Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004537

Physical Location & Seq

Genomic Coordinates Forward (+)

92202551 .. 92229466

Gene Structure 26916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG536600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCATTAACTCTTTATCAGGAAGCTGCTTGCGGGTTGATTGCCGGGGCAGCTGAGGCATACTTCAGTTTTCCATTTGTTTCTGCATGTCTCCCGCAGGTTGATCCTACGACTTTATCAGTAGTGCAGCGTGCCAAATACAGAAACATATTTGATGCTCTCTACTCTGTGAGTGCCAATAAAAAAAATTCAGCACTATGGACAAATGCTGGTCCTTATGTTAAGACAAGAATGGGGACTAATGTGGGTATGCTCGCATCATATAATCCAAGCCTCTGTTATCTCAGGGACTCATGTGGTTTAAGCGAAACAAGAGCACAGCTGGGTGCAAGTGCGGTTTCAGCGTTCTTCGGTGCAGCATGCTCTGTACCAGTAAAAAATGTTCTAGCACAAGGGAAAAGTGGCTCCTCCCTGGATTGTGCCCTTAAAATTCTAAAATCAAGAGGACCCCTTGCATTCTTTTCTGGATTTTCTAGACAGTTTGCACTTGTTGGACCTCCTATCATGCGTGCCAAATACAGAAACATATTTGATGCTCTCTACTCTGTCAGCGCCAATAAAAAAATTTCAGCACTATGGACAAATGCTGGTCCTTATGTGAAGACAAGAATGGGGACTAATGTGGGTATGCTCGCATCATATAATCCAAGCCCCTGTTATCTCAGGGACTCATGTGGTTTAAGCGAAACAAGAGCACAGCTGGGTGCAAGTGTGGTTTCAGCGTTCTTCGGTGCAGCATGCTCTGTACCATTAAAAAATGTTCTAGCACAAGGGGAAAGTGGCTCCTCCCTGGATTGTGCCCTTAAAATTCTAAAATCAAGAGGACCCCTTGCATTCTTTTCAGGATTTTCTAGACAGTTTGCACTTGTTGGACCTCCTATCATGGGCTACTTTATACTAATGGTATCTAAATTAACTAAAGGTCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

310

Amino Acids

32.94

Weight (kDa)

9.68

Isoelectric Point (pI)

33.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45510 FvH4_3g45510
malus_domestica	MD07G1230400.v1.1 MD11G1003900.v1.1
pyrus_communis	pycom07g20790 pycom11g00390
rosa_chinensis	RchiOBHm_Chr5g0083431 RchiOBHm_Chr5g0083561 RchiOBHm_Chr5g0083641
rosa_laevigata	RLG00000037032
rosa_multiflora	Rmu_sc0001444.1_g000005 Rmu_sc0001444.1_g000011 Rmu_sc0002245.1_g000025 Rmu_sc0002245.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001110
rosa_rugosa	Rorug05G0484600 Rorug05G0484700
rosa_samantha	Rh5AG534000 Rh5AG535700 Rh5AG536600 Rh5AG537100 Rh5AG537900 Rh5BG562000 Rh5BG562300 Rh5BG562700 Rh5CG584400 Rh5CG584700 Rh5CG584900
rosa_wichuraiana	Rw5G049880 Rw5G050470 Rw5G050480 Rw5G050550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	88
AciI	CCGC	3 cut(s)	33, 95, 335
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	4 cut(s)	187, 429, 564, 807
AcuI	CTGAAG	1 cut(s)	49
AfaI	GTAC	2 cut(s)	369, 747
AfiI	CCNNNNNNNGG	1 cut(s)	884
AjnI	CCWGG	2 cut(s)	411, 789
AluBI	AGCT	4 cut(s)	26, 53, 322, 700
AluI	AGCT	4 cut(s)	26, 53, 322, 700
Alw21I	GWGCWC	2 cut(s)	319, 697
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	98
ApeKI	GCWGC	5 cut(s)	26, 50, 127, 356, 734
ApoI	RAATTY	4 cut(s)	187, 429, 564, 807
AspLEI	GCGC	1 cut(s)	554
AspS9I	GGNCC	6 cut(s)	212, 446, 494, 590, 824, 872
AsuC2I	CCSGG	1 cut(s)	46
AvaII	GGWCC	6 cut(s)	212, 446, 494, 590, 824, 872
BaeGI	GKGCMC	2 cut(s)	424, 802
BbsI	GAAGAC	1 cut(s)	608
Bbv12I	GWGCWC	2 cut(s)	319, 697
BbvCI	CCTCAGC	1 cut(s)	54
BbvI	GCAGC	5 cut(s)	13, 62, 139, 368, 746
BciT130I	CCWGG	2 cut(s)	413, 791
BcnI	CCSGG	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	4 cut(s)	386, 474, 764, 852
BfoI	RGCGCY	1 cut(s)	555
BfuAI	ACCTGC	1 cut(s)	88
BisI	GCNGC	5 cut(s)	27, 51, 128, 357, 735
BlsI	GCNGC	5 cut(s)	28, 52, 129, 358, 736
Bme1390I	CCNGG	3 cut(s)	46, 413, 791
Bme18I	GGWCC	6 cut(s)	212, 446, 494, 590, 824, 872
BmgT120I	GGNCC	6 cut(s)	212, 446, 494, 590, 824, 872
BmiI	GGNNCC	4 cut(s)	406, 448, 784, 826
BmrFI	CCNGG	3 cut(s)	46, 413, 791
BmsI	GCATC	4 cut(s)	145, 266, 523, 644
BpiI	GAAGAC	1 cut(s)	608
Bpu10I	CCTNAGC	1 cut(s)	54
BpuMI	CCSGG	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	45, 411, 789
Bsc4I	CCNNNNNNNGG	1 cut(s)	884
Bse1I	ACTGG	1 cut(s)	371
BseBI	CCWGG	2 cut(s)	413, 791
BseDI	CCNNGG	3 cut(s)	45, 411, 789
BseLI	CCNNNNNNNGG	1 cut(s)	884
BseMII	CTCAG	3 cut(s)	45, 298, 676
BseNI	ACTGG	1 cut(s)	371
BseRI	GAGGAG	2 cut(s)	397, 775
BseSI	GKGCMC	2 cut(s)	424, 802
BseXI	GCAGC	5 cut(s)	13, 62, 139, 368, 746
BseYI	CCCAGC	2 cut(s)	322, 700
BsgI	GTGCAG	3 cut(s)	146, 375, 753
BsiHKAI	GWGCWC	2 cut(s)	319, 697
BsiSI	CCGG	1 cut(s)	45
BslFI	GGGAC	4 cut(s)	250, 302, 628, 680
BslI	CCNNNNNNNGG	1 cut(s)	884
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	4 cut(s)	250, 302, 628, 680
BsmI	GAATGC	2 cut(s)	455, 833
Bsp1286I	GDGCHC	4 cut(s)	319, 424, 697, 802
Bsp143I	GATC	1 cut(s)	103
BspACI	CCGC	3 cut(s)	33, 95, 335
BspCNI	CTCAG	3 cut(s)	46, 297, 675
BspLI	GGNNCC	4 cut(s)	406, 448, 784, 826
BspMI	ACCTGC	1 cut(s)	88
BspPI	GGATC	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	371
BssECI	CCNNGG	3 cut(s)	45, 411, 789
BssMI	GATC	1 cut(s)	103
Bst2UI	CCWGG	2 cut(s)	413, 791
Bst4CI	ACNGT	2 cut(s)	480, 858
BstC8I	GCNNGC	7 cut(s)	31, 132, 255, 361, 510, 633, 739
BstDEI	CTNAG	3 cut(s)	54, 284, 662
BstH2I	RGCGCY	1 cut(s)	555
BstHHI	GCGC	1 cut(s)	554
BstKTI	GATC	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 56, 341
BstNI	CCWGG	2 cut(s)	413, 791
BstNSI	RCATGY	3 cut(s)	90, 363, 741
BstSCI	CCNGG	3 cut(s)	44, 411, 789
BstSLI	GKGCMC	2 cut(s)	424, 802
BstV1I	GCAGC	5 cut(s)	13, 62, 139, 368, 746
BstV2I	GAAGAC	1 cut(s)	608
BveI	ACCTGC	1 cut(s)	88
Cac8I	GCNNGC	7 cut(s)	31, 132, 255, 361, 510, 633, 739
CfoI	GCGC	1 cut(s)	554
Cfr13I	GGNCC	6 cut(s)	212, 446, 494, 590, 824, 872
Csp6I	GTAC	2 cut(s)	368, 746
CviAII	CATG	7 cut(s)	87, 294, 360, 505, 672, 738, 883
CviJI	RGCY	9 cut(s)	26, 53, 273, 322, 405, 651, 700, 783, 888
CviKI_1	RGCY	9 cut(s)	26, 53, 273, 322, 405, 651, 700, 783, 888
CviQI	GTAC	2 cut(s)	368, 746
DdeI	CTNAG	3 cut(s)	54, 284, 662
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eco47I	GGWCC	6 cut(s)	212, 446, 494, 590, 824, 872
Eco57I	CTGAAG	1 cut(s)	49
EcoO109I	RGGNCCY	2 cut(s)	446, 824
EcoRII	CCWGG	2 cut(s)	411, 789
FaeI	CATG	7 cut(s)	90, 297, 363, 508, 675, 741, 886
FaqI	GGGAC	4 cut(s)	250, 302, 628, 680
FatI	CATG	7 cut(s)	86, 293, 359, 504, 671, 737, 882
FauI	CCCGC	2 cut(s)	26, 102
Fnu4HI	GCNGC	5 cut(s)	27, 51, 128, 357, 735
Fsp4HI	GCNGC	5 cut(s)	27, 51, 128, 357, 735
FspBI	CTAG	4 cut(s)	386, 474, 764, 852
GlaI	GCGC	1 cut(s)	553
GluI	GCNGC	5 cut(s)	27, 51, 128, 357, 735
GsaI	CCCAGC	2 cut(s)	326, 704
HaeII	RGCGCY	1 cut(s)	555
HapII	CCGG	1 cut(s)	45
HhaI	GCGC	1 cut(s)	554
Hin1II	CATG	7 cut(s)	90, 297, 363, 508, 675, 741, 886
Hin6I	GCGC	1 cut(s)	552
HinP1I	GCGC	1 cut(s)	552
HinfI	GANTC	2 cut(s)	290, 668
HpaII	CCGG	1 cut(s)	45
Hpy188III	TCNNGA	7 cut(s)	20, 441, 465, 474, 819, 843, 852
HpyCH4III	ACNGT	2 cut(s)	480, 858
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 56, 341
HpyF3I	CTNAG	3 cut(s)	54, 284, 662
Hsp92II	CATG	7 cut(s)	90, 297, 363, 508, 675, 741, 886
HspAI	GCGC	1 cut(s)	552
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	2 cut(s)	410, 788
Lsp1109I	GCAGC	5 cut(s)	13, 62, 139, 368, 746
LweI	GCATC	4 cut(s)	145, 266, 523, 644
MaeI	CTAG	4 cut(s)	386, 474, 764, 852
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	3 cut(s)	340, 613, 718
MhlI	GDGCHC	4 cut(s)	319, 424, 697, 802
MluCI	AATT	5 cut(s)	187, 429, 564, 807, 911
MlyI	GAGTC	2 cut(s)	284, 662
MmeI	TCCRAC	2 cut(s)	472, 850
MnlI	CCTC	8 cut(s)	49, 284, 418, 437, 507, 796, 815, 885
MseI	TTAA	8 cut(s)	8, 222, 302, 426, 680, 752, 804, 914
MspA1I	CMGCKG	3 cut(s)	53, 322, 700
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	3 cut(s)	46, 413, 791
Mva1269I	GAATGC	2 cut(s)	455, 833
MvaI	CCWGG	2 cut(s)	413, 791
MwoI	GCNNNNNNNGC	3 cut(s)	50, 56, 341
NciI	CCSGG	1 cut(s)	46
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	7 cut(s)	90, 297, 363, 508, 675, 741, 886
NlaIV	GGNNCC	4 cut(s)	406, 448, 784, 826
NspI	RCATGY	3 cut(s)	90, 363, 741
PaeI	GCATGC	2 cut(s)	363, 741
PctI	GAATGC	2 cut(s)	455, 833
PkrI	GCNGC	5 cut(s)	28, 52, 129, 358, 736
PleI	GAGTC	2 cut(s)	284, 662
PpsI	GAGTC	2 cut(s)	284, 662
PpuMI	RGGWCCY	2 cut(s)	446, 824
Psp5II	RGGWCCY	2 cut(s)	446, 824
Psp6I	CCWGG	2 cut(s)	411, 789
PspFI	CCCAGC	2 cut(s)	322, 700
PspGI	CCWGG	2 cut(s)	411, 789
PspN4I	GGNNCC	4 cut(s)	406, 448, 784, 826
PspPI	GGNCC	6 cut(s)	212, 446, 494, 590, 824, 872
PspPPI	RGGWCCY	2 cut(s)	446, 824
PsrI	GAACNNNNNNTAC	2 cut(s)	366, 398
PvuII	CAGCTG	3 cut(s)	53, 322, 700
RsaI	GTAC	2 cut(s)	369, 747
RsaNI	GTAC	2 cut(s)	368, 746
SaqAI	TTAA	8 cut(s)	8, 222, 302, 426, 680, 752, 804, 914
SatI	GCNGC	5 cut(s)	27, 51, 128, 357, 735
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	6 cut(s)	212, 446, 494, 590, 824, 872
SchI	GAGTC	2 cut(s)	284, 662
ScrFI	CCNGG	3 cut(s)	46, 413, 791
SduI	GDGCHC	4 cut(s)	319, 424, 697, 802
SetI	ASST	8 cut(s)	28, 55, 102, 324, 499, 702, 877, 925
SfaNI	GCATC	4 cut(s)	145, 266, 523, 644
SinI	GGWCC	6 cut(s)	212, 446, 494, 590, 824, 872
SphI	GCATGC	2 cut(s)	363, 741
Sse9I	AATT	5 cut(s)	187, 429, 564, 807, 911
SsiI	CCGC	3 cut(s)	33, 95, 335
SspMI	CTAG	4 cut(s)	386, 474, 764, 852
StyD4I	CCNGG	3 cut(s)	44, 411, 789
TaaI	ACNGT	2 cut(s)	480, 858
TasI	AATT	5 cut(s)	187, 429, 564, 807, 911
Tru1I	TTAA	8 cut(s)	8, 222, 302, 426, 680, 752, 804, 914
Tru9I	TTAA	8 cut(s)	8, 222, 302, 426, 680, 752, 804, 914
TseI	GCWGC	5 cut(s)	26, 50, 127, 356, 734
VpaK11BI	GGWCC	6 cut(s)	212, 446, 494, 590, 824, 872
XapI	RAATTY	4 cut(s)	187, 429, 564, 807
XbaI	TCTAGA	2 cut(s)	473, 851
XceI	RCATGY	3 cut(s)	90, 363, 741
XspI	CTAG	4 cut(s)	386, 474, 764, 852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.