Rorug05G0484600

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004537
Physical Location & Seq
Reverse (-)
66788177 .. 66788602
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0484600.1

Sequence Viewer

Length: 396 bp
ATGTCGCTCATCCCCAACTTCCGACGAAGCAATGACCCTTTCAAGGACTTCCAATTCCCTACTTCATCGCTCTCTACTTTCCCTGAATTTCCTCATGAAAATTCGGCTTTTGTTAACACCAGGATCGACTGGAAGGAGACCCTGGAAGCCCATGTATTGAAGACTGACATTATGGGGCTGAAGAAAGAAGAGATCAAGGTTGAGGTCGAAGATGACAGGGTGCTTCATATTAGCAGAGAGAGGAAGATAGAGAAGGAGGACAAAAACGAGACATGGCACCGGGTCGAGCGTAGTAGCGGCAAGTTCTCCAAAAGGTTCAGTCTTCCTGAGAACGCGAAGATAGACAAGATAAAGGCTACTATGGAGAATGGAGGTTCTCAGCGTGACGGTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

131

Amino Acids

15.33

Weight (kDa)

6.93

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 43 - 124 1e-20 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 276
AccII CGCG 1 cut(s) 335
AciI CCGC 1 cut(s) 297
AclWI GGATC 1 cut(s) 131
AcsI RAATTY 2 cut(s) 86, 100
AcuI CTGAAG 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 2 cut(s) 43, 160
AjnI CCWGG 2 cut(s) 119, 141
Alw26I GTCTC 2 cut(s) 131, 263
AlwI GGATC 1 cut(s) 131
ApoI RAATTY 2 cut(s) 86, 100
AsuC2I CCSGG 1 cut(s) 281
BanI GGYRCC 1 cut(s) 276
BbsI GAAGAC 2 cut(s) 167, 314
BciT130I CCWGG 2 cut(s) 121, 143
BcnI CCSGG 1 cut(s) 281
BcoDI GTCTC 2 cut(s) 131, 263
BisI GCNGC 1 cut(s) 298
BlsI GCNGC 1 cut(s) 299
Bme1390I CCNGG 3 cut(s) 121, 143, 281
BmiI GGNNCC 2 cut(s) 278, 391
BmrFI CCNGG 3 cut(s) 121, 143, 281
BpiI GAAGAC 2 cut(s) 167, 314
BpuMI CCSGG 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 134
Bse3DI GCAATG 1 cut(s) 37
BseBI CCWGG 2 cut(s) 121, 143
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 37
BseMII CTCAG 2 cut(s) 318, 392
BseNI ACTGG 1 cut(s) 134
Bsh1236I CGCG 1 cut(s) 335
BshNI GGYRCC 1 cut(s) 276
BsiSI CCGG 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 2 cut(s) 131, 263
Bso31I GGTCTC 1 cut(s) 131
Bsp143I GATC 2 cut(s) 123, 192
BspACI CCGC 1 cut(s) 297
BspCNI CTCAG 2 cut(s) 319, 391
BspFNI CGCG 1 cut(s) 335
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 278, 391
BspPI GGATC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 276
BspTNI GGTCTC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 37
BsrI ACTGG 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 2 cut(s) 123, 192
Bst2UI CCWGG 2 cut(s) 121, 143
Bst4CI ACNGT 1 cut(s) 389
Bst6I CTCTTC 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 327, 378
BstF5I GGATG 1 cut(s) 9
BstFNI CGCG 1 cut(s) 335
BstKTI GATC 2 cut(s) 126, 195
BstMAI GTCTC 2 cut(s) 131, 263
BstMBI GATC 2 cut(s) 123, 192
BstNI CCWGG 2 cut(s) 121, 143
BstSCI CCNGG 3 cut(s) 119, 141, 279
BstUI CGCG 1 cut(s) 335
BstV2I GAAGAC 2 cut(s) 167, 314
BtgZI GCGATG 1 cut(s) 51
BtsCI GGATG 1 cut(s) 9
CciI TCATGA 1 cut(s) 94
CviAII CATG 3 cut(s) 95, 152, 273
CviJI RGCY 4 cut(s) 107, 149, 178, 356
CviKI_1 RGCY 4 cut(s) 107, 149, 178, 356
DdeI CTNAG 2 cut(s) 327, 378
DpnI GATC 2 cut(s) 125, 194
DpnII GATC 2 cut(s) 123, 192
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 200
EcoRII CCWGG 2 cut(s) 119, 141
FaeI CATG 3 cut(s) 98, 155, 276
FaiI YATR 6 cut(s) 96, 153, 173, 228, 274, 362
FatI CATG 3 cut(s) 94, 151, 272
Fnu4HI GCNGC 1 cut(s) 298
Fsp4HI GCNGC 1 cut(s) 298
GluI GCNGC 1 cut(s) 298
HapII CCGG 1 cut(s) 280
Hin1II CATG 3 cut(s) 98, 155, 276
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HpaI GTTAAC 1 cut(s) 115
HpaII CCGG 1 cut(s) 280
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 23
Hpy188III TCNNGA 2 cut(s) 95, 326
Hpy8I GTNNAC 1 cut(s) 115
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 2 cut(s) 127, 247
HpyCH4III ACNGT 1 cut(s) 389
HpyF3I CTNAG 2 cut(s) 327, 378
Hsp92II CATG 3 cut(s) 98, 155, 276
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 2 cut(s) 123, 192
LpnPI CCDG 9 cut(s) 96, 106, 115, 128, 133, 155, 202, 293, 339
MaeIII GTNAC 1 cut(s) 383
MalI GATC 2 cut(s) 125, 194
MboI GATC 2 cut(s) 123, 192
MboII GAAGA 7 cut(s) 172, 193, 200, 221, 256, 314, 349
MluCI AATT 3 cut(s) 53, 86, 100
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 5 cut(s) 102, 196, 234, 250, 365
MseI TTAA 1 cut(s) 114
MspI CCGG 1 cut(s) 280
MspR9I CCNGG 3 cut(s) 121, 143, 281
MvaI CCWGG 2 cut(s) 121, 143
MvnI CGCG 1 cut(s) 335
NciI CCSGG 1 cut(s) 281
NdeII GATC 2 cut(s) 123, 192
NlaIII CATG 3 cut(s) 98, 155, 276
NlaIV GGNNCC 2 cut(s) 278, 391
NmuCI GTSAC 1 cut(s) 383
PagI TCATGA 1 cut(s) 94
PkrI GCNGC 1 cut(s) 299
Psp6I CCWGG 2 cut(s) 119, 141
PspGI CCWGG 2 cut(s) 119, 141
PspN4I GGNNCC 2 cut(s) 278, 391
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 1 cut(s) 298
Sau3AI GATC 2 cut(s) 123, 192
ScrFI CCNGG 3 cut(s) 121, 143, 281
SetI ASST 4 cut(s) 201, 207, 317, 376
Sse9I AATT 3 cut(s) 53, 86, 100
SsiI CCGC 1 cut(s) 297
StyD4I CCNGG 3 cut(s) 119, 141, 279
TaaI ACNGT 1 cut(s) 389
TaqI TCGA 3 cut(s) 126, 207, 285
TasI AATT 3 cut(s) 53, 86, 100
TauI GCSGC 1 cut(s) 300
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TseFI GTSAC 1 cut(s) 383
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 3 cut(s) 54, 111, 215
XapI RAATTY 2 cut(s) 86, 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.