Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004537

Physical Location & Seq

Genomic Coordinates Reverse (-)

328773 .. 329737

Gene Structure 965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1003900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCCACCAATGTTACATCAGGAAGCTGCTTGTGGGCTGGCTGCTGGAGCAGTTGCAGCATTTATTAGGGTTCCATTGTATTTGCATGTAGGCTACTGTAAAGCTAAAATTGGATCGCCTAACTTTTTTGCAAAGCCTTGGACATTGGCGGGTTTAGCTAGGTACCCAAAAAGATGGACAAAAGGAATGGGTCCTTATGTGAGGTCAAGAACCAGCTTAGACTTCGGTATGCTTGCCTCCTATAATCCAAGTCTCCGTTATCTCAAGGAATCCTGTGGTTTCAGCCAATCTGACGCACAACTTGGTGCTAGTGCTATATCAGGTTTGTGTGCTGCAGCATGCGAAACAGCGTTTCGAAATATTAGCTCCCTGGATTCCGCACTTAAAATTCTAAAATCAAGAGGACCCCTTGCGTTCTGTACTGGGATTCCTTCTTCTTTTGTCATTTATGCACCTAATGTCATGGTAACATGGGCTGTTTTAGAAGAAATCAGGAAACAAGAAAAGTCAATAGGAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

174

Amino Acids

18.6

Weight (kDa)

9.53

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45510 FvH4_3g45510
malus_domestica	MD07G1230400.v1.1 MD11G1003900.v1.1
pyrus_communis	pycom07g20790 pycom11g00390
rosa_chinensis	RchiOBHm_Chr5g0083431 RchiOBHm_Chr5g0083561 RchiOBHm_Chr5g0083641
rosa_laevigata	RLG00000037032
rosa_multiflora	Rmu_sc0001444.1_g000005 Rmu_sc0001444.1_g000011 Rmu_sc0002245.1_g000025 Rmu_sc0002245.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001110
rosa_rugosa	Rorug05G0484600 Rorug05G0484700
rosa_samantha	Rh5AG534000 Rh5AG535700 Rh5AG536600 Rh5AG537100 Rh5AG537900 Rh5BG562000 Rh5BG562300 Rh5BG562700 Rh5CG584400 Rh5CG584700 Rh5CG584900
rosa_wichuraiana	Rw5G049880 Rw5G050470 Rw5G050480 Rw5G050550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	162
AccB1I	GGYRCC	1 cut(s)	162
AciI	CCGC	2 cut(s)	149, 378
AclWI	GGATC	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	387
AfaI	GTAC	2 cut(s)	164, 421
AjnI	CCWGG	1 cut(s)	369
AluBI	AGCT	5 cut(s)	26, 104, 158, 216, 366
AluI	AGCT	5 cut(s)	26, 104, 158, 216, 366
Alw26I	GTCTC	1 cut(s)	257
AlwI	GGATC	1 cut(s)	121
ApeKI	GCWGC	5 cut(s)	26, 41, 56, 332, 335
ApoI	RAATTY	1 cut(s)	387
Asp718I	GGTACC	1 cut(s)	162
AspS9I	GGNCC	2 cut(s)	191, 404
AsuII	TTCGAA	1 cut(s)	355
AvaII	GGWCC	2 cut(s)	191, 404
BanI	GGYRCC	1 cut(s)	162
BbvI	GCAGC	5 cut(s)	13, 28, 68, 319, 347
BccI	CCATC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	2 cut(s)	159, 309
BfmI	CTRYAG	1 cut(s)	333
BisI	GCNGC	5 cut(s)	27, 42, 57, 333, 336
BlsI	GCNGC	5 cut(s)	28, 43, 58, 334, 337
Bme1390I	CCNGG	1 cut(s)	371
Bme18I	GGWCC	2 cut(s)	191, 404
BmgT120I	GGNCC	2 cut(s)	191, 404
BmiI	GGNNCC	4 cut(s)	72, 164, 192, 406
BmrFI	CCNGG	1 cut(s)	371
BmrI	ACTGGG	1 cut(s)	432
BmuI	ACTGGG	1 cut(s)	432
BpmI	CTGGAG	1 cut(s)	66
Bpu14I	TTCGAA	1 cut(s)	355
BpuEI	CTTGAG	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	137, 369
Bse1I	ACTGG	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	2 cut(s)	137, 369
BseNI	ACTGG	1 cut(s)	427
BseXI	GCAGC	5 cut(s)	13, 28, 68, 319, 347
BshNI	GGYRCC	1 cut(s)	162
BsmAI	GTCTC	1 cut(s)	257
Bsp119I	TTCGAA	1 cut(s)	355
Bsp143I	GATC	1 cut(s)	113
BspACI	CCGC	2 cut(s)	149, 378
BspLI	GGNNCC	4 cut(s)	72, 164, 192, 406
BspMAI	CTGCAG	1 cut(s)	337
BspPI	GGATC	1 cut(s)	121
BspT104I	TTCGAA	1 cut(s)	355
BspT107I	GGYRCC	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	427
BssECI	CCNNGG	2 cut(s)	137, 369
BssMI	GATC	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	1 cut(s)	98
BstBI	TTCGAA	1 cut(s)	355
BstC8I	GCNNGC	3 cut(s)	39, 234, 340
BstDEI	CTNAG	1 cut(s)	217
BstKTI	GATC	1 cut(s)	116
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	1 cut(s)	113
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 56, 155
BstNI	CCWGG	1 cut(s)	371
BstNSI	RCATGY	2 cut(s)	89, 342
BstSCI	CCNGG	1 cut(s)	369
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	5 cut(s)	13, 28, 68, 319, 347
BstXI	CCANNNNNNTGG	1 cut(s)	174
Cac8I	GCNNGC	3 cut(s)	39, 234, 340
Cfr13I	GGNCC	2 cut(s)	191, 404
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	163, 420
CviAII	CATG	4 cut(s)	86, 339, 463, 471
CviQI	GTAC	2 cut(s)	163, 420
DdeI	CTNAG	1 cut(s)	217
DpnI	GATC	1 cut(s)	115
DpnII	GATC	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	137
Eco47I	GGWCC	2 cut(s)	191, 404
EcoO109I	RGGNCCY	2 cut(s)	191, 404
EcoRII	CCWGG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	4 cut(s)	89, 342, 466, 474
FaiI	YATR	9 cut(s)	87, 198, 230, 243, 317, 340, 450, 464, 472
FatI	CATG	4 cut(s)	85, 338, 462, 470
FauI	CCCGC	1 cut(s)	142
Fnu4HI	GCNGC	5 cut(s)	27, 42, 57, 333, 336
Fsp4HI	GCNGC	5 cut(s)	27, 42, 57, 333, 336
FspBI	CTAG	2 cut(s)	159, 309
GluI	GCNGC	5 cut(s)	27, 42, 57, 333, 336
GsuI	CTGGAG	1 cut(s)	66
HgaI	GACGC	1 cut(s)	302
Hin1II	CATG	4 cut(s)	89, 342, 466, 474
HinfI	GANTC	3 cut(s)	269, 374, 427
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	4 cut(s)	20, 207, 399, 493
HpyAV	CCTTC	1 cut(s)	441
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4V	TGCA	5 cut(s)	56, 85, 131, 335, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 56, 155
HpyF3I	CTNAG	1 cut(s)	217
Hsp92II	CATG	4 cut(s)	89, 342, 466, 474
KpnI	GGTACC	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	113
LmnI	GCTCC	2 cut(s)	47, 371
Lsp1109I	GCAGC	5 cut(s)	13, 28, 68, 319, 347
MaeI	CTAG	2 cut(s)	159, 309
MaeIII	GTNAC	2 cut(s)	12, 466
MalI	GATC	1 cut(s)	115
MboI	GATC	1 cut(s)	113
MboII	GAAGA	2 cut(s)	426, 497
MluCI	AATT	2 cut(s)	108, 387
MnlI	CCTC	4 cut(s)	195, 247, 395, 509
MseI	TTAA	1 cut(s)	384
MspR9I	CCNGG	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	3 cut(s)	47, 56, 155
NdeII	GATC	1 cut(s)	113
NlaIII	CATG	4 cut(s)	89, 342, 466, 474
NlaIV	GGNNCC	4 cut(s)	72, 164, 192, 406
NspI	RCATGY	2 cut(s)	89, 342
NspV	TTCGAA	1 cut(s)	355
PaeI	GCATGC	1 cut(s)	342
PfeI	GAWTC	3 cut(s)	269, 374, 427
PkrI	GCNGC	5 cut(s)	28, 43, 58, 334, 337
PpuMI	RGGWCCY	2 cut(s)	191, 404
Psp5II	RGGWCCY	2 cut(s)	191, 404
Psp6I	CCWGG	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	4 cut(s)	72, 164, 192, 406
PspPI	GGNCC	2 cut(s)	191, 404
PspPPI	RGGWCCY	2 cut(s)	191, 404
PstI	CTGCAG	1 cut(s)	337
RsaI	GTAC	2 cut(s)	164, 421
RsaNI	GTAC	2 cut(s)	163, 420
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	5 cut(s)	27, 42, 57, 333, 336
Sau3AI	GATC	1 cut(s)	113
Sau96I	GGNCC	2 cut(s)	191, 404
ScrFI	CCNGG	1 cut(s)	371
SetI	ASST	9 cut(s)	28, 106, 160, 164, 206, 218, 325, 368, 457
SfcI	CTRYAG	1 cut(s)	333
SfuI	TTCGAA	1 cut(s)	355
SinI	GGWCC	2 cut(s)	191, 404
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
SphI	GCATGC	1 cut(s)	342
Sse9I	AATT	2 cut(s)	108, 387
SsiI	CCGC	2 cut(s)	149, 378
SspI	AATATT	1 cut(s)	361
SspMI	CTAG	2 cut(s)	159, 309
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	98
TaqI	TCGA	1 cut(s)	355
TasI	AATT	2 cut(s)	108, 387
TatI	WGTACW	1 cut(s)	419
TfiI	GAWTC	3 cut(s)	269, 374, 427
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TseI	GCWGC	5 cut(s)	26, 41, 56, 332, 335
TspGWI	ACGGA	1 cut(s)	245
VpaK11BI	GGWCC	2 cut(s)	191, 404
XapI	RAATTY	1 cut(s)	387
XceI	RCATGY	2 cut(s)	89, 342
XspI	CTAG	2 cut(s)	159, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.