Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004537

Physical Location & Seq

Genomic Coordinates Forward (+)

87140390 .. 87142481

Gene Structure 2092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G050470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGACATTAACTCTTTATCAGGAAGCTGCTTGCGGGTTGATTGCCGGGGCAGCTGAGGCATACTTCAGTTTTCCATTTGTTTCTGCATGTCTCCCTCAGGTTGATCCTACTACTTTATCAGTAGTGCAGCGTGCCAAATACAGAAACATATTTGATGCTTTCTACTCTATGAGTGCCAATAAAAAAATTTCAGCACTATGGACAAATGCTGGTCCTTATGTTAAGACAAGAATGGGGACTAATGTGGGTATGCTCGCATCATATAATCCAAGCCTCTGTTATCTCAGGGATTCATGTGGTTTAAGCGAAGCAAGAGCACAGCTGGGTGCAAGTGTGGTTTCAGCGTACTTCGGTGCAGCATGCTCTGTACCATTAAAAAATGTTCTAGCACAAGGGGAAAGTGGCTCCTCCCTGGATTGTGCCCTTAAAATTCTAAAATCAAGAGGACCCCTTGCATTCTTTTCAGGATTTTCTAGACAGTTTGCACTTGTTGGACCTCCTATCATGGTCCTCCCTCCCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

174

Amino Acids

18.48

Weight (kDa)

9.1

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45510 FvH4_3g45510
malus_domestica	MD07G1230400.v1.1 MD11G1003900.v1.1
pyrus_communis	pycom07g20790 pycom11g00390
rosa_chinensis	RchiOBHm_Chr5g0083431 RchiOBHm_Chr5g0083561 RchiOBHm_Chr5g0083641
rosa_laevigata	RLG00000037032
rosa_multiflora	Rmu_sc0001444.1_g000005 Rmu_sc0001444.1_g000011 Rmu_sc0002245.1_g000025 Rmu_sc0002245.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001110
rosa_rugosa	Rorug05G0484600 Rorug05G0484700
rosa_samantha	Rh5AG534000 Rh5AG535700 Rh5AG536600 Rh5AG537100 Rh5AG537900 Rh5BG562000 Rh5BG562300 Rh5BG562700 Rh5CG584400 Rh5CG584700 Rh5CG584900
rosa_wichuraiana	Rw5G049880 Rw5G050470 Rw5G050480 Rw5G050550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	2 cut(s)	186, 429
AcuI	CTGAAG	1 cut(s)	49
AfaI	GTAC	2 cut(s)	347, 369
AjnI	CCWGG	1 cut(s)	411
AluBI	AGCT	3 cut(s)	26, 53, 322
AluI	AGCT	3 cut(s)	26, 53, 322
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	98
ApeKI	GCWGC	4 cut(s)	26, 50, 127, 356
ApoI	RAATTY	2 cut(s)	186, 429
AspS9I	GGNCC	4 cut(s)	212, 446, 494, 508
AsuC2I	CCSGG	1 cut(s)	46
AvaII	GGWCC	4 cut(s)	212, 446, 494, 508
AxyI	CCTNAGG	1 cut(s)	96
BaeGI	GKGCMC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	319
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	4 cut(s)	13, 62, 139, 368
BciT130I	CCWGG	1 cut(s)	413
BcnI	CCSGG	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	2 cut(s)	386, 474
BisI	GCNGC	4 cut(s)	27, 51, 128, 357
BlsI	GCNGC	4 cut(s)	28, 52, 129, 358
Bme1390I	CCNGG	2 cut(s)	46, 413
Bme18I	GGWCC	4 cut(s)	212, 446, 494, 508
BmgT120I	GGNCC	4 cut(s)	212, 446, 494, 508
BmiI	GGNNCC	2 cut(s)	406, 448
BmrFI	CCNGG	2 cut(s)	46, 413
BmsI	GCATC	2 cut(s)	145, 266
Bpu10I	CCTNAGC	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	45, 411
Bse21I	CCTNAGG	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	413
BseDI	CCNNGG	2 cut(s)	45, 411
BseMII	CTCAG	3 cut(s)	45, 110, 298
BseRI	GAGGAG	1 cut(s)	397
BseSI	GKGCMC	1 cut(s)	424
BseXI	GCAGC	4 cut(s)	13, 62, 139, 368
BseYI	CCCAGC	1 cut(s)	322
BsgI	GTGCAG	2 cut(s)	146, 375
BsiHKAI	GWGCWC	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	455
Bsp1286I	GDGCHC	2 cut(s)	319, 424
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	1 cut(s)	33
BspCNI	CTCAG	3 cut(s)	46, 109, 297
BspLI	GGNNCC	2 cut(s)	406, 448
BspPI	GGATC	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	45, 411
BssMI	GATC	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	1 cut(s)	480
BstC8I	GCNNGC	4 cut(s)	31, 132, 255, 361
BstDEI	CTNAG	3 cut(s)	54, 96, 284
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 56
BstNI	CCWGG	1 cut(s)	413
BstNSI	RCATGY	2 cut(s)	90, 363
BstSCI	CCNGG	2 cut(s)	44, 411
BstSLI	GKGCMC	1 cut(s)	424
BstV1I	GCAGC	4 cut(s)	13, 62, 139, 368
Bsu36I	CCTNAGG	1 cut(s)	96
Cac8I	GCNNGC	4 cut(s)	31, 132, 255, 361
Cfr13I	GGNCC	4 cut(s)	212, 446, 494, 508
Csp6I	GTAC	2 cut(s)	346, 368
CviAII	CATG	4 cut(s)	87, 294, 360, 505
CviJI	RGCY	5 cut(s)	26, 53, 273, 322, 405
CviKI_1	RGCY	5 cut(s)	26, 53, 273, 322, 405
CviQI	GTAC	2 cut(s)	346, 368
DdeI	CTNAG	3 cut(s)	54, 96, 284
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eco47I	GGWCC	4 cut(s)	212, 446, 494, 508
Eco57I	CTGAAG	1 cut(s)	49
Eco81I	CCTNAGG	1 cut(s)	96
EcoO109I	RGGNCCY	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	411
FaeI	CATG	4 cut(s)	90, 297, 363, 508
FaqI	GGGAC	1 cut(s)	250
FatI	CATG	4 cut(s)	86, 293, 359, 504
FauI	CCCGC	1 cut(s)	26
Fnu4HI	GCNGC	4 cut(s)	27, 51, 128, 357
Fsp4HI	GCNGC	4 cut(s)	27, 51, 128, 357
FspBI	CTAG	2 cut(s)	386, 474
GluI	GCNGC	4 cut(s)	27, 51, 128, 357
GsaI	CCCAGC	1 cut(s)	326
HapII	CCGG	1 cut(s)	45
Hin1II	CATG	4 cut(s)	90, 297, 363, 508
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	1 cut(s)	45
Hpy188III	TCNNGA	4 cut(s)	20, 441, 465, 474
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4V	TGCA	6 cut(s)	86, 127, 329, 356, 455, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 56
HpyF3I	CTNAG	3 cut(s)	54, 96, 284
Hsp92II	CATG	4 cut(s)	90, 297, 363, 508
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	1 cut(s)	410
LpnPI	CCDG	9 cut(s)	5, 58, 83, 195, 271, 308, 398, 425, 450
Lsp1109I	GCAGC	4 cut(s)	13, 62, 139, 368
LweI	GCATC	2 cut(s)	145, 266
MaeI	CTAG	2 cut(s)	386, 474
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MhlI	GDGCHC	2 cut(s)	319, 424
MluCI	AATT	2 cut(s)	186, 429
MmeI	TCCRAC	1 cut(s)	472
MnlI	CCTC	8 cut(s)	49, 105, 284, 418, 437, 507, 521, 525
MseI	TTAA	5 cut(s)	8, 222, 302, 374, 426
MspA1I	CMGCKG	2 cut(s)	53, 322
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	2 cut(s)	46, 413
Mva1269I	GAATGC	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	413
MwoI	GCNNNNNNNGC	2 cut(s)	50, 56
NciI	CCSGG	1 cut(s)	46
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	4 cut(s)	90, 297, 363, 508
NlaIV	GGNNCC	2 cut(s)	406, 448
NspI	RCATGY	2 cut(s)	90, 363
PaeI	GCATGC	1 cut(s)	363
PctI	GAATGC	1 cut(s)	455
PfeI	GAWTC	1 cut(s)	290
PkrI	GCNGC	4 cut(s)	28, 52, 129, 358
PpuMI	RGGWCCY	1 cut(s)	446
Psp5II	RGGWCCY	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	411
PspFI	CCCAGC	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	411
PspN4I	GGNNCC	2 cut(s)	406, 448
PspPI	GGNCC	4 cut(s)	212, 446, 494, 508
PspPPI	RGGWCCY	1 cut(s)	446
PvuII	CAGCTG	2 cut(s)	53, 322
RsaI	GTAC	2 cut(s)	347, 369
RsaNI	GTAC	2 cut(s)	346, 368
SaqAI	TTAA	5 cut(s)	8, 222, 302, 374, 426
SatI	GCNGC	4 cut(s)	27, 51, 128, 357
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	4 cut(s)	212, 446, 494, 508
ScrFI	CCNGG	2 cut(s)	46, 413
SduI	GDGCHC	2 cut(s)	319, 424
SetI	ASST	5 cut(s)	28, 55, 102, 324, 499
SfaNI	GCATC	2 cut(s)	145, 266
SinI	GGWCC	4 cut(s)	212, 446, 494, 508
SphI	GCATGC	1 cut(s)	363
Sse9I	AATT	2 cut(s)	186, 429
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	2 cut(s)	386, 474
StyD4I	CCNGG	2 cut(s)	44, 411
TaaI	ACNGT	1 cut(s)	480
TasI	AATT	2 cut(s)	186, 429
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	5 cut(s)	8, 222, 302, 374, 426
Tru9I	TTAA	5 cut(s)	8, 222, 302, 374, 426
TseI	GCWGC	4 cut(s)	26, 50, 127, 356
TspDTI	ATGAA	1 cut(s)	282
VpaK11BI	GGWCC	4 cut(s)	212, 446, 494, 508
XapI	RAATTY	2 cut(s)	186, 429
XbaI	TCTAGA	1 cut(s)	473
XceI	RCATGY	2 cut(s)	90, 363
XspI	CTAG	2 cut(s)	386, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.