Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002245.1

Orthogroup ID

OG0004537

Physical Location & Seq

Genomic Coordinates Reverse (-)

176488 .. 178611

Gene Structure 2124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002245.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgagcttcatcatagaccagaacaagaagaagaagaccaagccagagtacgacgtgccgtttattgagcgttggccgtcgctaaagccctttgtgaatggcggactcgctgcgtttcttcaaggcttgaccctttatgttcctttcgctgccatctactactccccattgttatctcccattcgccgaagtcccagatttctgggcttcaacattcttgccaagtcgtgtcctgatgggattgtgatccgtactttatctacaagccttcaacttggattattcgagactctaagaaacaaagcaattgctaccaatgatgggatggcattaactctttatcaggaagctgcttgcgggttgattgccggggcagctgaggcatacttcagttttccatttgtttctgcatgtctcccgcaggttgatcccacgactttatcagtagtgcagtgtgccaaatacagaaacatatttgatgctttctactctatgagtgccaatagaaaaatttcagcactatggacaaatgctggtccttatgtgaagacaagaatggggactaatgtgggtgcaagtgcggtttcagcgttcttcggtgcagcatgctctgtaccagtaaaaaatgttctagcacaaggggaaagtggctcctccctggattgtgcccttaaaattctaaaatcaagaggaccccttgcattcttttcaggattttctagacagtttgcactcgttggacctcctatcatgattctgtggtttgcttatgaaaatgttcggaaactctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

263

Amino Acids

28.69

Weight (kDa)

9.6

Isoelectric Point (pI)

53.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45510 FvH4_3g45510
malus_domestica	MD07G1230400.v1.1 MD11G1003900.v1.1
pyrus_communis	pycom07g20790 pycom11g00390
rosa_chinensis	RchiOBHm_Chr5g0083431 RchiOBHm_Chr5g0083561 RchiOBHm_Chr5g0083641
rosa_laevigata	RLG00000037032
rosa_multiflora	Rmu_sc0001444.1_g000005 Rmu_sc0001444.1_g000011 Rmu_sc0002245.1_g000025 Rmu_sc0002245.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001110
rosa_rugosa	Rorug05G0484600 Rorug05G0484700
rosa_samantha	Rh5AG534000 Rh5AG535700 Rh5AG536600 Rh5AG537100 Rh5AG537900 Rh5BG562000 Rh5BG562300 Rh5BG562700 Rh5CG584400 Rh5CG584700 Rh5CG584900
rosa_wichuraiana	Rw5G049880 Rw5G050470 Rw5G050480 Rw5G050550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	412
AciI	CCGC	4 cut(s)	102, 357, 419, 581
AclWI	GGATC	2 cut(s)	241, 422
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	2 cut(s)	510, 675
AcuI	CTGAAG	1 cut(s)	373
AfaI	GTAC	3 cut(s)	50, 253, 615
AfiI	CCNNNNNNNGG	1 cut(s)	321
AgsI	TTSAA	3 cut(s)	122, 211, 272
AjiI	CACGTC	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	657
AluBI	AGCT	3 cut(s)	6, 350, 377
AluI	AGCT	3 cut(s)	6, 350, 377
Alw26I	GTCTC	2 cut(s)	281, 419
AlwI	GGATC	2 cut(s)	241, 422
AoxI	GGCC	1 cut(s)	74
ApeKI	GCWGC	5 cut(s)	110, 149, 350, 374, 602
ApoI	RAATTY	2 cut(s)	510, 675
Asp700I	GAANNNNTTC	2 cut(s)	511, 777
AspS9I	GGNCC	3 cut(s)	536, 692, 740
AsuC2I	CCSGG	1 cut(s)	370
AvaII	GGWCC	3 cut(s)	536, 692, 740
BaeGI	GKGCMC	1 cut(s)	670
BbsI	GAAGAC	2 cut(s)	41, 554
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	5 cut(s)	97, 136, 337, 386, 614
BccI	CCATC	4 cut(s)	161, 230, 314, 319
BceAI	ACGGC	2 cut(s)	43, 61
BciT130I	CCWGG	1 cut(s)	659
BcnI	CCSGG	1 cut(s)	370
BcoDI	GTCTC	2 cut(s)	281, 419
BfaI	CTAG	2 cut(s)	632, 720
BfuAI	ACCTGC	1 cut(s)	412
BisI	GCNGC	5 cut(s)	111, 150, 351, 375, 603
BlsI	GCNGC	5 cut(s)	112, 151, 352, 376, 604
Bme1390I	CCNGG	2 cut(s)	370, 659
Bme18I	GGWCC	3 cut(s)	536, 692, 740
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	3 cut(s)	536, 692, 740
BmiI	GGNNCC	2 cut(s)	652, 694
BmrFI	CCNGG	2 cut(s)	370, 659
BmsI	GCATC	1 cut(s)	469
BpiI	GAAGAC	2 cut(s)	41, 554
Bpu10I	CCTNAGC	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	370
BsaBI	GATNNNNATC	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	369, 657
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse1I	ACTGG	1 cut(s)	617
Bse8I	GATNNNNATC	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	659
BseDI	CCNNGG	2 cut(s)	369, 657
BseGI	GGATG	1 cut(s)	330
BseJI	GATNNNNATC	1 cut(s)	245
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	369
BseNI	ACTGG	1 cut(s)	617
BseRI	GAGGAG	1 cut(s)	643
BseSI	GKGCMC	1 cut(s)	670
BseXI	GCAGC	5 cut(s)	97, 136, 337, 386, 614
BsgI	GTGCAG	2 cut(s)	470, 621
BshFI	GGCC	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	369
BslFI	GGGAC	2 cut(s)	177, 574
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	2 cut(s)	281, 419
BsmFI	GGGAC	2 cut(s)	177, 574
BsmI	GAATGC	1 cut(s)	701
BsnI	GGCC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp143I	GATC	2 cut(s)	246, 427
BspACI	CCGC	4 cut(s)	102, 357, 419, 581
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	1 cut(s)	370
BspHI	TCATGA	1 cut(s)	750
BspLI	GGNNCC	2 cut(s)	652, 694
BspMI	ACCTGC	1 cut(s)	412
BspPI	GGATC	2 cut(s)	241, 422
BsrI	ACTGG	1 cut(s)	617
BssECI	CCNNGG	2 cut(s)	369, 657
BssMI	GATC	2 cut(s)	246, 427
Bst2UI	CCWGG	1 cut(s)	659
Bst4CI	ACNGT	1 cut(s)	726
BstC8I	GCNNGC	2 cut(s)	355, 607
BstDEI	CTNAG	2 cut(s)	293, 378
BstF5I	GGATG	1 cut(s)	330
BstKTI	GATC	2 cut(s)	249, 430
BstMAI	GTCTC	2 cut(s)	281, 419
BstMBI	GATC	2 cut(s)	246, 427
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 380, 587
BstNI	CCWGG	1 cut(s)	659
BstNSI	RCATGY	2 cut(s)	414, 609
BstSCI	CCNGG	2 cut(s)	368, 657
BstSLI	GKGCMC	1 cut(s)	670
BstV1I	GCAGC	5 cut(s)	97, 136, 337, 386, 614
BstV2I	GAAGAC	2 cut(s)	41, 554
BstXI	CCANNNNNNTGG	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	76
BtrI	CACGTC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	330
BtsI	GCAGTG	1 cut(s)	458
BtsIMutI	CAGTG	1 cut(s)	458
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	2 cut(s)	355, 607
CciI	TCATGA	1 cut(s)	750
Cfr13I	GGNCC	3 cut(s)	536, 692, 740
Csp6I	GTAC	3 cut(s)	49, 252, 614
CviAII	CATG	3 cut(s)	411, 606, 751
CviQI	GTAC	3 cut(s)	49, 252, 614
DdeI	CTNAG	2 cut(s)	293, 378
DpnI	GATC	2 cut(s)	248, 429
DpnII	GATC	2 cut(s)	246, 427
EaeI	YGGCCR	1 cut(s)	74
EciI	GGCGGA	1 cut(s)	117
Eco47I	GGWCC	3 cut(s)	536, 692, 740
Eco57I	CTGAAG	1 cut(s)	373
EcoO109I	RGGNCCY	1 cut(s)	692
EcoRII	CCWGG	1 cut(s)	657
FaeI	CATG	3 cut(s)	414, 609, 754
FaqI	GGGAC	2 cut(s)	177, 574
FatI	CATG	3 cut(s)	410, 605, 750
FauI	CCCGC	2 cut(s)	350, 426
Fnu4HI	GCNGC	5 cut(s)	111, 150, 351, 375, 603
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	5 cut(s)	111, 150, 351, 375, 603
FspBI	CTAG	2 cut(s)	632, 720
GluI	GCNGC	5 cut(s)	111, 150, 351, 375, 603
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	1 cut(s)	369
Hin1II	CATG	3 cut(s)	414, 609, 754
HinfI	GANTC	3 cut(s)	105, 289, 754
HpaII	CCGG	1 cut(s)	369
Hpy188I	TCNGA	1 cut(s)	783
Hpy188III	TCNNGA	7 cut(s)	233, 286, 344, 687, 711, 720, 751
Hpy99I	CGWCG	2 cut(s)	56, 82
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	726
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	6 cut(s)	410, 451, 575, 602, 701, 731
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 380, 587
HpyF3I	CTNAG	2 cut(s)	293, 378
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	3 cut(s)	414, 609, 754
Kzo9I	GATC	2 cut(s)	246, 427
LmnI	GCTCC	1 cut(s)	656
Lsp1109I	GCAGC	5 cut(s)	97, 136, 337, 386, 614
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	2 cut(s)	632, 720
MaeII	ACGT	1 cut(s)	54
MalI	GATC	2 cut(s)	248, 429
MboI	GATC	2 cut(s)	246, 427
MboII	GAAGA	6 cut(s)	40, 43, 46, 110, 559, 586
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	3 cut(s)	306, 510, 675
MlyI	GAGTC	2 cut(s)	99, 283
MmeI	TCCRAC	1 cut(s)	718
MnlI	CCTC	4 cut(s)	373, 664, 683, 753
MroXI	GAANNNNTTC	2 cut(s)	511, 777
MseI	TTAA	2 cut(s)	332, 672
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	2 cut(s)	370, 659
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	701
MvaI	CCWGG	1 cut(s)	659
MwoI	GCNNNNNNNGC	3 cut(s)	374, 380, 587
NciI	CCSGG	1 cut(s)	370
NdeII	GATC	2 cut(s)	246, 427
NlaIII	CATG	3 cut(s)	414, 609, 754
NlaIV	GGNNCC	2 cut(s)	652, 694
NspI	RCATGY	2 cut(s)	414, 609
PaeI	GCATGC	1 cut(s)	609
PagI	TCATGA	1 cut(s)	750
PctI	GAATGC	1 cut(s)	701
PdmI	GAANNNNTTC	2 cut(s)	511, 777
PfeI	GAWTC	1 cut(s)	754
PkrI	GCNGC	5 cut(s)	112, 151, 352, 376, 604
PleI	GAGTC	2 cut(s)	99, 283
PpsI	GAGTC	2 cut(s)	99, 283
PpuMI	RGGWCCY	1 cut(s)	692
Psp5II	RGGWCCY	1 cut(s)	692
Psp6I	CCWGG	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	657
PspN4I	GGNNCC	2 cut(s)	652, 694
PspPI	GGNCC	3 cut(s)	536, 692, 740
PspPPI	RGGWCCY	1 cut(s)	692
PsrI	GAACNNNNNNTAC	2 cut(s)	612, 644
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	3 cut(s)	50, 253, 615
RsaNI	GTAC	3 cut(s)	49, 252, 614
SaqAI	TTAA	2 cut(s)	332, 672
SatI	GCNGC	5 cut(s)	111, 150, 351, 375, 603
Sau3AI	GATC	2 cut(s)	246, 427
Sau96I	GGNCC	3 cut(s)	536, 692, 740
SchI	GAGTC	2 cut(s)	99, 283
ScrFI	CCNGG	2 cut(s)	370, 659
SduI	GDGCHC	1 cut(s)	670
SetI	ASST	6 cut(s)	8, 57, 352, 379, 426, 745
SfaNI	GCATC	1 cut(s)	469
SinI	GGWCC	3 cut(s)	536, 692, 740
SphI	GCATGC	1 cut(s)	609
Sse9I	AATT	3 cut(s)	306, 510, 675
SsiI	CCGC	4 cut(s)	102, 357, 419, 581
SspMI	CTAG	2 cut(s)	632, 720
StyD4I	CCNGG	2 cut(s)	368, 657
TaaI	ACNGT	1 cut(s)	726
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	285
TasI	AATT	3 cut(s)	306, 510, 675
TfiI	GAWTC	1 cut(s)	754
Tru1I	TTAA	2 cut(s)	332, 672
Tru9I	TTAA	2 cut(s)	332, 672
TscAI	CASTG	1 cut(s)	458
TseI	GCWGC	5 cut(s)	110, 149, 350, 374, 602
TspDTI	ATGAA	1 cut(s)	786
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	458
VpaK11BI	GGWCC	3 cut(s)	536, 692, 740
XapI	RAATTY	2 cut(s)	510, 675
XbaI	TCTAGA	1 cut(s)	719
XceI	RCATGY	2 cut(s)	414, 609
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
XmnI	GAANNNNTTC	2 cut(s)	511, 777
XspI	CTAG	2 cut(s)	632, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.