Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004537

Physical Location & Seq

Genomic Coordinates Reverse (-)

86479702 .. 86481885

Gene Structure 2184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G049880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGAAGAGAAGCAGAGAGTAGCCACTAGAATTGCAAATGATATGAGCTTCATCATAGACCAGAACAAGAAGAAGAAGACCAAGCCAGAGCACGACGTACCGTTTATTGAGCGTTGGCCGTCGCTAAAGCCCTTCGTCAATGGCGGACTCGCTGCGTTTCTTCAAGGCTTGACCCTTTATGTTCCTTTCGCTGCCATCTACTACTCCCCATTGTTATCTCCCATTCGCCGAAGTCCCAGATTTATGGGCTTCAACATTCTTGCCAAGTCGTGTCCTGATGGGATTGTGATCCGTACTTTATCTACAAGCCTTCAACTTGGATTATTCGAGACTCTAAGAAACAAAGCAATTGCTACCAATGATGGAATGGCATTAACTCTTTATCGGGAAGCTGCTTGCGGGTTGATTGCCGGGGCAGCTGAGGCATACTTCAGTTTTCCATTTGTTTCTGCATGTCTCCCGCAGGTTGATCCCACGACTTTATCAGTAGTGCAGCGTGCCAAATACAGAAACATATTTGATGCTTTCTACTCTATGAGTGCCAATAGAAAAATTTCAGCACTATGGACAAATGCTGGTCCTTATGTGAAGACAAGAATGGGGACTAATGTGGGTATGCTCGCATCATATAATCCAAGCCTCTGTTATCTCAGGGACTCGTGTGGTTTAAGCGAAACAAGAGCACAGCTGGGTGCAAGTGCAGTTTCAGCGTTCTTCGGTGCAACATGCTCTGTACCAGTAAAAAATGTTCTAGCACAAGGGGAAAGTGGCTCCTCCCTGGATTGTGCCCTTAAAATTCTAAAATCAAGAGGACCCCTTGCATTCTTTTCAGGATTTTCTAGACAGTTTGCACTTGTTGGACCTCCTATCATGATTCTGTGGTTTGCTTATGAAAATGTTCGGAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

303

Amino Acids

33.27

Weight (kDa)

9.64

Isoelectric Point (pI)

50.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45510 FvH4_3g45510
malus_domestica	MD07G1230400.v1.1 MD11G1003900.v1.1
pyrus_communis	pycom07g20790 pycom11g00390
rosa_chinensis	RchiOBHm_Chr5g0083431 RchiOBHm_Chr5g0083561 RchiOBHm_Chr5g0083641
rosa_laevigata	RLG00000037032
rosa_multiflora	Rmu_sc0001444.1_g000005 Rmu_sc0001444.1_g000011 Rmu_sc0002245.1_g000025 Rmu_sc0002245.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001110
rosa_rugosa	Rorug05G0484600 Rorug05G0484700
rosa_samantha	Rh5AG534000 Rh5AG535700 Rh5AG536600 Rh5AG537100 Rh5AG537900 Rh5BG562000 Rh5BG562300 Rh5BG562700 Rh5CG584400 Rh5CG584700 Rh5CG584900
rosa_wichuraiana	Rw5G049880 Rw5G050470 Rw5G050480 Rw5G050550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	454
AciI	CCGC	3 cut(s)	144, 399, 461
AclWI	GGATC	2 cut(s)	283, 464
AcoI	YGGCCR	1 cut(s)	116
AcsI	RAATTY	2 cut(s)	552, 795
AcuI	CTGAAG	1 cut(s)	415
AfaI	GTAC	3 cut(s)	99, 295, 735
AgsI	TTSAA	3 cut(s)	164, 253, 314
AjnI	CCWGG	1 cut(s)	777
AluBI	AGCT	4 cut(s)	48, 392, 419, 688
AluI	AGCT	4 cut(s)	48, 392, 419, 688
Alw21I	GWGCWC	2 cut(s)	93, 685
Alw26I	GTCTC	2 cut(s)	323, 461
AlwI	GGATC	2 cut(s)	283, 464
AoxI	GGCC	1 cut(s)	116
ApeKI	GCWGC	5 cut(s)	152, 191, 392, 416, 493
ApoI	RAATTY	2 cut(s)	552, 795
Asp700I	GAANNNNTTC	2 cut(s)	553, 897
AspS9I	GGNCC	3 cut(s)	578, 812, 860
AsuC2I	CCSGG	1 cut(s)	412
AvaII	GGWCC	3 cut(s)	578, 812, 860
BaeGI	GKGCMC	1 cut(s)	790
BauI	CACGAG	1 cut(s)	658
BbsI	GAAGAC	2 cut(s)	83, 596
Bbv12I	GWGCWC	2 cut(s)	93, 685
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	5 cut(s)	139, 178, 379, 428, 505
BccI	CCATC	3 cut(s)	203, 272, 356
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	779
BcnI	CCSGG	1 cut(s)	412
BcoDI	GTCTC	2 cut(s)	323, 461
BfaI	CTAG	3 cut(s)	27, 752, 840
BfuAI	ACCTGC	1 cut(s)	454
BisI	GCNGC	5 cut(s)	153, 192, 393, 417, 494
BlsI	GCNGC	5 cut(s)	154, 193, 394, 418, 495
Bme1390I	CCNGG	2 cut(s)	412, 779
Bme18I	GGWCC	3 cut(s)	578, 812, 860
BmgT120I	GGNCC	3 cut(s)	578, 812, 860
BmiI	GGNNCC	2 cut(s)	772, 814
BmrFI	CCNGG	2 cut(s)	412, 779
BmsI	GCATC	2 cut(s)	511, 632
BpiI	GAAGAC	2 cut(s)	83, 596
Bpu10I	CCTNAGC	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	412
BsaBI	GATNNNNATC	1 cut(s)	287
BsaJI	CCNNGG	2 cut(s)	411, 777
Bse1I	ACTGG	1 cut(s)	737
Bse8I	GATNNNNATC	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	779
BseDI	CCNNGG	2 cut(s)	411, 777
BseJI	GATNNNNATC	1 cut(s)	287
BseMII	CTCAG	2 cut(s)	411, 664
BseNI	ACTGG	1 cut(s)	737
BseRI	GAGGAG	1 cut(s)	763
BseSI	GKGCMC	1 cut(s)	790
BseXI	GCAGC	5 cut(s)	139, 178, 379, 428, 505
BseYI	CCCAGC	1 cut(s)	688
BsgI	GTGCAG	2 cut(s)	512, 720
BshFI	GGCC	1 cut(s)	118
BsiHKAI	GWGCWC	2 cut(s)	93, 685
BsiSI	CCGG	1 cut(s)	411
BslFI	GGGAC	3 cut(s)	219, 616, 668
BsmAI	GTCTC	2 cut(s)	323, 461
BsmFI	GGGAC	3 cut(s)	219, 616, 668
BsmI	GAATGC	1 cut(s)	821
BsnI	GGCC	1 cut(s)	118
Bsp1286I	GDGCHC	3 cut(s)	93, 685, 790
Bsp143I	GATC	2 cut(s)	288, 469
BspACI	CCGC	3 cut(s)	144, 399, 461
BspANI	GGCC	1 cut(s)	118
BspCNI	CTCAG	2 cut(s)	412, 663
BspHI	TCATGA	1 cut(s)	870
BspLI	GGNNCC	2 cut(s)	772, 814
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	2 cut(s)	283, 464
BsrI	ACTGG	1 cut(s)	737
BssECI	CCNNGG	2 cut(s)	411, 777
BssMI	GATC	2 cut(s)	288, 469
BssSI	CACGAG	1 cut(s)	658
Bst2BI	CACGAG	1 cut(s)	658
Bst2UI	CCWGG	1 cut(s)	779
Bst4CI	ACNGT	2 cut(s)	102, 846
BstC8I	GCNNGC	3 cut(s)	397, 498, 621
BstDEI	CTNAG	3 cut(s)	335, 420, 650
BstKTI	GATC	2 cut(s)	291, 472
BstMAI	GTCTC	2 cut(s)	323, 461
BstMBI	GATC	2 cut(s)	288, 469
BstMWI	GCNNNNNNNGC	3 cut(s)	416, 422, 707
BstNI	CCWGG	1 cut(s)	779
BstNSI	RCATGY	2 cut(s)	456, 729
BstSCI	CCNGG	2 cut(s)	410, 777
BstSLI	GKGCMC	1 cut(s)	790
BstV1I	GCAGC	5 cut(s)	139, 178, 379, 428, 505
BstV2I	GAAGAC	2 cut(s)	83, 596
BstXI	CCANNNNNNTGG	1 cut(s)	244
BsuRI	GGCC	1 cut(s)	118
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	3 cut(s)	397, 498, 621
CciI	TCATGA	1 cut(s)	870
Cfr13I	GGNCC	3 cut(s)	578, 812, 860
Csp6I	GTAC	3 cut(s)	98, 294, 734
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviAII	CATG	3 cut(s)	453, 726, 871
CviQI	GTAC	3 cut(s)	98, 294, 734
DdeI	CTNAG	3 cut(s)	335, 420, 650
DpnI	GATC	2 cut(s)	290, 471
DpnII	GATC	2 cut(s)	288, 469
EaeI	YGGCCR	1 cut(s)	116
EciI	GGCGGA	1 cut(s)	159
Eco47I	GGWCC	3 cut(s)	578, 812, 860
Eco57I	CTGAAG	1 cut(s)	415
EcoO109I	RGGNCCY	1 cut(s)	812
EcoRII	CCWGG	1 cut(s)	777
FaeI	CATG	3 cut(s)	456, 729, 874
FaqI	GGGAC	3 cut(s)	219, 616, 668
FatI	CATG	3 cut(s)	452, 725, 870
FauI	CCCGC	2 cut(s)	392, 468
Fnu4HI	GCNGC	5 cut(s)	153, 192, 393, 417, 494
Fsp4HI	GCNGC	5 cut(s)	153, 192, 393, 417, 494
FspBI	CTAG	3 cut(s)	27, 752, 840
GluI	GCNGC	5 cut(s)	153, 192, 393, 417, 494
GsaI	CCCAGC	1 cut(s)	692
HaeIII	GGCC	1 cut(s)	118
HapII	CCGG	1 cut(s)	411
Hin1II	CATG	3 cut(s)	456, 729, 874
HinfI	GANTC	4 cut(s)	147, 331, 656, 874
HpaII	CCGG	1 cut(s)	411
Hpy188I	TCNGA	1 cut(s)	903
Hpy188III	TCNNGA	7 cut(s)	275, 328, 386, 807, 831, 840, 871
Hpy99I	CGWCG	2 cut(s)	98, 124
HpyAV	CCTTC	2 cut(s)	142, 320
HpyCH4III	ACNGT	2 cut(s)	102, 846
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	8 cut(s)	35, 452, 493, 695, 701, 722, 821, 851
HpyF10VI	GCNNNNNNNGC	3 cut(s)	416, 422, 707
HpyF3I	CTNAG	3 cut(s)	335, 420, 650
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	3 cut(s)	456, 729, 874
Kzo9I	GATC	2 cut(s)	288, 469
LmnI	GCTCC	1 cut(s)	776
Lsp1109I	GCAGC	5 cut(s)	139, 178, 379, 428, 505
LweI	GCATC	2 cut(s)	511, 632
MaeI	CTAG	3 cut(s)	27, 752, 840
MaeII	ACGT	1 cut(s)	96
MalI	GATC	2 cut(s)	290, 471
MboI	GATC	2 cut(s)	288, 469
MboII	GAAGA	7 cut(s)	17, 82, 85, 88, 152, 601, 706
MfeI	CAATTG	1 cut(s)	348
MhlI	GDGCHC	3 cut(s)	93, 685, 790
MluCI	AATT	4 cut(s)	30, 348, 552, 795
MlyI	GAGTC	3 cut(s)	141, 325, 650
MmeI	TCCRAC	1 cut(s)	838
MnlI	CCTC	5 cut(s)	415, 650, 784, 803, 873
MroXI	GAANNNNTTC	2 cut(s)	553, 897
MseI	TTAA	3 cut(s)	374, 668, 792
MspA1I	CMGCKG	2 cut(s)	419, 688
MspI	CCGG	1 cut(s)	411
MspR9I	CCNGG	2 cut(s)	412, 779
MunI	CAATTG	1 cut(s)	348
Mva1269I	GAATGC	1 cut(s)	821
MvaI	CCWGG	1 cut(s)	779
MwoI	GCNNNNNNNGC	3 cut(s)	416, 422, 707
NciI	CCSGG	1 cut(s)	412
NdeII	GATC	2 cut(s)	288, 469
NlaIII	CATG	3 cut(s)	456, 729, 874
NlaIV	GGNNCC	2 cut(s)	772, 814
NspI	RCATGY	2 cut(s)	456, 729
PagI	TCATGA	1 cut(s)	870
PctI	GAATGC	1 cut(s)	821
PdmI	GAANNNNTTC	2 cut(s)	553, 897
PfeI	GAWTC	1 cut(s)	874
PkrI	GCNGC	5 cut(s)	154, 193, 394, 418, 495
PleI	GAGTC	3 cut(s)	141, 325, 650
PpsI	GAGTC	3 cut(s)	141, 325, 650
PpuMI	RGGWCCY	1 cut(s)	812
Psp5II	RGGWCCY	1 cut(s)	812
Psp6I	CCWGG	1 cut(s)	777
PspFI	CCCAGC	1 cut(s)	688
PspGI	CCWGG	1 cut(s)	777
PspN4I	GGNNCC	2 cut(s)	772, 814
PspPI	GGNCC	3 cut(s)	578, 812, 860
PspPPI	RGGWCCY	1 cut(s)	812
PsrI	GAACNNNNNNTAC	2 cut(s)	732, 764
PvuII	CAGCTG	2 cut(s)	419, 688
RsaI	GTAC	3 cut(s)	99, 295, 735
RsaNI	GTAC	3 cut(s)	98, 294, 734
SaqAI	TTAA	3 cut(s)	374, 668, 792
SatI	GCNGC	5 cut(s)	153, 192, 393, 417, 494
Sau3AI	GATC	2 cut(s)	288, 469
Sau96I	GGNCC	3 cut(s)	578, 812, 860
SchI	GAGTC	3 cut(s)	141, 325, 650
ScrFI	CCNGG	2 cut(s)	412, 779
SduI	GDGCHC	3 cut(s)	93, 685, 790
SetI	ASST	7 cut(s)	50, 99, 394, 421, 468, 690, 865
SfaNI	GCATC	2 cut(s)	511, 632
SinI	GGWCC	3 cut(s)	578, 812, 860
Sse9I	AATT	4 cut(s)	30, 348, 552, 795
SsiI	CCGC	3 cut(s)	144, 399, 461
SspMI	CTAG	3 cut(s)	27, 752, 840
StyD4I	CCNGG	2 cut(s)	410, 777
TaaI	ACNGT	2 cut(s)	102, 846
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	327
TasI	AATT	4 cut(s)	30, 348, 552, 795
TfiI	GAWTC	1 cut(s)	874
Tru1I	TTAA	3 cut(s)	374, 668, 792
Tru9I	TTAA	3 cut(s)	374, 668, 792
TseI	GCWGC	5 cut(s)	152, 191, 392, 416, 493
TspDTI	ATGAA	2 cut(s)	40, 906
TspGWI	ACGGA	1 cut(s)	281
VpaK11BI	GGWCC	3 cut(s)	578, 812, 860
XapI	RAATTY	2 cut(s)	552, 795
XbaI	TCTAGA	1 cut(s)	839
XceI	RCATGY	2 cut(s)	456, 729
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XmnI	GAANNNNTTC	2 cut(s)	553, 897
XspI	CTAG	3 cut(s)	27, 752, 840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.