Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004537

Physical Location & Seq

Genomic Coordinates Forward (+)

87147787 .. 87160393

Gene Structure 12607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G050480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGCACCCTCTTCCAAATGATATGAGCTTCATCATAGACCAGAACAAGAAGAAGAAGACCAAGCCAGAGTACGACGTACCGTTTATTGAGCGTTGGCCGTCGCTAAAGCCCTTCATCAATGGCGGACTCGCTGCGTTTCTTCAAGGCTTGACCCTTTATGTTCCTTTCGCTGCCATCTACTACTCCCCATTGTTATCTCCCATTCGCCGAAGTCCCAGATTTCTGGGTTTCAACATTCTTGCCAAGTCGTGTCCTGATGGGATTGTGATCCGTACTTTATCTACAAGCCTTCAACTTGGATTATTCGAGACTCTAAGAAACAAAGCAATTGCTACCAATGATGGGATGGCATTAACTCTTTATCAGGAAGCTGCTTGCGGGTTGATTGCCGGGGCAGCTGAGGCATACTTCAGTTTTCCATTTGTTTCTGCATGTCTCCCGCAGGTTGATCCCACGACTTTATCAGTAGTGCAGCGTGCCAAATACAGAAACATATTTGATGCTTTCTACTCTATGAGTGCCAATAGAAAAATTTCAGCACTATGGACAAATGCTGGTCCTTATGTGAAGACAAGAATGGGGACAAATGTGGGTATGCTCGCATCATATAATCCAAGCCTCTGTTATCTCAGGGACTCGTGTGGTTTAAGCGAAACAAGAGCACAGCTGGGTGCAAGTGCGGTTTCAGCGTTCTTCGGTGCAACATGCTCTGTACCAGTAAAAAATGTTCTAGCACAAGGGGAAAGTGGCTCCTCCCTGGATTGTGCCCTTAAAATTCTAAAATCAAGAGGACCCCTTGCATTCTTTTCAGGATTTTCTAGACAGTTTGCACTTGTTGGACCTCCTATCATGATTCTGTGGTTTGCTTATGAAAATGTTCGGAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

296

Amino Acids

32.42

Weight (kDa)

9.51

Isoelectric Point (pI)

53.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45510 FvH4_3g45510
malus_domestica	MD07G1230400.v1.1 MD11G1003900.v1.1
pyrus_communis	pycom07g20790 pycom11g00390
rosa_chinensis	RchiOBHm_Chr5g0083431 RchiOBHm_Chr5g0083561 RchiOBHm_Chr5g0083641
rosa_laevigata	RLG00000037032
rosa_multiflora	Rmu_sc0001444.1_g000005 Rmu_sc0001444.1_g000011 Rmu_sc0002245.1_g000025 Rmu_sc0002245.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001110
rosa_rugosa	Rorug05G0484600 Rorug05G0484700
rosa_samantha	Rh5AG534000 Rh5AG535700 Rh5AG536600 Rh5AG537100 Rh5AG537900 Rh5BG562000 Rh5BG562300 Rh5BG562700 Rh5CG584400 Rh5CG584700 Rh5CG584900
rosa_wichuraiana	Rw5G049880 Rw5G050470 Rw5G050480 Rw5G050550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	433
AciI	CCGC	4 cut(s)	123, 378, 440, 680
AclWI	GGATC	2 cut(s)	262, 443
AcoI	YGGCCR	1 cut(s)	95
AcsI	RAATTY	2 cut(s)	531, 774
AcuI	CTGAAG	1 cut(s)	394
AfaI	GTAC	4 cut(s)	71, 78, 274, 714
AfiI	CCNNNNNNNGG	1 cut(s)	342
AgsI	TTSAA	3 cut(s)	143, 232, 293
AjnI	CCWGG	1 cut(s)	756
AluBI	AGCT	4 cut(s)	27, 371, 398, 667
AluI	AGCT	4 cut(s)	27, 371, 398, 667
Alw21I	GWGCWC	1 cut(s)	664
Alw26I	GTCTC	2 cut(s)	302, 440
AlwI	GGATC	2 cut(s)	262, 443
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	5 cut(s)	131, 170, 371, 395, 472
ApoI	RAATTY	2 cut(s)	531, 774
Asp700I	GAANNNNTTC	2 cut(s)	532, 876
AspS9I	GGNCC	3 cut(s)	557, 791, 839
AsuC2I	CCSGG	1 cut(s)	391
AvaII	GGWCC	3 cut(s)	557, 791, 839
BaeGI	GKGCMC	1 cut(s)	769
BauI	CACGAG	1 cut(s)	637
BbsI	GAAGAC	2 cut(s)	62, 575
Bbv12I	GWGCWC	1 cut(s)	664
BbvCI	CCTCAGC	1 cut(s)	399
BbvI	GCAGC	5 cut(s)	118, 157, 358, 407, 484
BccI	CCATC	4 cut(s)	182, 251, 335, 340
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	1 cut(s)	758
BcnI	CCSGG	1 cut(s)	391
BcoDI	GTCTC	2 cut(s)	302, 440
BfaI	CTAG	2 cut(s)	731, 819
BfuAI	ACCTGC	1 cut(s)	433
BisI	GCNGC	5 cut(s)	132, 171, 372, 396, 473
BlsI	GCNGC	5 cut(s)	133, 172, 373, 397, 474
Bme1390I	CCNGG	2 cut(s)	391, 758
Bme18I	GGWCC	3 cut(s)	557, 791, 839
BmgT120I	GGNCC	3 cut(s)	557, 791, 839
BmiI	GGNNCC	2 cut(s)	751, 793
BmrFI	CCNGG	2 cut(s)	391, 758
BmsI	GCATC	2 cut(s)	490, 611
BpiI	GAAGAC	2 cut(s)	62, 575
Bpu10I	CCTNAGC	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	391
BsaBI	GATNNNNATC	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	390, 756
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse1I	ACTGG	1 cut(s)	716
Bse8I	GATNNNNATC	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	758
BseDI	CCNNGG	2 cut(s)	390, 756
BseGI	GGATG	1 cut(s)	351
BseJI	GATNNNNATC	1 cut(s)	266
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	390, 643
BseNI	ACTGG	1 cut(s)	716
BseRI	GAGGAG	1 cut(s)	742
BseSI	GKGCMC	1 cut(s)	769
BseXI	GCAGC	5 cut(s)	118, 157, 358, 407, 484
BseYI	CCCAGC	1 cut(s)	667
BsgI	GTGCAG	1 cut(s)	491
BshFI	GGCC	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	664
BsiSI	CCGG	1 cut(s)	390
BslFI	GGGAC	3 cut(s)	198, 595, 647
BslI	CCNNNNNNNGG	1 cut(s)	342
BsmAI	GTCTC	2 cut(s)	302, 440
BsmFI	GGGAC	3 cut(s)	198, 595, 647
BsmI	GAATGC	1 cut(s)	800
BsnI	GGCC	1 cut(s)	97
Bsp1286I	GDGCHC	2 cut(s)	664, 769
Bsp143I	GATC	2 cut(s)	267, 448
BspACI	CCGC	4 cut(s)	123, 378, 440, 680
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	2 cut(s)	391, 642
BspHI	TCATGA	1 cut(s)	849
BspLI	GGNNCC	2 cut(s)	751, 793
BspMI	ACCTGC	1 cut(s)	433
BspPI	GGATC	2 cut(s)	262, 443
BsrI	ACTGG	1 cut(s)	716
BssECI	CCNNGG	2 cut(s)	390, 756
BssMI	GATC	2 cut(s)	267, 448
BssSI	CACGAG	1 cut(s)	637
Bst2BI	CACGAG	1 cut(s)	637
Bst2UI	CCWGG	1 cut(s)	758
Bst4CI	ACNGT	2 cut(s)	81, 825
Bst6I	CTCTTC	1 cut(s)	15
BstC8I	GCNNGC	3 cut(s)	376, 477, 600
BstDEI	CTNAG	3 cut(s)	314, 399, 629
BstF5I	GGATG	1 cut(s)	351
BstKTI	GATC	2 cut(s)	270, 451
BstMAI	GTCTC	2 cut(s)	302, 440
BstMBI	GATC	2 cut(s)	267, 448
BstMWI	GCNNNNNNNGC	3 cut(s)	395, 401, 686
BstNI	CCWGG	1 cut(s)	758
BstNSI	RCATGY	2 cut(s)	435, 708
BstSCI	CCNGG	2 cut(s)	389, 756
BstSLI	GKGCMC	1 cut(s)	769
BstV1I	GCAGC	5 cut(s)	118, 157, 358, 407, 484
BstV2I	GAAGAC	2 cut(s)	62, 575
BstXI	CCANNNNNNTGG	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	351
BveI	ACCTGC	1 cut(s)	433
Cac8I	GCNNGC	3 cut(s)	376, 477, 600
CciI	TCATGA	1 cut(s)	849
Cfr13I	GGNCC	3 cut(s)	557, 791, 839
Csp6I	GTAC	4 cut(s)	70, 77, 273, 713
CviAII	CATG	3 cut(s)	432, 705, 850
CviQI	GTAC	4 cut(s)	70, 77, 273, 713
DdeI	CTNAG	3 cut(s)	314, 399, 629
DpnI	GATC	2 cut(s)	269, 450
DpnII	GATC	2 cut(s)	267, 448
EaeI	YGGCCR	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
EciI	GGCGGA	1 cut(s)	138
Eco47I	GGWCC	3 cut(s)	557, 791, 839
Eco57I	CTGAAG	1 cut(s)	394
EcoO109I	RGGNCCY	1 cut(s)	791
EcoRII	CCWGG	1 cut(s)	756
FaeI	CATG	3 cut(s)	435, 708, 853
FaqI	GGGAC	3 cut(s)	198, 595, 647
FatI	CATG	3 cut(s)	431, 704, 849
FauI	CCCGC	2 cut(s)	371, 447
Fnu4HI	GCNGC	5 cut(s)	132, 171, 372, 396, 473
FokI	GGATG	1 cut(s)	358
Fsp4HI	GCNGC	5 cut(s)	132, 171, 372, 396, 473
FspBI	CTAG	2 cut(s)	731, 819
GluI	GCNGC	5 cut(s)	132, 171, 372, 396, 473
GsaI	CCCAGC	1 cut(s)	671
HaeIII	GGCC	1 cut(s)	97
HapII	CCGG	1 cut(s)	390
Hin1II	CATG	3 cut(s)	435, 708, 853
HinfI	GANTC	4 cut(s)	126, 310, 635, 853
HpaII	CCGG	1 cut(s)	390
Hpy188I	TCNGA	1 cut(s)	882
Hpy188III	TCNNGA	7 cut(s)	254, 307, 365, 786, 810, 819, 850
Hpy99I	CGWCG	2 cut(s)	77, 103
HpyAV	CCTTC	2 cut(s)	121, 299
HpyCH4III	ACNGT	2 cut(s)	81, 825
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	7 cut(s)	4, 431, 472, 674, 701, 800, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	395, 401, 686
HpyF3I	CTNAG	3 cut(s)	314, 399, 629
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	3 cut(s)	435, 708, 853
Kzo9I	GATC	2 cut(s)	267, 448
LmnI	GCTCC	1 cut(s)	755
Lsp1109I	GCAGC	5 cut(s)	118, 157, 358, 407, 484
LweI	GCATC	2 cut(s)	490, 611
MaeI	CTAG	2 cut(s)	731, 819
MaeII	ACGT	1 cut(s)	75
MalI	GATC	2 cut(s)	269, 450
MboI	GATC	2 cut(s)	267, 448
MboII	GAAGA	6 cut(s)	61, 64, 67, 131, 580, 685
MfeI	CAATTG	1 cut(s)	327
MhlI	GDGCHC	2 cut(s)	664, 769
MluCI	AATT	3 cut(s)	327, 531, 774
MlyI	GAGTC	3 cut(s)	120, 304, 629
MmeI	TCCRAC	1 cut(s)	817
MnlI	CCTC	6 cut(s)	18, 394, 629, 763, 782, 852
MroXI	GAANNNNTTC	2 cut(s)	532, 876
MseI	TTAA	3 cut(s)	353, 647, 771
MspA1I	CMGCKG	2 cut(s)	398, 667
MspI	CCGG	1 cut(s)	390
MspR9I	CCNGG	2 cut(s)	391, 758
MunI	CAATTG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	800
MvaI	CCWGG	1 cut(s)	758
MwoI	GCNNNNNNNGC	3 cut(s)	395, 401, 686
NciI	CCSGG	1 cut(s)	391
NdeII	GATC	2 cut(s)	267, 448
NlaIII	CATG	3 cut(s)	435, 708, 853
NlaIV	GGNNCC	2 cut(s)	751, 793
NspI	RCATGY	2 cut(s)	435, 708
PagI	TCATGA	1 cut(s)	849
PctI	GAATGC	1 cut(s)	800
PdmI	GAANNNNTTC	2 cut(s)	532, 876
PfeI	GAWTC	1 cut(s)	853
PkrI	GCNGC	5 cut(s)	133, 172, 373, 397, 474
PleI	GAGTC	3 cut(s)	120, 304, 629
PpsI	GAGTC	3 cut(s)	120, 304, 629
PpuMI	RGGWCCY	1 cut(s)	791
Psp5II	RGGWCCY	1 cut(s)	791
Psp6I	CCWGG	1 cut(s)	756
PspFI	CCCAGC	1 cut(s)	667
PspGI	CCWGG	1 cut(s)	756
PspN4I	GGNNCC	2 cut(s)	751, 793
PspPI	GGNCC	3 cut(s)	557, 791, 839
PspPPI	RGGWCCY	1 cut(s)	791
PsrI	GAACNNNNNNTAC	2 cut(s)	711, 743
PvuII	CAGCTG	2 cut(s)	398, 667
RsaI	GTAC	4 cut(s)	71, 78, 274, 714
RsaNI	GTAC	4 cut(s)	70, 77, 273, 713
SaqAI	TTAA	3 cut(s)	353, 647, 771
SatI	GCNGC	5 cut(s)	132, 171, 372, 396, 473
Sau3AI	GATC	2 cut(s)	267, 448
Sau96I	GGNCC	3 cut(s)	557, 791, 839
SchI	GAGTC	3 cut(s)	120, 304, 629
ScrFI	CCNGG	2 cut(s)	391, 758
SduI	GDGCHC	2 cut(s)	664, 769
SetI	ASST	7 cut(s)	29, 78, 373, 400, 447, 669, 844
SfaNI	GCATC	2 cut(s)	490, 611
SinI	GGWCC	3 cut(s)	557, 791, 839
Sse9I	AATT	3 cut(s)	327, 531, 774
SsiI	CCGC	4 cut(s)	123, 378, 440, 680
SspMI	CTAG	2 cut(s)	731, 819
StyD4I	CCNGG	2 cut(s)	389, 756
TaaI	ACNGT	2 cut(s)	81, 825
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	306
TasI	AATT	3 cut(s)	327, 531, 774
TfiI	GAWTC	1 cut(s)	853
Tru1I	TTAA	3 cut(s)	353, 647, 771
Tru9I	TTAA	3 cut(s)	353, 647, 771
TseI	GCWGC	5 cut(s)	131, 170, 371, 395, 472
TspDTI	ATGAA	3 cut(s)	19, 103, 885
TspGWI	ACGGA	1 cut(s)	260
VpaK11BI	GGWCC	3 cut(s)	557, 791, 839
XapI	RAATTY	2 cut(s)	531, 774
XbaI	TCTAGA	1 cut(s)	818
XceI	RCATGY	2 cut(s)	435, 708
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XmnI	GAANNNNTTC	2 cut(s)	532, 876
XspI	CTAG	2 cut(s)	731, 819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.