Rh5AG537900

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004537
Physical Location & Seq
Forward (+)
92541715 .. 92543758
2044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG537900.1

Sequence Viewer

Length: 516 bp
ATGTTCCTTTCGCTGCCATCTACTACTCCCCATTGTTATCTCCCGTTCGCCGAAGTCCCAGATTTCTGGGCTTCAACATTCTTGCCAAGGACTCTAAGAAACAAAGCAATTGCTACCAATGATGGAATGGCATTAACTCTTTATCAGGAAGCTGCTTGCGGGTTGATTGCCGGGGCAGCTGAGGCATACTTCAGTTTTCCATTTGTTTCTGCATGTCTCCCGCAGGTTGATCCTACTACTTTATCAGTAGTGCAGCGTGCCAAATACAGAAACATATTTGATGCTTTCTACTCGGGTGCAAGTGCGGTTTCAGCGTTCTTCGGTGCAGCATGCTCTGTACCAGTAAAAAATGTTCTAGCACAAGGGAAAAGTGGCTCCTCCCTGGATTGTGCCCTTAAAATTCTAAAATCAAGAGGACTCCTTGCATTCTTTTCAGGATTTTCTAGACAGTTTGCACTTGTTGGACCTCCTATCATGATTCTGTGGTTTGCTTATGAACATGTTCGGAAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

171

Amino Acids

18.55

Weight (kDa)

9.06

Isoelectric Point (pI)

41.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 121 - 171 8e-06 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 214
AciI CCGC 3 cut(s) 159, 221, 305
AclWI GGATC 1 cut(s) 224
AcsI RAATTY 1 cut(s) 399
AcuI CTGAAG 1 cut(s) 175
AfaI GTAC 1 cut(s) 339
AflIII ACRYGT 1 cut(s) 499
AgsI TTSAA 1 cut(s) 75
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 2 cut(s) 152, 179
AluI AGCT 2 cut(s) 152, 179
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 292
ApeKI GCWGC 5 cut(s) 13, 152, 176, 253, 326
ApoI RAATTY 1 cut(s) 399
Asp700I GAANNNNTTC 1 cut(s) 501
AspS9I GGNCC 1 cut(s) 464
AsuC2I CCSGG 1 cut(s) 172
AvaI CYCGRG 1 cut(s) 292
AvaII GGWCC 1 cut(s) 464
BaeGI GKGCMC 1 cut(s) 394
BbvCI CCTCAGC 1 cut(s) 180
BbvI GCAGC 4 cut(s) 139, 188, 265, 338
BccI CCATC 2 cut(s) 25, 116
BciT130I CCWGG 1 cut(s) 383
BcnI CCSGG 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 2 cut(s) 356, 444
BfuAI ACCTGC 1 cut(s) 214
BisI GCNGC 5 cut(s) 14, 153, 177, 254, 327
BlsI GCNGC 5 cut(s) 15, 154, 178, 255, 328
Bme1390I CCNGG 2 cut(s) 172, 383
Bme18I GGWCC 1 cut(s) 464
BmeT110I CYCGRG 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 464
BmiI GGNNCC 1 cut(s) 376
BmrFI CCNGG 2 cut(s) 172, 383
BmsI GCATC 1 cut(s) 271
Bpu10I CCTNAGC 1 cut(s) 180
BpuMI CCSGG 1 cut(s) 172
BsaJI CCNNGG 3 cut(s) 86, 171, 381
Bse1I ACTGG 1 cut(s) 341
BseBI CCWGG 1 cut(s) 383
BseDI CCNNGG 3 cut(s) 86, 171, 381
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 341
BseRI GAGGAG 1 cut(s) 367
BseSI GKGCMC 1 cut(s) 394
BseXI GCAGC 4 cut(s) 139, 188, 265, 338
BsgI GTGCAG 2 cut(s) 272, 345
BsiHKCI CYCGRG 1 cut(s) 292
BsiSI CCGG 1 cut(s) 171
BslFI GGGAC 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 425
BsoBI CYCGRG 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 394
Bsp143I GATC 1 cut(s) 229
BspACI CCGC 3 cut(s) 159, 221, 305
BspCNI CTCAG 1 cut(s) 172
BspHI TCATGA 1 cut(s) 474
BspLI GGNNCC 1 cut(s) 376
BspMI ACCTGC 1 cut(s) 214
BspPI GGATC 1 cut(s) 224
BsrI ACTGG 1 cut(s) 341
BssECI CCNNGG 3 cut(s) 86, 171, 381
BssMI GATC 1 cut(s) 229
BssT1I CCWWGG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 1 cut(s) 450
BstC8I GCNNGC 3 cut(s) 157, 258, 331
BstDEI CTNAG 2 cut(s) 95, 180
BstKTI GATC 1 cut(s) 232
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 3 cut(s) 176, 182, 311
BstNI CCWGG 1 cut(s) 383
BstNSI RCATGY 3 cut(s) 216, 333, 503
BstSCI CCNGG 2 cut(s) 170, 381
BstSLI GKGCMC 1 cut(s) 394
BstV1I GCAGC 4 cut(s) 139, 188, 265, 338
BstXI CCANNNNNNTGG 1 cut(s) 66
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 3 cut(s) 157, 258, 331
CciI TCATGA 1 cut(s) 474
Cfr13I GGNCC 1 cut(s) 464
Csp6I GTAC 1 cut(s) 338
CviAII CATG 4 cut(s) 213, 330, 475, 500
CviJI RGCY 4 cut(s) 71, 152, 179, 375
CviKI_1 RGCY 4 cut(s) 71, 152, 179, 375
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 2 cut(s) 95, 180
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 464
Eco57I CTGAAG 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 381
EcoT14I CCWWGG 1 cut(s) 86
ErhI CCWWGG 1 cut(s) 86
FaeI CATG 4 cut(s) 216, 333, 478, 503
FaiI YATR 7 cut(s) 187, 214, 275, 331, 476, 495, 501
FaqI GGGAC 1 cut(s) 41
FatI CATG 4 cut(s) 212, 329, 474, 499
FauI CCCGC 2 cut(s) 152, 228
Fnu4HI GCNGC 5 cut(s) 14, 153, 177, 254, 327
Fsp4HI GCNGC 5 cut(s) 14, 153, 177, 254, 327
FspBI CTAG 2 cut(s) 356, 444
GluI GCNGC 5 cut(s) 14, 153, 177, 254, 327
HapII CCGG 1 cut(s) 171
Hin1II CATG 4 cut(s) 216, 333, 478, 503
HinfI GANTC 3 cut(s) 91, 417, 478
HpaII CCGG 1 cut(s) 171
Hpy188I TCNGA 1 cut(s) 507
Hpy188III TCNNGA 5 cut(s) 146, 411, 435, 444, 475
HpyCH4III ACNGT 1 cut(s) 450
HpyCH4V TGCA 6 cut(s) 212, 253, 299, 326, 425, 455
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 182, 311
HpyF3I CTNAG 2 cut(s) 95, 180
Hsp92II CATG 4 cut(s) 216, 333, 478, 503
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 380
LpnPI CCDG 9 cut(s) 52, 72, 131, 184, 209, 354, 368, 395, 420
Lsp1109I GCAGC 4 cut(s) 139, 188, 265, 338
LweI GCATC 1 cut(s) 271
MaeI CTAG 2 cut(s) 356, 444
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 1 cut(s) 310
MfeI CAATTG 1 cut(s) 108
MhlI GDGCHC 1 cut(s) 394
MluCI AATT 2 cut(s) 108, 399
MlyI GAGTC 2 cut(s) 85, 411
MmeI TCCRAC 1 cut(s) 442
MnlI CCTC 4 cut(s) 175, 388, 407, 477
MroXI GAANNNNTTC 1 cut(s) 501
MseI TTAA 2 cut(s) 134, 396
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 2 cut(s) 172, 383
MunI CAATTG 1 cut(s) 108
Mva1269I GAATGC 1 cut(s) 425
MvaI CCWGG 1 cut(s) 383
MwoI GCNNNNNNNGC 3 cut(s) 176, 182, 311
NciI CCSGG 1 cut(s) 172
NdeII GATC 1 cut(s) 229
NlaIII CATG 4 cut(s) 216, 333, 478, 503
NlaIV GGNNCC 1 cut(s) 376
NspI RCATGY 3 cut(s) 216, 333, 503
PaeI GCATGC 1 cut(s) 333
PagI TCATGA 1 cut(s) 474
PciI ACATGT 1 cut(s) 499
PctI GAATGC 1 cut(s) 425
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 1 cut(s) 478
PkrI GCNGC 5 cut(s) 15, 154, 178, 255, 328
PleI GAGTC 2 cut(s) 85, 411
PpsI GAGTC 2 cut(s) 85, 411
PscI ACATGT 1 cut(s) 499
Psp6I CCWGG 1 cut(s) 381
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 376
PspPI GGNCC 1 cut(s) 464
PsrI GAACNNNNNNTAC 2 cut(s) 336, 368
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
SaqAI TTAA 2 cut(s) 134, 396
SatI GCNGC 5 cut(s) 14, 153, 177, 254, 327
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 1 cut(s) 464
SchI GAGTC 2 cut(s) 85, 411
ScrFI CCNGG 2 cut(s) 172, 383
SduI GDGCHC 1 cut(s) 394
SetI ASST 4 cut(s) 154, 181, 228, 469
SfaNI GCATC 1 cut(s) 271
SinI GGWCC 1 cut(s) 464
SphI GCATGC 1 cut(s) 333
Sse9I AATT 2 cut(s) 108, 399
SsiI CCGC 3 cut(s) 159, 221, 305
SspMI CTAG 2 cut(s) 356, 444
StyD4I CCNGG 2 cut(s) 170, 381
StyI CCWWGG 1 cut(s) 86
TaaI ACNGT 1 cut(s) 450
TasI AATT 2 cut(s) 108, 399
TfiI GAWTC 1 cut(s) 478
Tru1I TTAA 2 cut(s) 134, 396
Tru9I TTAA 2 cut(s) 134, 396
TseI GCWGC 5 cut(s) 13, 152, 176, 253, 326
TspDTI ATGAA 1 cut(s) 510
VpaK11BI GGWCC 1 cut(s) 464
XapI RAATTY 1 cut(s) 399
XbaI TCTAGA 1 cut(s) 443
XceI RCATGY 3 cut(s) 216, 333, 503
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 501
XspI CTAG 2 cut(s) 356, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.