554
BsuRI	GGCC	1 cut(s)	76
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	330
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	3 cut(s)	355, 456, 579
CciI	TCATGA	1 cut(s)	828
Cfr13I	GGNCC	3 cut(s)	536, 770, 818
Csp6I	GTAC	3 cut(s)	49, 252, 692
CviAII	CATG	3 cut(s)	411, 684, 829
CviQI	GTAC	3 cut(s)	49, 252, 692
DdeI	CTNAG	3 cut(s)	293, 378, 608
DpnI	GATC	2 cut(s)	248, 429
DpnII	GATC	2 cut(s)	246, 427
EaeI	YGGCCR	1 cut(s)	74
EciI	GGCGGA	1 cut(s)	117
Eco47I	GGWCC	3 cut(s)	536, 770, 818
Eco57I	CTGAAG	1 cut(s)	373
EcoO109I	RGGNCCY	1 cut(s)	770
EcoRII	CCWGG	1 cut(s)	735
FaeI	CATG	3 cut(s)	414, 687, 832
FaqI	GGGAC	2 cut(s)	574, 626
FatI	CATG	3 cut(s)	410, 683, 828
FauI	CCCGC	2 cut(s)	350, 426
Fnu4HI	GCNGC	5 cut(s)	111, 150, 351, 375, 452
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	5 cut(s)	111, 150, 351, 375, 452
FspBI	CTAG	2 cut(s)	710, 798
GluI	GCNGC	5 cut(s)	111, 150, 351, 375, 452
GsaI	CCCAGC	1 cut(s)	650
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	1 cut(s)	369
Hin1II	CATG	3 cut(s)	414, 687, 832
HinfI	GANTC	3 cut(s)	289, 614, 832
HpaII	CCGG	1 cut(s)	369
Hpy188I	TCNGA	1 cut(s)	861
Hpy188III	TCNNGA	7 cut(s)	233, 286, 344, 765, 789, 798, 829
Hpy99I	CGWCG	2 cut(s)	56, 82
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	804
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	6 cut(s)	410, 451, 653, 680, 779, 809
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 380, 665
HpyF3I	CTNAG	3 cut(s)	293, 378, 608
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	414, 687, 832
Kzo9I	GATC	2 cut(s)	246, 427
LmnI	GCTCC	1 cut(s)	734
Lsp1109I	GCAGC	5 cut(s)	97, 136, 337, 386, 463
LweI	GCATC	2 cut(s)	469, 590
MaeI	CTAG	2 cut(s)	710, 798
MaeII	ACGT	1 cut(s)	54
MalI	GATC	2 cut(s)	248, 429
MboI	GATC	2 cut(s)	246, 427
MboII	GAAGA	6 cut(s)	40, 43, 46, 110, 559, 664
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	2 cut(s)	643, 748
MluCI	AATT	3 cut(s)	306, 510, 753
MlyI	GAGTC	2 cut(s)	283, 608
MmeI	TCCRAC	1 cut(s)	796
MnlI	CCTC	5 cut(s)	373, 608, 742, 761, 831
MroXI	GAANNNNTTC	2 cut(s)	511, 855
MseI	TTAA	3 cut(s)	332, 626, 750
MspA1I	CMGCKG	2 cut(s)	377, 646
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	2 cut(s)	370, 737
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	779
MvaI	CCWGG	1 cut(s)	737
MwoI	GCNNNNNNNGC	3 cut(s)	374, 380, 665
NciI	CCSGG	1 cut(s)	370
NdeII	GATC	2 cut(s)	246, 427
NlaIII	CATG	3 cut(s)	414, 687, 832
NlaIV	GGNNCC	2 cut(s)	730, 772
NspI	RCATGY	2 cut(s)	414, 687
PagI	TCATGA	1 cut(s)	828
PctI	GAATGC	1 cut(s)	779
PdmI	GAANNNNTTC	2 cut(s)	511, 855
PfeI	GAWTC	1 cut(s)	832
PkrI	GCNGC	5 cut(s)	112, 151, 352, 376, 453
PleI	GAGTC	2 cut(s)	283, 608
PpsI	GAGTC	2 cut(s)	283, 608
PpuMI	RGGWCCY	1 cut(s)	770
Psp5II	RGGWCCY	1 cut(s)	770
Psp6I	CCWGG	1 cut(s)	735
PspFI	CCCAGC	1 cut(s)	646
PspGI	CCWGG	1 cut(s)	735
PspN4I	GGNNCC	2 cut(s)	730, 772
PspPI	GGNCC	3 cut(s)	536, 770, 818
PspPPI	RGGWCCY	1 cut(s)	770
PsrI	GAACNNNNNNTAC	2 cut(s)	690, 722
PvuII	CAGCTG	2 cut(s)	377, 646
RsaI	GTAC	3 cut(s)	50, 253, 693
RsaNI	GTAC	3 cut(s)	49, 252, 692
SaqAI	TTAA	3 cut(s)	332, 626, 750
SatI	GCNGC	5 cut(s)	111, 150, 351, 375, 452
Sau3AI	GATC	2 cut(s)	246, 427
Sau96I	GGNCC	3 cut(s)	536, 770, 818
SchI	GAGTC	2 cut(s)	283, 608
ScrFI	CCNGG	2 cut(s)	370, 737
SduI	GDGCHC	2 cut(s)	643, 748
SetI	ASST	7 cut(s)	8, 57, 352, 379, 426, 648, 823
SfaNI	GCATC	2 cut(s)	469, 590
SinI	GGWCC	3 cut(s)	536, 770, 818
Sse9I	AATT	3 cut(s)	306, 510, 753
SsiI	CCGC	4 cut(s)	102, 357, 419, 659
SspMI	CTAG	2 cut(s)	710, 798
StyD4I	CCNGG	2 cut(s)	368, 735
TaaI	ACNGT	1 cut(s)	804
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	285
TasI	AATT	3 cut(s)	306, 510, 753
TfiI	GAWTC	1 cut(s)	832
Tru1I	TTAA	3 cut(s)	332, 626, 750
Tru9I	TTAA	3 cut(s)	332, 626, 750
TseI	GCWGC	5 cut(s)	110, 149, 350, 374, 451
TspDTI	ATGAA	1 cut(s)	864
TspGWI	ACGGA	1 cut(s)	239
VpaK11BI	GGWCC	3 cut(s)	536, 770, 818
XapI	RAATTY	2 cut(s)	510, 753
XbaI	TCTAGA	1 cut(s)	797
XceI	RCATGY	2 cut(s)	414, 687
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XmnI	GAANNNNTTC	2 cut(s)	511, 855
XspI	CTAG	2 cut(s)	710, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.