Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004537

Physical Location & Seq

Genomic Coordinates Forward (+)

22770456 .. 22772261

Gene Structure 1806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20790.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGAAGAGAAGCTGAGATCAGTCATCGGAATCCCAAAGGACGTGCACGTGAACAAAGAGCTGGGTCTGACCATGGAAGAACACCGCCGTAAGAGGAAGGACAAGGCCGACATTGCTGATCCCTCGAACCCCCTTTTCATCCGTTCACGGTGGCGGCAGCATTGGCCCTCTATCAAACCCTTCCTCAACGGCGGAGCTATCGGCGTTCTTGCGGGCTCCTGGGCTTCCCTTTACTACTCCAAGAGCTATATGTATGCTCAGTGTCGCCAGATTCCGATGCTCCACTATTATACCAAGATTCTTCCCGGTGCGATTTACATTCATGTGTTGACGGTGAGCCAGCAATTGGGATTGTATGAGATTTTGAGAAATAAAGCAATTGCTACAAACGAAGGAATGCCACCCACTCTTTGTCAAGAGGCTGCTTGTGGGTTGGCTGTTGGAGCAACTGGAGCATTGATCAATTTTCCATTATACTCTGGGTATCTTTTGTATAATTGTCATCTAGCAACCAAACGATTTCCTATTAACAGATACGTATTTTCATTTGTCCGTAATATGGCAACCCAGAGAGCTTTGTTTCGAGAAATGTGGAATTATGTAGGTCCTTTTCTGAAGAGGAAGATGTGGTTAGACATGGGCATGCTCGCATCATATAATCCAAGCCTTGATTATCTCAGGGAGTCTTGTGGTTTTAGTGAAGCAAAAGCACAATTGGGTGCAAGTGCTTCGTCAGCATTCTTTGCTGCAGCATGCAGTTTACCCTCAAAACACATTCGCATAGTCAGACGAGAAACTGGATATGCTAGCTCTCTGGATTGTGCCCTTGCAATTCTAAAATCAAGAGGTCCTCTTGGCTTCTTTACTGGATTCCCCACATGTTTTAGCCGTGTTGCACTTCCAATCATGACTACATGGTTTGTCTTGGAAAAGATTCGGAAACTCGAGATGTCAATTGGACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

322

Amino Acids

36.25

Weight (kDa)

9.69

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g45510 FvH4_3g45510
malus_domestica	MD07G1230400.v1.1 MD11G1003900.v1.1
pyrus_communis	pycom07g20790 pycom11g00390
rosa_chinensis	RchiOBHm_Chr5g0083431 RchiOBHm_Chr5g0083561 RchiOBHm_Chr5g0083641
rosa_laevigata	RLG00000037032
rosa_multiflora	Rmu_sc0001444.1_g000005 Rmu_sc0001444.1_g000011 Rmu_sc0002245.1_g000025 Rmu_sc0002245.1_g000038
rosa_roxburghii	Rroxscaffold_1G00001110
rosa_rugosa	Rorug05G0484600 Rorug05G0484700
rosa_samantha	Rh5AG534000 Rh5AG535700 Rh5AG536600 Rh5AG537100 Rh5AG537900 Rh5BG562000 Rh5BG562300 Rh5BG562700 Rh5CG584400 Rh5CG584700 Rh5CG584900
rosa_wichuraiana	Rw5G049880 Rw5G050470 Rw5G050480 Rw5G050550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	346
AciI	CCGC	4 cut(s)	85, 154, 192, 212
AclWI	GGATC	1 cut(s)	113
AcuI	CTGAAG	1 cut(s)	635
AcvI	CACGTG	1 cut(s)	49
AfiI	CCNNNNNNNGG	2 cut(s)	346, 559
AflIII	ACRYGT	1 cut(s)	878
AjiI	CACGTC	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	218
AluBI	AGCT	6 cut(s)	13, 61, 197, 246, 575, 810
AluI	AGCT	6 cut(s)	13, 61, 197, 246, 575, 810
Alw21I	GWGCWC	1 cut(s)	48
Alw44I	GTGCAC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	113
Ama87I	CYCGRG	1 cut(s)	944
AoxI	GGCC	2 cut(s)	105, 164
ApaLI	GTGCAC	1 cut(s)	44
ApeKI	GCWGC	4 cut(s)	157, 422, 746, 749
Asp700I	GAANNNNTTC	1 cut(s)	933
AspS9I	GGNCC	3 cut(s)	165, 605, 848
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	1 cut(s)	346
AsuNHI	GCTAGC	1 cut(s)	806
AvaI	CYCGRG	1 cut(s)	944
AvaII	GGWCC	2 cut(s)	605, 848
BaeGI	GKGCMC	2 cut(s)	48, 826
BanII	GRGCYC	1 cut(s)	218
BbrPI	CACGTG	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	4 cut(s)	169, 409, 733, 761
BceAI	ACGGC	3 cut(s)	72, 205, 873
BcgI	CGANNNNNNTGC	2 cut(s)	711, 745
BciT130I	CCWGG	1 cut(s)	220
BclI	TGATCA	1 cut(s)	459
BcnI	CCSGG	1 cut(s)	306
BfaI	CTAG	2 cut(s)	506, 807
BfmI	CTRYAG	2 cut(s)	747, 962
BisI	GCNGC	5 cut(s)	155, 158, 423, 747, 750
BlsI	GCNGC	5 cut(s)	156, 159, 424, 748, 751
Bme1390I	CCNGG	2 cut(s)	220, 306
Bme18I	GGWCC	2 cut(s)	605, 848
BmeT110I	CYCGRG	1 cut(s)	944
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	3 cut(s)	165, 605, 848
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	2 cut(s)	220, 306
BmsI	GCATC	2 cut(s)	267, 659
BmtI	GCTAGC	1 cut(s)	810
BpmI	CTGGAG	1 cut(s)	471
BpuMI	CCSGG	1 cut(s)	306
BsaAI	YACGTR	2 cut(s)	49, 538
BsaJI	CCNNGG	2 cut(s)	72, 219
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 559
Bse1I	ACTGG	3 cut(s)	454, 802, 871
Bse3DI	GCAATG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	220
BseDI	CCNNGG	2 cut(s)	72, 219
BseGI	GGATG	1 cut(s)	138
BseLI	CCNNNNNNNGG	2 cut(s)	346, 559
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	3 cut(s)	5, 272, 691
BseNI	ACTGG	3 cut(s)	454, 802, 871
BseSI	GKGCMC	2 cut(s)	48, 826
BseXI	GCAGC	4 cut(s)	169, 409, 733, 761
BseYI	CCCAGC	1 cut(s)	61
BshFI	GGCC	2 cut(s)	107, 166
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	944
BsiSI	CCGG	1 cut(s)	306
BslI	CCNNNNNNNGG	2 cut(s)	346, 559
BsmI	GAATGC	2 cut(s)	402, 737
BsnI	GGCC	2 cut(s)	107, 166
BsoBI	CYCGRG	1 cut(s)	944
Bsp1286I	GDGCHC	3 cut(s)	48, 218, 826
Bsp143I	GATC	3 cut(s)	17, 118, 459
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	4 cut(s)	85, 154, 192, 212
BspANI	GGCC	2 cut(s)	107, 166
BspCNI	CTCAG	3 cut(s)	6, 271, 690
BspHI	TCATGA	1 cut(s)	906
BspLI	GGNNCC	1 cut(s)	217
BspMAI	CTGCAG	1 cut(s)	751
BspOI	GCTAGC	1 cut(s)	810
BspPI	GGATC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	111
BsrI	ACTGG	3 cut(s)	454, 802, 871
BssECI	CCNNGG	2 cut(s)	72, 219
BssMI	GATC	3 cut(s)	17, 118, 459
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	220
Bst4CI	ACNGT	3 cut(s)	150, 334, 963
Bst6I	CTCTTC	1 cut(s)	611
BstAPI	GCANNNNNTGC	1 cut(s)	743
BstBAI	YACGTR	2 cut(s)	49, 538
BstC8I	GCNNGC	6 cut(s)	214, 341, 644, 648, 754, 808
BstDEI	CTNAG	3 cut(s)	14, 258, 677
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	138
BstKTI	GATC	3 cut(s)	20, 121, 462
BstMBI	GATC	3 cut(s)	17, 118, 459
BstMWI	GCNNNNNNNGC	6 cut(s)	113, 163, 443, 452, 734, 743
BstNI	CCWGG	1 cut(s)	220
BstNSI	RCATGY	3 cut(s)	646, 756, 882
BstSCI	CCNGG	2 cut(s)	218, 304
BstSFI	CTRYAG	2 cut(s)	747, 962
BstSLI	GKGCMC	2 cut(s)	48, 826
BstSNI	TACGTA	1 cut(s)	538
BstV1I	GCAGC	4 cut(s)	169, 409, 733, 761
BsuRI	GGCC	2 cut(s)	107, 166
BtgI	CCRYGG	1 cut(s)	72
BtrI	CACGTC	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	266
Cac8I	GCNNGC	6 cut(s)	214, 341, 644, 648, 754, 808
CciI	TCATGA	1 cut(s)	906
Cfr13I	GGNCC	3 cut(s)	165, 605, 848
CviAII	CATG	8 cut(s)	73, 323, 637, 643, 753, 879, 907, 915
DdeI	CTNAG	3 cut(s)	14, 258, 677
DpnI	GATC	3 cut(s)	19, 120, 461
DpnII	GATC	3 cut(s)	17, 118, 459
Eam1104I	CTCTTC	1 cut(s)	611
EarI	CTCTTC	1 cut(s)	611
EciI	GGCGGA	1 cut(s)	207
Eco105I	TACGTA	1 cut(s)	538
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	218
Eco47I	GGWCC	2 cut(s)	605, 848
Eco57I	CTGAAG	1 cut(s)	635
Eco72I	CACGTG	1 cut(s)	49
Eco88I	CYCGRG	1 cut(s)	944
EcoO109I	RGGNCCY	2 cut(s)	605, 848
EcoRII	CCWGG	1 cut(s)	218
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	8 cut(s)	76, 326, 640, 646, 756, 882, 910, 918
FatI	CATG	8 cut(s)	72, 322, 636, 642, 752, 878, 906, 914
FauI	CCCGC	1 cut(s)	205
FbaI	TGATCA	1 cut(s)	459
Fnu4HI	GCNGC	5 cut(s)	155, 158, 423, 747, 750
FokI	GGATG	1 cut(s)	125
FriOI	GRGCYC	1 cut(s)	218
Fsp4HI	GCNGC	5 cut(s)	155, 158, 423, 747, 750
FspBI	CTAG	2 cut(s)	506, 807
GluI	GCNGC	5 cut(s)	155, 158, 423, 747, 750
GsaI	CCCAGC	1 cut(s)	65
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	107, 166
HapII	CCGG	1 cut(s)	306
Hin1II	CATG	8 cut(s)	76, 326, 640, 646, 756, 882, 910, 918
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HinfI	GANTC	6 cut(s)	30, 271, 298, 683, 870, 934
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	1 cut(s)	346
Hpy166II	GTNNAC	5 cut(s)	46, 52, 146, 330, 761
Hpy188I	TCNGA	6 cut(s)	29, 69, 276, 615, 788, 939
Hpy188III	TCNNGA	6 cut(s)	416, 584, 815, 843, 907, 946
Hpy8I	GTNNAC	5 cut(s)	46, 52, 146, 330, 761
HpyAV	CCTTC	3 cut(s)	91, 190, 386
HpyCH4III	ACNGT	3 cut(s)	150, 334, 963
HpyCH4IV	ACGT	3 cut(s)	42, 48, 537
HpyCH4V	TGCA	6 cut(s)	46, 722, 749, 756, 830, 896
HpyF10VI	GCNNNNNNNGC	6 cut(s)	113, 163, 443, 452, 734, 743
HpyF3I	CTNAG	3 cut(s)	14, 258, 677
HpySE526I	ACGT	3 cut(s)	42, 48, 537
Hsp92II	CATG	8 cut(s)	76, 326, 640, 646, 756, 882, 910, 918
Ksp22I	TGATCA	1 cut(s)	459
Kzo9I	GATC	3 cut(s)	17, 118, 459
LmnI	GCTCC	5 cut(s)	194, 221, 285, 443, 452
Lsp1109I	GCAGC	4 cut(s)	169, 409, 733, 761
LweI	GCATC	2 cut(s)	267, 659
MaeI	CTAG	2 cut(s)	506, 807
MaeII	ACGT	3 cut(s)	42, 48, 537
MalI	GATC	3 cut(s)	19, 120, 461
MboI	GATC	3 cut(s)	17, 118, 459
MboII	GAAGA	5 cut(s)	17, 89, 293, 628, 634
MfeI	CAATTG	4 cut(s)	344, 378, 713, 954
MhlI	GDGCHC	3 cut(s)	48, 218, 826
MluCI	AATT	8 cut(s)	344, 378, 463, 496, 595, 713, 831, 954
MlyI	GAGTC	1 cut(s)	692
MmeI	TCCRAC	1 cut(s)	421
MnlI	CCTC	9 cut(s)	87, 133, 178, 194, 412, 612, 775, 839, 861
MroXI	GAANNNNTTC	1 cut(s)	933
MseI	TTAA	1 cut(s)	528
MslI	CAYNNNNRTG	2 cut(s)	323, 641
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	2 cut(s)	220, 306
MunI	CAATTG	4 cut(s)	344, 378, 713, 954
Mva1269I	GAATGC	2 cut(s)	402, 737
MvaI	CCWGG	1 cut(s)	220
MwoI	GCNNNNNNNGC	6 cut(s)	113, 163, 443, 452, 734, 743
NciI	CCSGG	1 cut(s)	306
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	3 cut(s)	17, 118, 459
NheI	GCTAGC	1 cut(s)	806
NlaIII	CATG	8 cut(s)	76, 326, 640, 646, 756, 882, 910, 918
NlaIV	GGNNCC	1 cut(s)	217
NspI	RCATGY	3 cut(s)	646, 756, 882
PaeI	GCATGC	2 cut(s)	646, 756
PaeR7I	CTCGAG	1 cut(s)	944
PagI	TCATGA	1 cut(s)	906
PciI	ACATGT	1 cut(s)	878
PctI	GAATGC	2 cut(s)	402, 737
PdmI	GAANNNNTTC	1 cut(s)	933
PfeI	GAWTC	5 cut(s)	30, 271, 298, 870, 934
PflMI	CCANNNNNTGG	1 cut(s)	346
PkrI	GCNGC	5 cut(s)	156, 159, 424, 748, 751
PleI	GAGTC	1 cut(s)	691
PmaCI	CACGTG	1 cut(s)	49
PmlI	CACGTG	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	691
Ppu21I	YACGTR	2 cut(s)	49, 538
PpuMI	RGGWCCY	2 cut(s)	605, 848
PscI	ACATGT	1 cut(s)	878
Psp5II	RGGWCCY	2 cut(s)	605, 848
Psp6I	CCWGG	1 cut(s)	218
PspCI	CACGTG	1 cut(s)	49
PspFI	CCCAGC	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	3 cut(s)	165, 605, 848
PspPPI	RGGWCCY	2 cut(s)	605, 848
PstI	CTGCAG	1 cut(s)	751
RseI	CAYNNNNRTG	2 cut(s)	323, 641
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	5 cut(s)	155, 158, 423, 747, 750
Sau3AI	GATC	3 cut(s)	17, 118, 459
Sau96I	GGNCC	3 cut(s)	165, 605, 848
SchI	GAGTC	1 cut(s)	692
ScrFI	CCNGG	2 cut(s)	220, 306
SduI	GDGCHC	3 cut(s)	48, 218, 826
SfaNI	GCATC	2 cut(s)	267, 659
SfcI	CTRYAG	2 cut(s)	747, 962
Sfr274I	CTCGAG	1 cut(s)	944
SinI	GGWCC	2 cut(s)	605, 848
SlaI	CTCGAG	1 cut(s)	944
SmiMI	CAYNNNNRTG	2 cut(s)	323, 641
SmlI	CTYRAG	1 cut(s)	944
SmoI	CTYRAG	1 cut(s)	944
SnaBI	TACGTA	1 cut(s)	538
SphI	GCATGC	2 cut(s)	646, 756
Sse9I	AATT	8 cut(s)	344, 378, 463, 496, 595, 713, 831, 954
SsiI	CCGC	4 cut(s)	85, 154, 192, 212
SspMI	CTAG	2 cut(s)	506, 807
StyD4I	CCNGG	2 cut(s)	218, 304
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	3 cut(s)	150, 334, 963
TaiI	ACGT	3 cut(s)	45, 51, 540
TaqI	TCGA	3 cut(s)	125, 583, 945
TasI	AATT	8 cut(s)	344, 378, 463, 496, 595, 713, 831, 954
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	5 cut(s)	30, 271, 298, 870, 934
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TscAI	CASTG	1 cut(s)	266
TseI	GCWGC	4 cut(s)	157, 422, 746, 749
TspDTI	ATGAA	3 cut(s)	127, 311, 534
TspGWI	ACGGA	2 cut(s)	131, 542
TspRI	CASTG	1 cut(s)	266
Van91I	CCANNNNNTGG	1 cut(s)	346
VneI	GTGCAC	1 cut(s)	44
VpaK11BI	GGWCC	2 cut(s)	605, 848
XceI	RCATGY	3 cut(s)	646, 756, 882
XhoI	CTCGAG	1 cut(s)	944
XmnI	GAANNNNTTC	1 cut(s)	933
XspI	CTAG	2 cut(s)	506, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.