Rh5CG584900

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004537
Physical Location & Seq
Forward (+)
82886592 .. 82892802
6211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG584900.1

Sequence Viewer

Length: 477 bp
ATGGAAGAGAAGCAGAGAGTAGCCACTGGAATTGCAAATGACCATCTGAGCAAGAAGAAGAAGACCAAGCCATGGTACGACGTGCCGTTTATTGAGCGTTGGCCGTCGCTAAAGCCCTTTGTGAATGGCGGACTCGCTGCGTTTCTTCAAGGCTTGACCCTTTATGTTCTTTTCGCTGCCATCTACTACTCCCCATTGTTATCTCCCATTCGCCGAAGTCCCAGATTTCTGGGCTTCAACATTCTTGCCAAGTCGTGTCCTGATGGAGTTGTAATTCGTACTTTATCTACAAGCCTTCAACTTGGATTATTCGAGTTGAGATTGAAGTGTAAAGCTTGGAGCAGCTCAAGTCAAGTAAGCTCAGAGATCATTCTGAAAAAGAAGTTGGAACTAGAAGACAAGCTGTTGGATGCTCCACTAGACACACTAGGTGCTGCTGCCTTGGCACTACACTATGCAAGTTTGGGAGAACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

158

Amino Acids

17.61

Weight (kDa)

9.6

Isoelectric Point (pI)

61.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 72
AciI CCGC 1 cut(s) 129
AclI AACGTT 1 cut(s) 472
AcoI YGGCCR 1 cut(s) 101
AdeI CACNNNGTG 1 cut(s) 431
AfaI GTAC 2 cut(s) 77, 280
AfiI CCNNNNNNNGG 1 cut(s) 72
AgsI TTSAA 4 cut(s) 149, 238, 299, 325
AjiI CACGTC 1 cut(s) 82
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AluBI AGCT 4 cut(s) 335, 345, 360, 403
AluI AGCT 4 cut(s) 335, 345, 360, 403
AoxI GGCC 1 cut(s) 101
ApeKI GCWGC 5 cut(s) 137, 176, 342, 434, 437
BbsI GAAGAC 2 cut(s) 68, 402
BbvI GCAGC 5 cut(s) 124, 163, 354, 421, 424
BccI CCATC 3 cut(s) 51, 188, 257
BceAI ACGGC 2 cut(s) 70, 88
BfaI CTAG 3 cut(s) 392, 419, 428
BisI GCNGC 5 cut(s) 138, 177, 343, 435, 438
BlsI GCNGC 5 cut(s) 139, 178, 344, 436, 439
BmgBI CACGTC 1 cut(s) 82
BmsI GCATC 1 cut(s) 400
BpiI GAAGAC 2 cut(s) 68, 402
BpuEI CTTGAG 1 cut(s) 331
BsaJI CCNNGG 2 cut(s) 71, 441
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 31
BseDI CCNNGG 2 cut(s) 71, 441
BseGI GGATG 1 cut(s) 415
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMII CTCAG 2 cut(s) 38, 375
BseNI ACTGG 1 cut(s) 31
BseXI GCAGC 5 cut(s) 124, 163, 354, 421, 424
BshFI GGCC 1 cut(s) 103
BslFI GGGAC 1 cut(s) 204
BslI CCNNNNNNNGG 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 204
BsnI GGCC 1 cut(s) 103
Bsp143I GATC 1 cut(s) 366
Bsp19I CCATGG 1 cut(s) 71
BspACI CCGC 1 cut(s) 129
BspANI GGCC 1 cut(s) 103
BspCNI CTCAG 2 cut(s) 39, 374
BsrI ACTGG 1 cut(s) 31
BssECI CCNNGG 2 cut(s) 71, 441
BssMI GATC 1 cut(s) 366
BssT1I CCWWGG 2 cut(s) 71, 441
BstDEI CTNAG 2 cut(s) 47, 361
BstDSI CCRYGG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 415
BstKTI GATC 1 cut(s) 369
BstMBI GATC 1 cut(s) 366
BstMWI GCNNNNNNNGC 1 cut(s) 443
BstV1I GCAGC 5 cut(s) 124, 163, 354, 421, 424
BstV2I GAAGAC 2 cut(s) 68, 402
BstXI CCANNNNNNTGG 1 cut(s) 229
BsuRI GGCC 1 cut(s) 103
BtgI CCRYGG 1 cut(s) 71
BtrI CACGTC 1 cut(s) 82
BtsCI GGATG 1 cut(s) 415
BtsIMutI CAGTG 1 cut(s) 24
Csp6I GTAC 2 cut(s) 76, 279
CspCI CAANNNNNGTGG 2 cut(s) 13, 48
CviAII CATG 1 cut(s) 72
CviQI GTAC 2 cut(s) 76, 279
DdeI CTNAG 2 cut(s) 47, 361
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
DraIII CACNNNGTG 1 cut(s) 431
EaeI YGGCCR 1 cut(s) 101
EciI GGCGGA 1 cut(s) 144
Eco130I CCWWGG 2 cut(s) 71, 441
EcoT14I CCWWGG 2 cut(s) 71, 441
ErhI CCWWGG 2 cut(s) 71, 441
FaeI CATG 1 cut(s) 75
FaiI YATR 3 cut(s) 73, 165, 456
FaqI GGGAC 1 cut(s) 204
FatI CATG 1 cut(s) 71
Fnu4HI GCNGC 5 cut(s) 138, 177, 343, 435, 438
FokI GGATG 1 cut(s) 422
Fsp4HI GCNGC 5 cut(s) 138, 177, 343, 435, 438
FspBI CTAG 3 cut(s) 392, 419, 428
GluI GCNGC 5 cut(s) 138, 177, 343, 435, 438
HaeIII GGCC 1 cut(s) 103
Hin1II CATG 1 cut(s) 75
HindIII AAGCTT 1 cut(s) 333
HinfI GANTC 1 cut(s) 132
Hpy188I TCNGA 3 cut(s) 48, 364, 375
Hpy188III TCNNGA 1 cut(s) 260
Hpy99I CGWCG 2 cut(s) 83, 109
HpyAV CCTTC 1 cut(s) 305
HpyCH4IV ACGT 2 cut(s) 81, 472
HpyCH4V TGCA 2 cut(s) 35, 458
HpyF10VI GCNNNNNNNGC 1 cut(s) 443
HpyF3I CTNAG 2 cut(s) 47, 361
HpySE526I ACGT 2 cut(s) 81, 472
Hsp92II CATG 1 cut(s) 75
Kzo9I GATC 1 cut(s) 366
LmnI GCTCC 2 cut(s) 339, 418
LpnPI CCDG 4 cut(s) 12, 215, 235, 273
Lsp1109I GCAGC 5 cut(s) 124, 163, 354, 421, 424
LweI GCATC 1 cut(s) 400
MaeI CTAG 3 cut(s) 392, 419, 428
MaeII ACGT 2 cut(s) 81, 472
MalI GATC 1 cut(s) 368
MboI GATC 1 cut(s) 366
MboII GAAGA 6 cut(s) 17, 67, 70, 73, 137, 407
MluCI AATT 2 cut(s) 30, 273
MlyI GAGTC 1 cut(s) 126
MmeI TCCRAC 2 cut(s) 366, 387
MwoI GCNNNNNNNGC 1 cut(s) 443
NcoI CCATGG 1 cut(s) 71
NdeII GATC 1 cut(s) 366
NlaIII CATG 1 cut(s) 75
PflMI CCANNNNNTGG 1 cut(s) 72
PkrI GCNGC 5 cut(s) 139, 178, 344, 436, 439
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
Psp1406I AACGTT 1 cut(s) 472
RsaI GTAC 2 cut(s) 77, 280
RsaNI GTAC 2 cut(s) 76, 279
SatI GCNGC 5 cut(s) 138, 177, 343, 435, 438
Sau3AI GATC 1 cut(s) 366
SchI GAGTC 1 cut(s) 126
SetI ASST 7 cut(s) 84, 337, 347, 362, 405, 433, 475
SfaNI GCATC 1 cut(s) 400
SmlI CTYRAG 1 cut(s) 346
SmoI CTYRAG 1 cut(s) 346
Sse9I AATT 2 cut(s) 30, 273
SsiI CCGC 1 cut(s) 129
SspMI CTAG 3 cut(s) 392, 419, 428
StyI CCWWGG 2 cut(s) 71, 441
TaiI ACGT 2 cut(s) 84, 475
TaqI TCGA 1 cut(s) 312
TasI AATT 2 cut(s) 30, 273
TscAI CASTG 1 cut(s) 31
TseI GCWGC 5 cut(s) 137, 176, 342, 434, 437
TspRI CASTG 1 cut(s) 31
Van91I CCANNNNNTGG 1 cut(s) 72
XspI CTAG 3 cut(s) 392, 419, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.