Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004537

Physical Location & Seq

Genomic Coordinates Reverse (-)

1559332 .. 1561755

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00001110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGAGCTTCATCATAGACCAGAAGAAGACCAAGCCAGAGTACGACGTGCCGTTTGTTGAGCGTTGGCCGTCGCTAAAGCCCTTCGTCAATGGCGGACTGGCTGCGTTTCTTCAAGGCTTGACCCTTTATGTTCCTTTCGCTGCCATCTACTACTCCCCATTGTTATCTCCCATTCGCCGAAGTCCCAGATTTCTGGGCTTCAACATTCTTGCCAAGTCGTGTCCTGATGGGATTGTGATCCGTACTTTATCTACAAGCCTTCAACTTGGATTATTCGAGACTCTAAGAAACAAAGCAATTGCTAGCAATGATGGAATGGCATTAACTCTTTATCAGGAAGCTGCTTGCGGGTTGATTGCCGGGGCAGCTGAGGCATACTTCAGTTTTCCATTTGTTTCTGCATGTCTCCCTCAGGTTGATCCTACTACTTTATCAGTAGTGCAGCGTGCCAAATACAGAAACATATTTGATGCTCTCTACTCTGTGAGTGCCAATAAAAAAATTTCAGCACTATGGACAAATGCTCGTCCTTATGTGAAGACAAGAATGGGGACTAATGTGGGTATGCTCGCATCATATAATCCAAGCCTCTGTTATCTCAGGGACTCATGTGGTTTAAGTGAAACAAGAGCACAGCTGGGTGCAAGCGCGGTTTCAGCGTTCTTCGGTGCAGCATGCTCTGTACCAGTAAAAAATGTTCTAGCACAAGGGGAAAGTGGCTCCTCCCTGGATTGTGCCCTTAAAATTCTAAAATCAAGAGGACCCCTTGCATTCTTTTCAGGATTTTCTAGACAGTTTGCACTTGTTGGACCTCCTATCATGATTCTGTGGTTTGCTTATGAAAATGTTCGGAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

286

Amino Acids

31.18

Weight (kDa)

9.53

Isoelectric Point (pI)

51.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45510 FvH4_3g45510
malus_domestica	MD07G1230400.v1.1 MD11G1003900.v1.1
pyrus_communis	pycom07g20790 pycom11g00390
rosa_chinensis	RchiOBHm_Chr5g0083431 RchiOBHm_Chr5g0083561 RchiOBHm_Chr5g0083641
rosa_laevigata	RLG00000037032
rosa_multiflora	Rmu_sc0001444.1_g000005 Rmu_sc0001444.1_g000011 Rmu_sc0002245.1_g000025 Rmu_sc0002245.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001110
rosa_rugosa	Rorug05G0484600 Rorug05G0484700
rosa_samantha	Rh5AG534000 Rh5AG535700 Rh5AG536600 Rh5AG537100 Rh5AG537900 Rh5BG562000 Rh5BG562300 Rh5BG562700 Rh5CG584400 Rh5CG584700 Rh5CG584900
rosa_wichuraiana	Rw5G049880 Rw5G050470 Rw5G050480 Rw5G050550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	650
AciI	CCGC	3 cut(s)	93, 348, 650
AclWI	GGATC	2 cut(s)	232, 413
AcoI	YGGCCR	1 cut(s)	65
AcsI	RAATTY	2 cut(s)	501, 744
AcuI	CTGAAG	1 cut(s)	364
AfaI	GTAC	3 cut(s)	41, 244, 684
AgsI	TTSAA	3 cut(s)	113, 202, 263
AjiI	CACGTC	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	726
AluBI	AGCT	4 cut(s)	6, 341, 368, 637
AluI	AGCT	4 cut(s)	6, 341, 368, 637
Alw21I	GWGCWC	1 cut(s)	634
Alw26I	GTCTC	2 cut(s)	272, 410
AlwI	GGATC	2 cut(s)	232, 413
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	6 cut(s)	101, 140, 341, 365, 442, 671
ApoI	RAATTY	2 cut(s)	501, 744
ArsI	GACNNNNNNTTYG	2 cut(s)	35, 67
Asp700I	GAANNNNTTC	1 cut(s)	846
AspLEI	GCGC	1 cut(s)	650
AspS9I	GGNCC	2 cut(s)	761, 809
AsuC2I	CCSGG	1 cut(s)	361
AsuNHI	GCTAGC	1 cut(s)	302
AvaII	GGWCC	2 cut(s)	761, 809
AxyI	CCTNAGG	1 cut(s)	411
BaeGI	GKGCMC	1 cut(s)	739
BbsI	GAAGAC	2 cut(s)	32, 545
Bbv12I	GWGCWC	1 cut(s)	634
BbvCI	CCTCAGC	1 cut(s)	369
BbvI	GCAGC	6 cut(s)	88, 127, 328, 377, 454, 683
BccI	CCATC	3 cut(s)	152, 221, 305
BceAI	ACGGC	2 cut(s)	34, 52
BciT130I	CCWGG	1 cut(s)	728
BcnI	CCSGG	1 cut(s)	361
BcoDI	GTCTC	2 cut(s)	272, 410
BfaI	CTAG	3 cut(s)	303, 701, 789
BisI	GCNGC	6 cut(s)	102, 141, 342, 366, 443, 672
BlsI	GCNGC	6 cut(s)	103, 142, 343, 367, 444, 673
Bme1390I	CCNGG	2 cut(s)	361, 728
Bme18I	GGWCC	2 cut(s)	761, 809
BmgBI	CACGTC	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	761, 809
BmiI	GGNNCC	2 cut(s)	721, 763
BmrFI	CCNGG	2 cut(s)	361, 728
BmsI	GCATC	2 cut(s)	460, 581
BmtI	GCTAGC	1 cut(s)	306
BpiI	GAAGAC	2 cut(s)	32, 545
Bpu10I	CCTNAGC	1 cut(s)	369
BpuMI	CCSGG	1 cut(s)	361
BsaBI	GATNNNNATC	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	360, 726
Bse1I	ACTGG	2 cut(s)	102, 686
Bse21I	CCTNAGG	1 cut(s)	411
Bse3DI	GCAATG	1 cut(s)	313
Bse8I	GATNNNNATC	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	728
BseDI	CCNNGG	2 cut(s)	360, 726
BseJI	GATNNNNATC	1 cut(s)	236
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	3 cut(s)	360, 425, 613
BseNI	ACTGG	2 cut(s)	102, 686
BseRI	GAGGAG	1 cut(s)	712
BseSI	GKGCMC	1 cut(s)	739
BseXI	GCAGC	6 cut(s)	88, 127, 328, 377, 454, 683
BseYI	CCCAGC	1 cut(s)	637
BsgI	GTGCAG	2 cut(s)	461, 690
Bsh1236I	CGCG	1 cut(s)	650
BshFI	GGCC	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	634
BsiSI	CCGG	1 cut(s)	360
BslFI	GGGAC	3 cut(s)	168, 565, 617
BsmAI	GTCTC	2 cut(s)	272, 410
BsmFI	GGGAC	3 cut(s)	168, 565, 617
BsmI	GAATGC	1 cut(s)	770
BsnI	GGCC	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	634, 739
Bsp143I	GATC	2 cut(s)	237, 418
BspACI	CCGC	3 cut(s)	93, 348, 650
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	3 cut(s)	361, 424, 612
BspFNI	CGCG	1 cut(s)	650
BspHI	TCATGA	1 cut(s)	819
BspLI	GGNNCC	2 cut(s)	721, 763
BspOI	GCTAGC	1 cut(s)	306
BspPI	GGATC	2 cut(s)	232, 413
BsrDI	GCAATG	1 cut(s)	313
BsrI	ACTGG	2 cut(s)	102, 686
BssECI	CCNNGG	2 cut(s)	360, 726
BssMI	GATC	2 cut(s)	237, 418
Bst2UI	CCWGG	1 cut(s)	728
Bst4CI	ACNGT	1 cut(s)	795
BstC8I	GCNNGC	6 cut(s)	304, 346, 447, 570, 646, 676
BstDEI	CTNAG	4 cut(s)	284, 369, 411, 599
BstFNI	CGCG	1 cut(s)	650
BstHHI	GCGC	1 cut(s)	650
BstKTI	GATC	2 cut(s)	240, 421
BstMAI	GTCTC	2 cut(s)	272, 410
BstMBI	GATC	2 cut(s)	237, 418
BstMWI	GCNNNNNNNGC	3 cut(s)	365, 371, 656
BstNI	CCWGG	1 cut(s)	728
BstNSI	RCATGY	2 cut(s)	405, 678
BstSCI	CCNGG	2 cut(s)	359, 726
BstSLI	GKGCMC	1 cut(s)	739
BstUI	CGCG	1 cut(s)	650
BstV1I	GCAGC	6 cut(s)	88, 127, 328, 377, 454, 683
BstV2I	GAAGAC	2 cut(s)	32, 545
BstXI	CCANNNNNNTGG	1 cut(s)	193
Bsu36I	CCTNAGG	1 cut(s)	411
BsuRI	GGCC	1 cut(s)	67
BtrI	CACGTC	1 cut(s)	46
Cac8I	GCNNGC	6 cut(s)	304, 346, 447, 570, 646, 676
CciI	TCATGA	1 cut(s)	819
CfoI	GCGC	1 cut(s)	650
Cfr13I	GGNCC	2 cut(s)	761, 809
Csp6I	GTAC	3 cut(s)	40, 243, 683
CviAII	CATG	4 cut(s)	402, 609, 675, 820
CviQI	GTAC	3 cut(s)	40, 243, 683
DdeI	CTNAG	4 cut(s)	284, 369, 411, 599
DpnI	GATC	2 cut(s)	239, 420
DpnII	GATC	2 cut(s)	237, 418
EaeI	YGGCCR	1 cut(s)	65
EciI	GGCGGA	1 cut(s)	108
Eco47I	GGWCC	2 cut(s)	761, 809
Eco57I	CTGAAG	1 cut(s)	364
Eco81I	CCTNAGG	1 cut(s)	411
EcoO109I	RGGNCCY	1 cut(s)	761
EcoRII	CCWGG	1 cut(s)	726
FaeI	CATG	4 cut(s)	405, 612, 678, 823
FaqI	GGGAC	3 cut(s)	168, 565, 617
FatI	CATG	4 cut(s)	401, 608, 674, 819
FauI	CCCGC	1 cut(s)	341
Fnu4HI	GCNGC	6 cut(s)	102, 141, 342, 366, 443, 672
Fsp4HI	GCNGC	6 cut(s)	102, 141, 342, 366, 443, 672
FspBI	CTAG	3 cut(s)	303, 701, 789
GlaI	GCGC	1 cut(s)	649
GluI	GCNGC	6 cut(s)	102, 141, 342, 366, 443, 672
GsaI	CCCAGC	1 cut(s)	641
HaeIII	GGCC	1 cut(s)	67
HapII	CCGG	1 cut(s)	360
HhaI	GCGC	1 cut(s)	650
Hin1II	CATG	4 cut(s)	405, 612, 678, 823
Hin6I	GCGC	1 cut(s)	648
HinP1I	GCGC	1 cut(s)	648
HinfI	GANTC	3 cut(s)	280, 605, 823
HpaII	CCGG	1 cut(s)	360
Hpy188I	TCNGA	1 cut(s)	852
Hpy188III	TCNNGA	7 cut(s)	224, 277, 335, 756, 780, 789, 820
Hpy99I	CGWCG	2 cut(s)	47, 73
HpyAV	CCTTC	2 cut(s)	91, 269
HpyCH4III	ACNGT	1 cut(s)	795
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	6 cut(s)	401, 442, 644, 671, 770, 800
HpyF10VI	GCNNNNNNNGC	3 cut(s)	365, 371, 656
HpyF3I	CTNAG	4 cut(s)	284, 369, 411, 599
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	4 cut(s)	405, 612, 678, 823
HspAI	GCGC	1 cut(s)	648
Kzo9I	GATC	2 cut(s)	237, 418
LmnI	GCTCC	1 cut(s)	725
Lsp1109I	GCAGC	6 cut(s)	88, 127, 328, 377, 454, 683
LweI	GCATC	2 cut(s)	460, 581
MaeI	CTAG	3 cut(s)	303, 701, 789
MaeII	ACGT	1 cut(s)	45
MalI	GATC	2 cut(s)	239, 420
MboI	GATC	2 cut(s)	237, 418
MboII	GAAGA	5 cut(s)	34, 37, 101, 550, 655
MfeI	CAATTG	1 cut(s)	297
MhlI	GDGCHC	2 cut(s)	634, 739
MluCI	AATT	3 cut(s)	297, 501, 744
MlyI	GAGTC	2 cut(s)	274, 599
MmeI	TCCRAC	1 cut(s)	787
MnlI	CCTC	6 cut(s)	364, 420, 599, 733, 752, 822
MroXI	GAANNNNTTC	1 cut(s)	846
MseI	TTAA	3 cut(s)	323, 617, 741
MspA1I	CMGCKG	2 cut(s)	368, 637
MspI	CCGG	1 cut(s)	360
MspR9I	CCNGG	2 cut(s)	361, 728
MunI	CAATTG	1 cut(s)	297
Mva1269I	GAATGC	1 cut(s)	770
MvaI	CCWGG	1 cut(s)	728
MvnI	CGCG	1 cut(s)	650
MwoI	GCNNNNNNNGC	3 cut(s)	365, 371, 656
NciI	CCSGG	1 cut(s)	361
NdeII	GATC	2 cut(s)	237, 418
NheI	GCTAGC	1 cut(s)	302
NlaIII	CATG	4 cut(s)	405, 612, 678, 823
NlaIV	GGNNCC	2 cut(s)	721, 763
NspI	RCATGY	2 cut(s)	405, 678
PaeI	GCATGC	1 cut(s)	678
PagI	TCATGA	1 cut(s)	819
PctI	GAATGC	1 cut(s)	770
PdmI	GAANNNNTTC	1 cut(s)	846
PfeI	GAWTC	1 cut(s)	823
PkrI	GCNGC	6 cut(s)	103, 142, 343, 367, 444, 673
PleI	GAGTC	2 cut(s)	274, 599
PpsI	GAGTC	2 cut(s)	274, 599
PpuMI	RGGWCCY	1 cut(s)	761
Psp5II	RGGWCCY	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	726
PspFI	CCCAGC	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	726
PspN4I	GGNNCC	2 cut(s)	721, 763
PspPI	GGNCC	2 cut(s)	761, 809
PspPPI	RGGWCCY	1 cut(s)	761
PsrI	GAACNNNNNNTAC	2 cut(s)	681, 713
PvuII	CAGCTG	2 cut(s)	368, 637
RsaI	GTAC	3 cut(s)	41, 244, 684
RsaNI	GTAC	3 cut(s)	40, 243, 683
SaqAI	TTAA	3 cut(s)	323, 617, 741
SatI	GCNGC	6 cut(s)	102, 141, 342, 366, 443, 672
Sau3AI	GATC	2 cut(s)	237, 418
Sau96I	GGNCC	2 cut(s)	761, 809
SchI	GAGTC	2 cut(s)	274, 599
ScrFI	CCNGG	2 cut(s)	361, 728
SduI	GDGCHC	2 cut(s)	634, 739
SetI	ASST	7 cut(s)	8, 48, 343, 370, 417, 639, 814
SfaNI	GCATC	2 cut(s)	460, 581
SinI	GGWCC	2 cut(s)	761, 809
SphI	GCATGC	1 cut(s)	678
Sse9I	AATT	3 cut(s)	297, 501, 744
SsiI	CCGC	3 cut(s)	93, 348, 650
SspMI	CTAG	3 cut(s)	303, 701, 789
StyD4I	CCNGG	2 cut(s)	359, 726
TaaI	ACNGT	1 cut(s)	795
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	1 cut(s)	276
TasI	AATT	3 cut(s)	297, 501, 744
TfiI	GAWTC	1 cut(s)	823
Tru1I	TTAA	3 cut(s)	323, 617, 741
Tru9I	TTAA	3 cut(s)	323, 617, 741
TseI	GCWGC	6 cut(s)	101, 140, 341, 365, 442, 671
TspDTI	ATGAA	1 cut(s)	855
TspGWI	ACGGA	1 cut(s)	230
VpaK11BI	GGWCC	2 cut(s)	761, 809
XapI	RAATTY	2 cut(s)	501, 744
XbaI	TCTAGA	1 cut(s)	788
XceI	RCATGY	2 cut(s)	405, 678
XmnI	GAANNNNTTC	1 cut(s)	846
XspI	CTAG	3 cut(s)	303, 701, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.