Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004537

Physical Location & Seq

Genomic Coordinates Forward (+)

91927001 .. 91929865

Gene Structure 2865 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG535700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGGAGAGAAGCAGAGAGTAGCCACGGGAATTGCAAATGATCATCTGAGCTTCATCATAGACCAGAACAAGAAGACCAAGCCAGAGTACGACGTGCCGTTCATTGAGCGTTGGTCGTCGCTAAAGCCCTTTGTTAATGGCGGACTCGCTGCGTTTCTTCAAGGCTTGACCCTTTATATTCCTTTCGCTGCCATCTACTACTCCCCATTGTTATCTCCCATTCGCCGAAGTCCCAGATTTCTGGGTTTCAACATTCTTGCCAAGGTCCCATCTTTTTCACTTTCAGGGACTCTACGAAACAAAGCAATTGCTACCAATGATGGAATGGCATTAACTCTTTATCAGGAAGCTGCTTGCGGGTTGATTGCCGGGGCAGCTGAGGCATACTTCAGTTTTCCATTTGTTTCTGCATGGCTCCCGCATGGTGATCCTACGACTTTATCAATAGTGCAGCGTGCCAAATACAGAAACATATTTGATGCTCTCTACTCTATGAGTGGCAATAGAAAAATTTCAGCACTATGGACAAATGCTGGTCCTTATGTGAAGACAAGAATGGGGACAAATGCAGGTGCAAGTGCGGTTTCAGCGTTCTTCGGTGCAGCATGCTCTGTACCAGTTAAAAATGTTCTAGCACAAGGGAAAAGTGGCTCCTCCCTGGATCGTGCCCTTAAAATTCTAAAATCGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

230

Amino Acids

24.91

Weight (kDa)

9.97

Isoelectric Point (pI)

47.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45510 FvH4_3g45510
malus_domestica	MD07G1230400.v1.1 MD11G1003900.v1.1
pyrus_communis	pycom07g20790 pycom11g00390
rosa_chinensis	RchiOBHm_Chr5g0083431 RchiOBHm_Chr5g0083561 RchiOBHm_Chr5g0083641
rosa_laevigata	RLG00000037032
rosa_multiflora	Rmu_sc0001444.1_g000005 Rmu_sc0001444.1_g000011 Rmu_sc0002245.1_g000025 Rmu_sc0002245.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001110
rosa_rugosa	Rorug05G0484600 Rorug05G0484700
rosa_samantha	Rh5AG534000 Rh5AG535700 Rh5AG536600 Rh5AG537100 Rh5AG537900 Rh5BG562000 Rh5BG562300 Rh5BG562700 Rh5CG584400 Rh5CG584700 Rh5CG584900
rosa_wichuraiana	Rw5G049880 Rw5G050470 Rw5G050480 Rw5G050550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	560
Acc36I	ACCTGC	1 cut(s)	560
AciI	CCGC	4 cut(s)	141, 357, 419, 581
AclWI	GGATC	2 cut(s)	422, 669
AcsI	RAATTY	2 cut(s)	510, 675
AcuI	CTGAAG	1 cut(s)	373
AfaI	GTAC	2 cut(s)	89, 615
AgsI	TTSAA	2 cut(s)	161, 250
AjiI	CACGTC	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	657
AluBI	AGCT	3 cut(s)	51, 350, 377
AluI	AGCT	3 cut(s)	51, 350, 377
AlwI	GGATC	2 cut(s)	422, 669
ApeKI	GCWGC	6 cut(s)	149, 188, 350, 374, 451, 602
ApoI	RAATTY	2 cut(s)	510, 675
Asp700I	GAANNNNTTC	1 cut(s)	511
AspS9I	GGNCC	2 cut(s)	265, 536
AsuC2I	CCSGG	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	437
AvaII	GGWCC	2 cut(s)	265, 536
BaeGI	GKGCMC	1 cut(s)	670
BbsI	GAAGAC	2 cut(s)	80, 554
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	6 cut(s)	136, 175, 337, 386, 463, 614
BccI	CCATC	3 cut(s)	200, 277, 314
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	659
BclI	TGATCA	1 cut(s)	40
BcnI	CCSGG	1 cut(s)	370
BfaI	CTAG	1 cut(s)	632
BfuAI	ACCTGC	1 cut(s)	560
BisI	GCNGC	6 cut(s)	150, 189, 351, 375, 452, 603
BlsI	GCNGC	6 cut(s)	151, 190, 352, 376, 453, 604
Bme1390I	CCNGG	2 cut(s)	370, 659
Bme18I	GGWCC	2 cut(s)	265, 536
BmgBI	CACGTC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	265, 536
BmiI	GGNNCC	3 cut(s)	267, 416, 652
BmrFI	CCNGG	2 cut(s)	370, 659
BmsI	GCATC	1 cut(s)	469
BpiI	GAAGAC	2 cut(s)	80, 554
Bpu10I	CCTNAGC	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	370
BsaJI	CCNNGG	4 cut(s)	24, 261, 369, 657
Bse1I	ACTGG	1 cut(s)	617
BseBI	CCWGG	1 cut(s)	659
BseDI	CCNNGG	4 cut(s)	24, 261, 369, 657
BseMII	CTCAG	2 cut(s)	38, 369
BseNI	ACTGG	1 cut(s)	617
BseRI	GAGGAG	1 cut(s)	643
BseSI	GKGCMC	1 cut(s)	670
BseXI	GCAGC	6 cut(s)	136, 175, 337, 386, 463, 614
BsgI	GTGCAG	2 cut(s)	470, 621
BsiSI	CCGG	1 cut(s)	369
BslFI	GGGAC	4 cut(s)	216, 251, 301, 574
BsmFI	GGGAC	4 cut(s)	216, 251, 301, 574
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp143I	GATC	3 cut(s)	40, 427, 661
BspACI	CCGC	4 cut(s)	141, 357, 419, 581
BspCNI	CTCAG	2 cut(s)	39, 370
BspLI	GGNNCC	3 cut(s)	267, 416, 652
BspMI	ACCTGC	1 cut(s)	560
BspPI	GGATC	2 cut(s)	422, 669
BsrI	ACTGG	1 cut(s)	617
BssECI	CCNNGG	4 cut(s)	24, 261, 369, 657
BssMI	GATC	3 cut(s)	40, 427, 661
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	659
BstC8I	GCNNGC	3 cut(s)	355, 456, 607
BstDEI	CTNAG	2 cut(s)	47, 378
BstDSI	CCRYGG	1 cut(s)	24
BstKTI	GATC	3 cut(s)	43, 430, 664
BstMBI	GATC	3 cut(s)	40, 427, 661
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 380, 587
BstNI	CCWGG	1 cut(s)	659
BstNSI	RCATGY	1 cut(s)	609
BstSCI	CCNGG	2 cut(s)	368, 657
BstSLI	GKGCMC	1 cut(s)	670
BstV1I	GCAGC	6 cut(s)	136, 175, 337, 386, 463, 614
BstV2I	GAAGAC	2 cut(s)	80, 554
BstXI	CCANNNNNNTGG	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	24
BtrI	CACGTC	1 cut(s)	94
BveI	ACCTGC	1 cut(s)	560
Cac8I	GCNNGC	3 cut(s)	355, 456, 607
Cfr13I	GGNCC	2 cut(s)	265, 536
Csp6I	GTAC	2 cut(s)	88, 614
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviAII	CATG	3 cut(s)	411, 422, 606
CviJI	RGCY	9 cut(s)	23, 51, 82, 127, 165, 350, 377, 415, 651
CviKI_1	RGCY	9 cut(s)	23, 51, 82, 127, 165, 350, 377, 415, 651
CviQI	GTAC	2 cut(s)	88, 614
DdeI	CTNAG	2 cut(s)	47, 378
DpnI	GATC	3 cut(s)	42, 429, 663
DpnII	GATC	3 cut(s)	40, 427, 661
EciI	GGCGGA	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	261
Eco47I	GGWCC	2 cut(s)	265, 536
Eco57I	CTGAAG	1 cut(s)	373
EcoO109I	RGGNCCY	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	657
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	3 cut(s)	414, 425, 609
FaqI	GGGAC	4 cut(s)	216, 251, 301, 574
FatI	CATG	3 cut(s)	410, 421, 605
FauI	CCCGC	2 cut(s)	350, 426
FbaI	TGATCA	1 cut(s)	40
Fnu4HI	GCNGC	6 cut(s)	150, 189, 351, 375, 452, 603
Fsp4HI	GCNGC	6 cut(s)	150, 189, 351, 375, 452, 603
FspBI	CTAG	1 cut(s)	632
GluI	GCNGC	6 cut(s)	150, 189, 351, 375, 452, 603
HapII	CCGG	1 cut(s)	369
Hin1II	CATG	3 cut(s)	414, 425, 609
HinfI	GANTC	2 cut(s)	144, 289
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	1 cut(s)	437
Hpy188I	TCNGA	1 cut(s)	48
Hpy188III	TCNNGA	2 cut(s)	344, 687
Hpy99I	CGWCG	2 cut(s)	95, 121
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	6 cut(s)	35, 410, 451, 569, 575, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 380, 587
HpyF3I	CTNAG	2 cut(s)	47, 378
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	414, 425, 609
Ksp22I	TGATCA	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	40, 427, 661
LmnI	GCTCC	2 cut(s)	420, 656
Lsp1109I	GCAGC	6 cut(s)	136, 175, 337, 386, 463, 614
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	1 cut(s)	632
MaeII	ACGT	1 cut(s)	93
MalI	GATC	3 cut(s)	42, 429, 663
MboI	GATC	3 cut(s)	40, 427, 661
MboII	GAAGA	4 cut(s)	85, 149, 559, 586
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	4 cut(s)	30, 306, 510, 675
MlyI	GAGTC	2 cut(s)	138, 283
MnlI	CCTC	2 cut(s)	373, 664
MroXI	GAANNNNTTC	1 cut(s)	511
MseI	TTAA	4 cut(s)	135, 332, 621, 672
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	2 cut(s)	370, 659
MunI	CAATTG	1 cut(s)	306
MvaI	CCWGG	1 cut(s)	659
MwoI	GCNNNNNNNGC	3 cut(s)	374, 380, 587
NciI	CCSGG	1 cut(s)	370
NdeII	GATC	3 cut(s)	40, 427, 661
NlaIII	CATG	3 cut(s)	414, 425, 609
NlaIV	GGNNCC	3 cut(s)	267, 416, 652
NspI	RCATGY	1 cut(s)	609
PaeI	GCATGC	1 cut(s)	609
PaqCI	CACCTGC	1 cut(s)	560
PdmI	GAANNNNTTC	1 cut(s)	511
PkrI	GCNGC	6 cut(s)	151, 190, 352, 376, 453, 604
PleI	GAGTC	2 cut(s)	138, 283
PpsI	GAGTC	2 cut(s)	138, 283
PpuMI	RGGWCCY	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	657
PspN4I	GGNNCC	3 cut(s)	267, 416, 652
PspPI	GGNCC	2 cut(s)	265, 536
PspPPI	RGGWCCY	1 cut(s)	265
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	2 cut(s)	89, 615
RsaNI	GTAC	2 cut(s)	88, 614
SaqAI	TTAA	4 cut(s)	135, 332, 621, 672
SatI	GCNGC	6 cut(s)	150, 189, 351, 375, 452, 603
Sau3AI	GATC	3 cut(s)	40, 427, 661
Sau96I	GGNCC	2 cut(s)	265, 536
SchI	GAGTC	2 cut(s)	138, 283
ScrFI	CCNGG	2 cut(s)	370, 659
SduI	GDGCHC	1 cut(s)	670
SetI	ASST	6 cut(s)	53, 96, 267, 352, 379, 574
SfaNI	GCATC	1 cut(s)	469
SinI	GGWCC	2 cut(s)	265, 536
SphI	GCATGC	1 cut(s)	609
Sse9I	AATT	4 cut(s)	30, 306, 510, 675
SsiI	CCGC	4 cut(s)	141, 357, 419, 581
SspMI	CTAG	1 cut(s)	632
StyD4I	CCNGG	2 cut(s)	368, 657
StyI	CCWWGG	1 cut(s)	261
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	686
TasI	AATT	4 cut(s)	30, 306, 510, 675
Tru1I	TTAA	4 cut(s)	135, 332, 621, 672
Tru9I	TTAA	4 cut(s)	135, 332, 621, 672
TseI	GCWGC	6 cut(s)	149, 188, 350, 374, 451, 602
TspDTI	ATGAA	2 cut(s)	43, 91
VpaK11BI	GGWCC	2 cut(s)	265, 536
XapI	RAATTY	2 cut(s)	510, 675
XceI	RCATGY	1 cut(s)	609
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	511
XspI	CTAG	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.