Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0004537

Physical Location & Seq

Genomic Coordinates Forward (+)

82819591 .. 82822289

Gene Structure 2699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG584400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGAAGAGAAGCAGAGAGTAGCCACTGGAATTGCAAATGATATGAGCTTCATCATAGACCAGAACAAGAAGACCAAGCCGGACTACGACGTGCCGTTCATTGAGCGTTGGCCGTCGCTAAAGCCCTTTGTGAATGGCGGACTCGCTGCGTTTCTTCAAGGCTTGACCCTTTATATTCCTTTCGCTGCCATTTACTACTCCCCATTGTTATCTCCCATTCGCCGAAGTCCAAGATTTCTGGGCTTCAACATTCTTGCCAAGTCGTGTCCTGATGGGATTGTGATCCGTACTTTATCTACAAGCCTTCAACTTGGATTATTCGAGACTCTAAGAAACAAAGCAATTGCTACCAATGATGGAATGGCATTAACTCTTTATCAGGAAGCTGCTTGCGGGTTGATTGCCGGGGCAGCTGAGGCATACTTCAGTTTTCCATTTGTTTCTGCATGTCTCCCGCAGGTTGATCCTACGACTTTATCAGTAGTGCAGTGTGCCAAATACAGAAGCATGTTTGATGCTATCTACTGTCTGAGTGCCAATAAAAAAATTTCAGCACTATGGACAAATGCTGGTCCTTATGTTAAGACAAGAATGGGGACTAATGTGGGTATGCTCGCATCATATAATCCAAGCCTCTGTTATCTCAGGGACTCATGTGGTTTAAGCGAAGCAAGAGCACAGCTGGGTGCAAGTGTGGTTTCAGCGTTCTTCGGTGCAGCATGCTCTGTACCATTAAAAAATGTTCTAGCACAAGGGGAAAGTGGCTCCTCCCTGGATTGTGCCCTTAAAATTCTAAAATCAAGAGGACCCCTTGCATTCGTTTCAGGATTTTCTAGACAGTTTACACTTGTTGGACCTCCTATCATGATTCTGTGGTTTGCTTATGAAAATGTTCGGAAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

301

Amino Acids

32.73

Weight (kDa)

9.18

Isoelectric Point (pI)

49.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45510 FvH4_3g45510
malus_domestica	MD07G1230400.v1.1 MD11G1003900.v1.1
pyrus_communis	pycom07g20790 pycom11g00390
rosa_chinensis	RchiOBHm_Chr5g0083431 RchiOBHm_Chr5g0083561 RchiOBHm_Chr5g0083641
rosa_laevigata	RLG00000037032
rosa_multiflora	Rmu_sc0001444.1_g000005 Rmu_sc0001444.1_g000011 Rmu_sc0002245.1_g000025 Rmu_sc0002245.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001110
rosa_rugosa	Rorug05G0484600 Rorug05G0484700
rosa_samantha	Rh5AG534000 Rh5AG535700 Rh5AG536600 Rh5AG537100 Rh5AG537900 Rh5BG562000 Rh5BG562300 Rh5BG562700 Rh5CG584400 Rh5CG584700 Rh5CG584900
rosa_wichuraiana	Rw5G049880 Rw5G050470 Rw5G050480 Rw5G050550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	448
AciI	CCGC	3 cut(s)	138, 393, 455
AclWI	GGATC	2 cut(s)	277, 458
AcoI	YGGCCR	1 cut(s)	110
AcsI	RAATTY	2 cut(s)	546, 789
AcuI	CTGAAG	1 cut(s)	409
AfaI	GTAC	2 cut(s)	289, 729
AgsI	TTSAA	3 cut(s)	158, 247, 308
AjiI	CACGTC	1 cut(s)	91
AjnI	CCWGG	1 cut(s)	771
AluBI	AGCT	4 cut(s)	48, 386, 413, 682
AluI	AGCT	4 cut(s)	48, 386, 413, 682
Alw21I	GWGCWC	1 cut(s)	679
Alw26I	GTCTC	2 cut(s)	317, 455
AlwI	GGATC	2 cut(s)	277, 458
AoxI	GGCC	1 cut(s)	110
ApeKI	GCWGC	5 cut(s)	146, 185, 386, 410, 716
ApoI	RAATTY	2 cut(s)	546, 789
Asp700I	GAANNNNTTC	1 cut(s)	891
AspS9I	GGNCC	3 cut(s)	572, 806, 854
AsuC2I	CCSGG	1 cut(s)	406
AvaII	GGWCC	3 cut(s)	572, 806, 854
BaeGI	GKGCMC	1 cut(s)	784
BbsI	GAAGAC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	679
BbvCI	CCTCAGC	1 cut(s)	414
BbvI	GCAGC	5 cut(s)	133, 172, 373, 422, 728
BccI	CCATC	2 cut(s)	266, 350
BceAI	ACGGC	2 cut(s)	79, 97
BciT130I	CCWGG	1 cut(s)	773
BcnI	CCSGG	1 cut(s)	406
BcoDI	GTCTC	2 cut(s)	317, 455
BfaI	CTAG	2 cut(s)	746, 834
BfuAI	ACCTGC	1 cut(s)	448
BisI	GCNGC	5 cut(s)	147, 186, 387, 411, 717
BlsI	GCNGC	5 cut(s)	148, 187, 388, 412, 718
Bme1390I	CCNGG	2 cut(s)	406, 773
Bme18I	GGWCC	3 cut(s)	572, 806, 854
BmgBI	CACGTC	1 cut(s)	91
BmgT120I	GGNCC	3 cut(s)	572, 806, 854
BmiI	GGNNCC	2 cut(s)	766, 808
BmrFI	CCNGG	2 cut(s)	406, 773
BmsI	GCATC	2 cut(s)	505, 626
BpiI	GAAGAC	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	414
BpuMI	CCSGG	1 cut(s)	406
BsaBI	GATNNNNATC	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	405, 771
Bse1I	ACTGG	1 cut(s)	31
Bse8I	GATNNNNATC	1 cut(s)	281
BseBI	CCWGG	1 cut(s)	773
BseDI	CCNNGG	2 cut(s)	405, 771
BseJI	GATNNNNATC	1 cut(s)	281
BseMII	CTCAG	3 cut(s)	405, 521, 658
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	757
BseSI	GKGCMC	1 cut(s)	784
BseXI	GCAGC	5 cut(s)	133, 172, 373, 422, 728
BseYI	CCCAGC	1 cut(s)	682
BsgI	GTGCAG	2 cut(s)	506, 735
BshFI	GGCC	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	679
BsiSI	CCGG	2 cut(s)	80, 405
BslFI	GGGAC	2 cut(s)	610, 662
BsmAI	GTCTC	2 cut(s)	317, 455
BsmFI	GGGAC	2 cut(s)	610, 662
BsmI	GAATGC	1 cut(s)	815
BsnI	GGCC	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	679, 784
Bsp143I	GATC	2 cut(s)	282, 463
BspACI	CCGC	3 cut(s)	138, 393, 455
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	3 cut(s)	406, 522, 657
BspHI	TCATGA	1 cut(s)	864
BspLI	GGNNCC	2 cut(s)	766, 808
BspMI	ACCTGC	1 cut(s)	448
BspPI	GGATC	2 cut(s)	277, 458
BsrI	ACTGG	1 cut(s)	31
BssECI	CCNNGG	2 cut(s)	405, 771
BssMI	GATC	2 cut(s)	282, 463
Bst2UI	CCWGG	1 cut(s)	773
Bst4CI	ACNGT	2 cut(s)	527, 840
BstC8I	GCNNGC	3 cut(s)	391, 615, 721
BstDEI	CTNAG	4 cut(s)	329, 414, 530, 644
BstKTI	GATC	2 cut(s)	285, 466
BstMAI	GTCTC	2 cut(s)	317, 455
BstMBI	GATC	2 cut(s)	282, 463
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 416
BstNI	CCWGG	1 cut(s)	773
BstNSI	RCATGY	3 cut(s)	450, 511, 723
BstSCI	CCNGG	2 cut(s)	404, 771
BstSLI	GKGCMC	1 cut(s)	784
BstV1I	GCAGC	5 cut(s)	133, 172, 373, 422, 728
BstV2I	GAAGAC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	112
BtrI	CACGTC	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	494
BtsIMutI	CAGTG	2 cut(s)	24, 494
BveI	ACCTGC	1 cut(s)	448
Cac8I	GCNNGC	3 cut(s)	391, 615, 721
CciI	TCATGA	1 cut(s)	864
Cfr13I	GGNCC	3 cut(s)	572, 806, 854
Csp6I	GTAC	2 cut(s)	288, 728
CspCI	CAANNNNNGTGG	2 cut(s)	13, 48
CviAII	CATG	5 cut(s)	447, 508, 654, 720, 865
CviQI	GTAC	2 cut(s)	288, 728
DdeI	CTNAG	4 cut(s)	329, 414, 530, 644
DpnI	GATC	2 cut(s)	284, 465
DpnII	GATC	2 cut(s)	282, 463
EaeI	YGGCCR	1 cut(s)	110
EciI	GGCGGA	1 cut(s)	153
Eco47I	GGWCC	3 cut(s)	572, 806, 854
Eco57I	CTGAAG	1 cut(s)	409
EcoO109I	RGGNCCY	1 cut(s)	806
EcoRII	CCWGG	1 cut(s)	771
FaeI	CATG	5 cut(s)	450, 511, 657, 723, 868
FaqI	GGGAC	2 cut(s)	610, 662
FatI	CATG	5 cut(s)	446, 507, 653, 719, 864
FauI	CCCGC	2 cut(s)	386, 462
Fnu4HI	GCNGC	5 cut(s)	147, 186, 387, 411, 717
Fsp4HI	GCNGC	5 cut(s)	147, 186, 387, 411, 717
FspBI	CTAG	2 cut(s)	746, 834
GluI	GCNGC	5 cut(s)	147, 186, 387, 411, 717
GsaI	CCCAGC	1 cut(s)	686
HaeIII	GGCC	1 cut(s)	112
HapII	CCGG	2 cut(s)	80, 405
Hin1II	CATG	5 cut(s)	450, 511, 657, 723, 868
HinfI	GANTC	4 cut(s)	141, 325, 650, 868
HpaII	CCGG	2 cut(s)	80, 405
Hpy166II	GTNNAC	1 cut(s)	843
Hpy188I	TCNGA	2 cut(s)	531, 897
Hpy188III	TCNNGA	7 cut(s)	269, 322, 380, 801, 825, 834, 865
Hpy8I	GTNNAC	1 cut(s)	843
Hpy99I	CGWCG	2 cut(s)	92, 118
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	2 cut(s)	527, 840
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	6 cut(s)	35, 446, 487, 689, 716, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 416
HpyF3I	CTNAG	4 cut(s)	329, 414, 530, 644
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	5 cut(s)	450, 511, 657, 723, 868
Kzo9I	GATC	2 cut(s)	282, 463
LmnI	GCTCC	1 cut(s)	770
Lsp1109I	GCAGC	5 cut(s)	133, 172, 373, 422, 728
LweI	GCATC	2 cut(s)	505, 626
MaeI	CTAG	2 cut(s)	746, 834
MaeII	ACGT	1 cut(s)	90
MalI	GATC	2 cut(s)	284, 465
MboI	GATC	2 cut(s)	282, 463
MboII	GAAGA	4 cut(s)	17, 82, 146, 700
MfeI	CAATTG	1 cut(s)	342
MhlI	GDGCHC	2 cut(s)	679, 784
MluCI	AATT	4 cut(s)	30, 342, 546, 789
MlyI	GAGTC	3 cut(s)	135, 319, 644
MmeI	TCCRAC	1 cut(s)	832
MnlI	CCTC	5 cut(s)	409, 644, 778, 797, 867
MroXI	GAANNNNTTC	1 cut(s)	891
MseI	TTAA	5 cut(s)	368, 582, 662, 734, 786
MspA1I	CMGCKG	2 cut(s)	413, 682
MspI	CCGG	2 cut(s)	80, 405
MspR9I	CCNGG	2 cut(s)	406, 773
MunI	CAATTG	1 cut(s)	342
Mva1269I	GAATGC	1 cut(s)	815
MvaI	CCWGG	1 cut(s)	773
MwoI	GCNNNNNNNGC	2 cut(s)	410, 416
NciI	CCSGG	1 cut(s)	406
NdeII	GATC	2 cut(s)	282, 463
NlaIII	CATG	5 cut(s)	450, 511, 657, 723, 868
NlaIV	GGNNCC	2 cut(s)	766, 808
NspI	RCATGY	3 cut(s)	450, 511, 723
PaeI	GCATGC	1 cut(s)	723
PagI	TCATGA	1 cut(s)	864
PctI	GAATGC	1 cut(s)	815
PdmI	GAANNNNTTC	1 cut(s)	891
PfeI	GAWTC	1 cut(s)	868
PkrI	GCNGC	5 cut(s)	148, 187, 388, 412, 718
PleI	GAGTC	3 cut(s)	135, 319, 644
PpsI	GAGTC	3 cut(s)	135, 319, 644
PpuMI	RGGWCCY	1 cut(s)	806
Psp5II	RGGWCCY	1 cut(s)	806
Psp6I	CCWGG	1 cut(s)	771
PspFI	CCCAGC	1 cut(s)	682
PspGI	CCWGG	1 cut(s)	771
PspN4I	GGNNCC	2 cut(s)	766, 808
PspPI	GGNCC	3 cut(s)	572, 806, 854
PspPPI	RGGWCCY	1 cut(s)	806
PvuII	CAGCTG	2 cut(s)	413, 682
RsaI	GTAC	2 cut(s)	289, 729
RsaNI	GTAC	2 cut(s)	288, 728
SaqAI	TTAA	5 cut(s)	368, 582, 662, 734, 786
SatI	GCNGC	5 cut(s)	147, 186, 387, 411, 717
Sau3AI	GATC	2 cut(s)	282, 463
Sau96I	GGNCC	3 cut(s)	572, 806, 854
SchI	GAGTC	3 cut(s)	135, 319, 644
ScrFI	CCNGG	2 cut(s)	406, 773
SduI	GDGCHC	2 cut(s)	679, 784
SetI	ASST	7 cut(s)	50, 93, 388, 415, 462, 684, 859
SfaNI	GCATC	2 cut(s)	505, 626
SinI	GGWCC	3 cut(s)	572, 806, 854
SphI	GCATGC	1 cut(s)	723
Sse9I	AATT	4 cut(s)	30, 342, 546, 789
SsiI	CCGC	3 cut(s)	138, 393, 455
SspMI	CTAG	2 cut(s)	746, 834
StyD4I	CCNGG	2 cut(s)	404, 771
TaaI	ACNGT	2 cut(s)	527, 840
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	321
TasI	AATT	4 cut(s)	30, 342, 546, 789
TfiI	GAWTC	1 cut(s)	868
Tru1I	TTAA	5 cut(s)	368, 582, 662, 734, 786
Tru9I	TTAA	5 cut(s)	368, 582, 662, 734, 786
TscAI	CASTG	2 cut(s)	31, 494
TseI	GCWGC	5 cut(s)	146, 185, 386, 410, 716
TspDTI	ATGAA	3 cut(s)	40, 88, 900
TspGWI	ACGGA	1 cut(s)	275
TspRI	CASTG	2 cut(s)	31, 494
VpaK11BI	GGWCC	3 cut(s)	572, 806, 854
XapI	RAATTY	2 cut(s)	546, 789
XbaI	TCTAGA	1 cut(s)	833
XceI	RCATGY	3 cut(s)	450, 511, 723
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XmnI	GAANNNNTTC	1 cut(s)	891
XspI	CTAG	2 cut(s)	746, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.