Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0004537

Physical Location & Seq

Genomic Coordinates Forward (+)

89151243 .. 89152789

Gene Structure 1547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG562300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAGCTTCATCATAGACCAGAACAAGAAGAAGAAGACCAAGCCAGAGTACGACGTACCGTTTATTGAGCGTTGGCCGTCGCTAAAGCCCTTCGTCAATGGCGGACTCGCTGCGTTTCTTCAAGGCTTGATACTTTATGTTCCTTTCGCTGCCATCTACTACTCCCCATTGTTATCTCCCATTCGCCGAAGTCCCAGATTTCTGGGTTTCAACATTCTTGCCAAGGAAGCTGCTTGCGGGTTGATTTCCCGGGCGGCTGAGGCATACTTCAGTTTTCCATTTGTTTCTGCATGTATCCCGCAGGTTGATCCTACGACTTTATCAGTCGTGCAGCGTGCCAAATACAGAAACATATTTGATGCTCTCTACTCTATGAGTGGCAATAGAAAAATTTCAGCACTATGGACAAATGCTGGTCCTTATGTGAAGACAAGAATGGGGACAAATGTGGGTATGCTCGCATCTTATAATCCAAGCCTCTGTTATCTCAGGGACTCATGTGGTTTAAGCGAAACAAGAGCACAGCTGGGTAAAAATCCTCTCCTAATTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

184

Amino Acids

20.51

Weight (kDa)

9.75

Isoelectric Point (pI)

60.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45510 FvH4_3g45510
malus_domestica	MD07G1230400.v1.1 MD11G1003900.v1.1
pyrus_communis	pycom07g20790 pycom11g00390
rosa_chinensis	RchiOBHm_Chr5g0083431 RchiOBHm_Chr5g0083561 RchiOBHm_Chr5g0083641
rosa_laevigata	RLG00000037032
rosa_multiflora	Rmu_sc0001444.1_g000005 Rmu_sc0001444.1_g000011 Rmu_sc0002245.1_g000025 Rmu_sc0002245.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001110
rosa_rugosa	Rorug05G0484600 Rorug05G0484700
rosa_samantha	Rh5AG534000 Rh5AG535700 Rh5AG536600 Rh5AG537100 Rh5AG537900 Rh5BG562000 Rh5BG562300 Rh5BG562700 Rh5CG584400 Rh5CG584700 Rh5CG584900
rosa_wichuraiana	Rw5G049880 Rw5G050470 Rw5G050480 Rw5G050550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	468
Acc36I	ACCTGC	1 cut(s)	292
AciI	CCGC	4 cut(s)	102, 237, 254, 299
AclWI	GGATC	1 cut(s)	302
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	390
AcuI	CTGAAG	1 cut(s)	253
AfaI	GTAC	2 cut(s)	50, 57
AgsI	TTSAA	2 cut(s)	122, 211
AluBI	AGCT	3 cut(s)	6, 230, 526
AluI	AGCT	3 cut(s)	6, 230, 526
Alw21I	GWGCWC	1 cut(s)	523
AlwI	GGATC	1 cut(s)	302
Ama87I	CYCGRG	1 cut(s)	249
AoxI	GGCC	1 cut(s)	74
ApeKI	GCWGC	4 cut(s)	110, 149, 230, 331
ApoI	RAATTY	1 cut(s)	390
Asp700I	GAANNNNTTC	1 cut(s)	391
AspS9I	GGNCC	1 cut(s)	416
AsuC2I	CCSGG	2 cut(s)	250, 251
AvaI	CYCGRG	1 cut(s)	249
AvaII	GGWCC	1 cut(s)	416
BbsI	GAAGAC	2 cut(s)	41, 434
Bbv12I	GWGCWC	1 cut(s)	523
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	4 cut(s)	97, 136, 217, 343
BccI	CCATC	1 cut(s)	161
BceAI	ACGGC	1 cut(s)	61
BciVI	GTATCC	1 cut(s)	305
BcnI	CCSGG	2 cut(s)	250, 251
BfuAI	ACCTGC	1 cut(s)	292
BfuI	GTATCC	1 cut(s)	305
BisI	GCNGC	5 cut(s)	111, 150, 231, 255, 332
BlsI	GCNGC	5 cut(s)	112, 151, 232, 256, 333
Bme1390I	CCNGG	2 cut(s)	250, 251
Bme18I	GGWCC	1 cut(s)	416
BmeT110I	CYCGRG	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	416
BmrFI	CCNGG	2 cut(s)	250, 251
BmsI	GCATC	2 cut(s)	349, 470
BpiI	GAAGAC	2 cut(s)	41, 434
Bpu10I	CCTNAGC	1 cut(s)	258
BpuMI	CCSGG	2 cut(s)	250, 251
BsaJI	CCNNGG	2 cut(s)	222, 249
BseDI	CCNNGG	2 cut(s)	222, 249
BseMII	CTCAG	2 cut(s)	249, 502
BseXI	GCAGC	4 cut(s)	97, 136, 217, 343
BseYI	CCCAGC	1 cut(s)	526
BsgI	GTGCAG	1 cut(s)	350
BshFI	GGCC	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	523
BsiHKCI	CYCGRG	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	3 cut(s)	177, 454, 506
BsmFI	GGGAC	3 cut(s)	177, 454, 506
BsnI	GGCC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	523
Bsp143I	GATC	1 cut(s)	307
BspACI	CCGC	4 cut(s)	102, 237, 254, 299
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	2 cut(s)	250, 501
BspMI	ACCTGC	1 cut(s)	292
BspPI	GGATC	1 cut(s)	302
BssECI	CCNNGG	2 cut(s)	222, 249
BssMI	GATC	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	60
BstC8I	GCNNGC	3 cut(s)	235, 336, 459
BstDEI	CTNAG	2 cut(s)	258, 488
BstKTI	GATC	1 cut(s)	310
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 260
BstNSI	RCATGY	1 cut(s)	294
BstSCI	CCNGG	2 cut(s)	248, 249
BstV1I	GCAGC	4 cut(s)	97, 136, 217, 343
BstV2I	GAAGAC	2 cut(s)	41, 434
BstXI	CCANNNNNNTGG	1 cut(s)	202
BsuI	GTATCC	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	76
BveI	ACCTGC	1 cut(s)	292
Cac8I	GCNNGC	3 cut(s)	235, 336, 459
Cfr13I	GGNCC	1 cut(s)	416
Cfr9I	CCCGGG	1 cut(s)	249
Csp6I	GTAC	2 cut(s)	49, 56
CviAII	CATG	2 cut(s)	291, 498
CviJI	RGCY	9 cut(s)	6, 43, 76, 88, 126, 230, 257, 477, 526
CviKI_1	RGCY	9 cut(s)	6, 43, 76, 88, 126, 230, 257, 477, 526
CviQI	GTAC	2 cut(s)	49, 56
DdeI	CTNAG	2 cut(s)	258, 488
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	74
EciI	GGCGGA	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	253
Eco88I	CYCGRG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	2 cut(s)	294, 501
FaqI	GGGAC	3 cut(s)	177, 454, 506
FatI	CATG	2 cut(s)	290, 497
FauI	CCCGC	2 cut(s)	230, 306
Fnu4HI	GCNGC	5 cut(s)	111, 150, 231, 255, 332
Fsp4HI	GCNGC	5 cut(s)	111, 150, 231, 255, 332
GluI	GCNGC	5 cut(s)	111, 150, 231, 255, 332
GsaI	CCCAGC	1 cut(s)	530
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	1 cut(s)	250
Hin1II	CATG	2 cut(s)	294, 501
HinfI	GANTC	2 cut(s)	105, 494
HpaII	CCGG	1 cut(s)	250
Hpy99I	CGWCG	2 cut(s)	56, 82
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	2 cut(s)	290, 331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 260
HpyF3I	CTNAG	2 cut(s)	258, 488
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	2 cut(s)	294, 501
Kzo9I	GATC	1 cut(s)	307
LpnPI	CCDG	9 cut(s)	32, 57, 188, 208, 263, 287, 399, 475, 512
Lsp1109I	GCAGC	4 cut(s)	97, 136, 217, 343
LweI	GCATC	2 cut(s)	349, 470
MaeII	ACGT	1 cut(s)	54
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	5 cut(s)	40, 43, 46, 110, 439
MhlI	GDGCHC	1 cut(s)	523
MluCI	AATT	2 cut(s)	390, 546
MlyI	GAGTC	2 cut(s)	99, 488
MnlI	CCTC	3 cut(s)	253, 488, 549
MroXI	GAANNNNTTC	1 cut(s)	391
MseI	TTAA	1 cut(s)	506
MspA1I	CMGCKG	1 cut(s)	526
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	2 cut(s)	250, 251
MwoI	GCNNNNNNNGC	2 cut(s)	227, 260
NciI	CCSGG	2 cut(s)	250, 251
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	2 cut(s)	294, 501
NspI	RCATGY	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	391
PkrI	GCNGC	5 cut(s)	112, 151, 232, 256, 333
PleI	GAGTC	2 cut(s)	99, 488
PpsI	GAGTC	2 cut(s)	99, 488
PsiI	TTATAA	1 cut(s)	468
PspFI	CCCAGC	1 cut(s)	526
PspPI	GGNCC	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	526
RsaI	GTAC	2 cut(s)	50, 57
RsaNI	GTAC	2 cut(s)	49, 56
SaqAI	TTAA	1 cut(s)	506
SatI	GCNGC	5 cut(s)	111, 150, 231, 255, 332
Sau3AI	GATC	1 cut(s)	307
Sau96I	GGNCC	1 cut(s)	416
SchI	GAGTC	2 cut(s)	99, 488
ScrFI	CCNGG	2 cut(s)	250, 251
SduI	GDGCHC	1 cut(s)	523
SetI	ASST	5 cut(s)	8, 57, 232, 306, 528
SfaNI	GCATC	2 cut(s)	349, 470
SinI	GGWCC	1 cut(s)	416
SmaI	CCCGGG	1 cut(s)	251
Sse9I	AATT	2 cut(s)	390, 546
SsiI	CCGC	4 cut(s)	102, 237, 254, 299
StyD4I	CCNGG	2 cut(s)	248, 249
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	1 cut(s)	57
TasI	AATT	2 cut(s)	390, 546
TauI	GCSGC	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	506
Tru9I	TTAA	1 cut(s)	506
TseI	GCWGC	4 cut(s)	110, 149, 230, 331
TspMI	CCCGGG	1 cut(s)	249
VpaK11BI	GGWCC	1 cut(s)	416
XapI	RAATTY	1 cut(s)	390
XceI	RCATGY	1 cut(s)	294
XmaI	CCCGGG	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.