Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001444.1

Orthogroup ID

OG0004537

Physical Location & Seq

Genomic Coordinates Reverse (-)

18252 .. 18554

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001444.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atggaagagaagcagagagtagccactggaattgcaaatgaccatctgagcaagaagaagaagaccaagccagggtacgacgtgccgtttattgagcgttggccgtcgctaaagccctttgtgaatggcggactcgctgcgtttcttcaaggcttgaccctttatgttcctttcgctgccatctactactccccattgttatctcccattcgccgaagtcccagatttctgggcttcaacattcttgccaaggtcccatctttttcactttcagggttttgggttttgggttttgagttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

100

Amino Acids

11.28

Weight (kDa)

9.99

Isoelectric Point (pI)

69.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45510 FvH4_3g45510
malus_domestica	MD07G1230400.v1.1 MD11G1003900.v1.1
pyrus_communis	pycom07g20790 pycom11g00390
rosa_chinensis	RchiOBHm_Chr5g0083431 RchiOBHm_Chr5g0083561 RchiOBHm_Chr5g0083641
rosa_laevigata	RLG00000037032
rosa_multiflora	Rmu_sc0001444.1_g000005 Rmu_sc0001444.1_g000011 Rmu_sc0002245.1_g000025 Rmu_sc0002245.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001110
rosa_rugosa	Rorug05G0484600 Rorug05G0484700
rosa_samantha	Rh5AG534000 Rh5AG535700 Rh5AG536600 Rh5AG537100 Rh5AG537900 Rh5BG562000 Rh5BG562300 Rh5BG562700 Rh5CG584400 Rh5CG584700 Rh5CG584900
rosa_wichuraiana	Rw5G049880 Rw5G050470 Rw5G050480 Rw5G050550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	129
AcoI	YGGCCR	1 cut(s)	101
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	2 cut(s)	149, 238
AjiI	CACGTC	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	70
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	2 cut(s)	137, 176
AspS9I	GGNCC	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	124, 163
BccI	CCATC	3 cut(s)	51, 188, 265
BceAI	ACGGC	2 cut(s)	70, 88
BciT130I	CCWGG	1 cut(s)	72
BisI	GCNGC	2 cut(s)	138, 177
BlsI	GCNGC	2 cut(s)	139, 178
Bme1390I	CCNGG	1 cut(s)	72
Bme18I	GGWCC	1 cut(s)	253
BmgBI	CACGTC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	72
BpiI	GAAGAC	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	71, 249
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse1I	ACTGG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	2 cut(s)	71, 249
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	124, 163
BshFI	GGCC	1 cut(s)	103
BslFI	GGGAC	2 cut(s)	204, 239
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmFI	GGGAC	2 cut(s)	204, 239
BsnI	GGCC	1 cut(s)	103
BspACI	CCGC	1 cut(s)	129
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	71, 249
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	47
BstNI	CCWGG	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	70
BstV1I	GCAGC	2 cut(s)	124, 163
BstV2I	GAAGAC	1 cut(s)	68
BstXI	CCANNNNNNTGG	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	103
BtrI	CACGTC	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	253
Csp6I	GTAC	1 cut(s)	76
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviJI	RGCY	6 cut(s)	23, 70, 103, 115, 153, 234
CviKI_1	RGCY	6 cut(s)	23, 70, 103, 115, 153, 234
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	47
EaeI	YGGCCR	1 cut(s)	101
EciI	GGCGGA	1 cut(s)	144
Eco130I	CCWWGG	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	253
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	249
FaiI	YATR	1 cut(s)	165
FaqI	GGGAC	2 cut(s)	204, 239
Fnu4HI	GCNGC	2 cut(s)	138, 177
Fsp4HI	GCNGC	2 cut(s)	138, 177
GluI	GCNGC	2 cut(s)	138, 177
HaeIII	GGCC	1 cut(s)	103
HinfI	GANTC	1 cut(s)	132
Hpy188I	TCNGA	1 cut(s)	48
Hpy99I	CGWCG	2 cut(s)	83, 109
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	1 cut(s)	35
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	1 cut(s)	81
LpnPI	CCDG	6 cut(s)	12, 57, 84, 215, 235, 258
Lsp1109I	GCAGC	2 cut(s)	124, 163
MaeII	ACGT	1 cut(s)	81
MboII	GAAGA	5 cut(s)	17, 67, 70, 73, 137
MluCI	AATT	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	126
MspR9I	CCNGG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	72
NlaIV	GGNNCC	1 cut(s)	255
PkrI	GCNGC	2 cut(s)	139, 178
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
PpuMI	RGGWCCY	1 cut(s)	253
Psp5II	RGGWCCY	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	253
PspPPI	RGGWCCY	1 cut(s)	253
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SatI	GCNGC	2 cut(s)	138, 177
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	72
SetI	ASST	2 cut(s)	84, 255
SinI	GGWCC	1 cut(s)	253
Sse9I	AATT	1 cut(s)	30
SsiI	CCGC	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	70
StyI	CCWWGG	1 cut(s)	249
TaiI	ACGT	1 cut(s)	84
TasI	AATT	1 cut(s)	30
TscAI	CASTG	1 cut(s)	31
TseI	GCWGC	2 cut(s)	137, 176
TspRI	CASTG	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.