Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005187

Physical Location & Seq

Genomic Coordinates Reverse (-)

3437069 .. 3438739

Gene Structure 1671 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGAAACACTGAGACACCGTAGACCCTCAAAGAGAAGATACAGAATACTCCCATCAAGTTTCTCTGGTTCATCTCAAGAACAGAGAAATTTACTATGGAAGATCTTGAAAAAAGTATCTTTGAAGTTCAACAAATTTGTCACGGTTGAAAAGTTGAAAGCCATAGTAGTACACAGAAAGAGAAGCAATTCAGGTAAGTTCCAGGAGCCTCTTATGGATAGTATCAATCATAATGGGATTGAAGAAGACCAAATACCATTTGATCAAGTCATTCAGAAGGTACCCAAATCCCAAAAACTTCACCACAATTCAAGGAGAATGAAAATATATGTCAAAATCCCATCAAACCAGAAGACCAGTGTATTTGAAGCAAAAGAGTTCCATATCATTAATGACATCAAATCCATGATTCAGTTGAAGGAGGGGATCCTATCAAATCAGTACACTTTGGTTCATGGTGGAAATCTTCTACAAGATTACAGGTCGTTGGCCTCACTTAACATTCATACAGAATCCACCCTTCATATGATTTTCAACCCAAGAGATGTGATGTTAATTTTTGTGAAAATACCAAGTGGGAAGATCGTTCAATTTGAAGTTAAGGTCCTGTACACTATCCGTGATGTCAAGCAGATTGTTGAGAGCTTTATAGGGTGTTCAGTTGTTGAATGTAGTATGGTTTATGAAGGAATTGAGCTACAAGATTTGAAGACCTTAGCTTTCTACAGCATTGAAGAAAATTCCACTCTAGAGGTGAAGCCTTATTGGATTCAGATATTTGTCAAGACATGGAGTGGAAAAACCATTACACTTGATGTGACGCAATCGAATACTGTAAGAGAGGTTAAGGAGAAGATATTTTGTAAGGTTAGAGTGCCAGTTATGCATCAGAGTATCGTATTTGCTGGAAAACGCCTTCAAGATAAACGCTCTCTTTCAAGTTACAACATTCACAAACAGTCCACTCTCCACATGGTTATGGCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

330

Amino Acids

38.38

Weight (kDa)

9.84

Isoelectric Point (pI)

55.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	109 - 180	5.9e-09	Ubiquitin family
ubiquitin	PF00240	186 - 252	1.6e-09	Ubiquitin family
Rad60-SLD	PF11976	257 - 326	5.3e-08	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	259 - 327	6.5e-22	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005187)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03990 FvH4_4g03992
malus_domestica	MD16G1221600.v1.1
prunus_persica	Prupe.1G041900_v2.0.a1 Prupe.1G042000_v2.0.a1
pyrus_communis	pycom13g18970
rosa_chinensis	RchiOBHm_Chr4g0394221 RchiOBHm_Chr4g0394231 RchiOBHm_Chr4g0394241
rosa_laevigata	RLG00000009712
rosa_multiflora	Rmu_co7959593.1_g000001 Rmu_co8171576.1_g000001 Rmu_sc0000295.1_g000005 Rmu_sc0007246.1_g000006 Rmu_sc0007246.1_g000007 Rmu_sc0024069.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339280 Rroxscaffold_5G00339290
rosa_samantha	Rh4AG050900 Rh4AG051000 Rh4BG047800 Rh4BG047900 Rh4BG048000 Rh4CG054500 Rh4CG054600 Rh4CG054700 Rh4DG047500 Rh4DG047700
rosa_wichuraiana	Rw4G004050 Rw4G004060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	280
AccB1I	GGYRCC	1 cut(s)	280
AccI	GTMKAC	1 cut(s)	22
AclWI	GGATC	2 cut(s)	421, 434
AcsI	RAATTY	3 cut(s)	88, 134, 739
AfaI	GTAC	4 cut(s)	171, 282, 443, 611
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	3 cut(s)	645, 697, 719
AluI	AGCT	3 cut(s)	645, 697, 719
Alw26I	GTCTC	1 cut(s)	7
AlwI	GGATC	2 cut(s)	421, 434
AoxI	GGCC	1 cut(s)	489
ApoI	RAATTY	3 cut(s)	88, 134, 739
AseI	ATTAAT	1 cut(s)	390
Asp700I	GAANNNNTTC	1 cut(s)	187
Asp718I	GGTACC	1 cut(s)	280
AspS9I	GGNCC	1 cut(s)	604
AsuHPI	GGTGA	2 cut(s)	293, 766
AvaII	GGWCC	1 cut(s)	604
BamHI	GGATCC	1 cut(s)	426
BanI	GGYRCC	1 cut(s)	280
BarI	GAAGNNNNNNTAC	2 cut(s)	237, 269
BbsI	GAAGAC	3 cut(s)	252, 359, 716
BccI	CCATC	2 cut(s)	61, 349
BciT130I	CCWGG	1 cut(s)	203
BclI	TGATCA	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	7
BfaI	CTAG	1 cut(s)	749
BfmI	CTRYAG	1 cut(s)	724
BglII	AGATCT	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	1 cut(s)	604
BmgT120I	GGNCC	1 cut(s)	604
BmiI	GGNNCC	3 cut(s)	207, 282, 428
BmrFI	CCNGG	1 cut(s)	203
BmsI	GCATC	1 cut(s)	895
BpiI	GAAGAC	3 cut(s)	252, 359, 716
Bpu10I	CCTNAGC	1 cut(s)	715
BpuEI	CTTGAG	1 cut(s)	60
Bse1I	ACTGG	2 cut(s)	357, 878
BseBI	CCWGG	1 cut(s)	203
BseNI	ACTGG	2 cut(s)	357, 878
BshFI	GGCC	1 cut(s)	491
BshNI	GGYRCC	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	7
BsnI	GGCC	1 cut(s)	491
Bsp1407I	TGTACA	1 cut(s)	609
Bsp143I	GATC	4 cut(s)	102, 262, 426, 582
BspANI	GGCC	1 cut(s)	491
BspLI	GGNNCC	3 cut(s)	207, 282, 428
BspPI	GGATC	2 cut(s)	421, 434
BspT107I	GGYRCC	1 cut(s)	280
BsrGI	TGTACA	1 cut(s)	609
BsrI	ACTGG	2 cut(s)	357, 878
BssMI	GATC	4 cut(s)	102, 262, 426, 582
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	4 cut(s)	20, 145, 835, 960
BstAUI	TGTACA	1 cut(s)	609
BstDEI	CTNAG	2 cut(s)	11, 715
BstKTI	GATC	4 cut(s)	105, 265, 429, 585
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	4 cut(s)	102, 262, 426, 582
BstMWI	GCNNNNNNNGC	1 cut(s)	883
BstNI	CCWGG	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	724
BstV2I	GAAGAC	3 cut(s)	252, 359, 716
BstX2I	RGATCY	2 cut(s)	102, 426
BstYI	RGATCY	2 cut(s)	102, 426
BsuRI	GGCC	1 cut(s)	491
BtsIMutI	CAGTG	2 cut(s)	8, 364
Cfr13I	GGNCC	1 cut(s)	604
CseI	GACGC	1 cut(s)	829
Csp6I	GTAC	4 cut(s)	170, 281, 442, 610
CviAII	CATG	4 cut(s)	406, 455, 789, 973
CviJI	RGCY	8 cut(s)	161, 208, 491, 645, 697, 719, 760, 983
CviKI_1	RGCY	8 cut(s)	161, 208, 491, 645, 697, 719, 760, 983
CviQI	GTAC	4 cut(s)	170, 281, 442, 610
DdeI	CTNAG	2 cut(s)	11, 715
DpnI	GATC	4 cut(s)	104, 264, 428, 584
DpnII	GATC	4 cut(s)	102, 262, 426, 582
Eco47I	GGWCC	1 cut(s)	604
EcoO109I	RGGNCCY	1 cut(s)	604
EcoRII	CCWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	888
FaeI	CATG	4 cut(s)	409, 458, 792, 976
FatI	CATG	4 cut(s)	405, 454, 788, 972
FauNDI	CATATG	1 cut(s)	525
FbaI	TGATCA	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	22
FspBI	CTAG	1 cut(s)	749
HaeIII	GGCC	1 cut(s)	491
HgaI	GACGC	1 cut(s)	829
Hin1II	CATG	4 cut(s)	409, 458, 792, 976
HinfI	GANTC	3 cut(s)	409, 512, 769
HphI	GGTGA	2 cut(s)	293, 766
Hpy166II	GTNNAC	5 cut(s)	23, 172, 444, 612, 963
Hpy188I	TCNGA	3 cut(s)	276, 774, 891
Hpy188III	TCNNGA	5 cut(s)	77, 106, 749, 784, 920
Hpy8I	GTNNAC	5 cut(s)	23, 172, 444, 612, 963
HpyAV	CCTTC	5 cut(s)	271, 412, 530, 680, 926
HpyCH4III	ACNGT	4 cut(s)	20, 145, 835, 960
HpyCH4V	TGCA	1 cut(s)	886
HpyF10VI	GCNNNNNNNGC	1 cut(s)	883
HpyF3I	CTNAG	2 cut(s)	11, 715
Hsp92II	CATG	4 cut(s)	409, 458, 792, 976
KpnI	GGTACC	1 cut(s)	284
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	4 cut(s)	102, 262, 426, 582
LmnI	GCTCC	1 cut(s)	205
LweI	GCATC	1 cut(s)	895
MaeI	CTAG	1 cut(s)	749
MaeIII	GTNAC	3 cut(s)	139, 817, 941
MalI	GATC	4 cut(s)	104, 264, 428, 584
MboI	GATC	4 cut(s)	102, 262, 426, 582
MflI	RGATCY	2 cut(s)	102, 426
MluCI	AATT	8 cut(s)	88, 134, 187, 307, 555, 590, 690, 739
MnlI	CCTC	6 cut(s)	37, 219, 415, 502, 745, 835
Mph1103I	ATGCAT	1 cut(s)	888
MroXI	GAANNNNTTC	1 cut(s)	187
MseI	TTAA	5 cut(s)	390, 498, 554, 600, 846
MslI	CAYNNNNRTG	1 cut(s)	977
MspR9I	CCNGG	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	883
NdeI	CATATG	1 cut(s)	525
NdeII	GATC	4 cut(s)	102, 262, 426, 582
NlaIII	CATG	4 cut(s)	409, 458, 792, 976
NlaIV	GGNNCC	3 cut(s)	207, 282, 428
NmuCI	GTSAC	2 cut(s)	139, 817
NsiI	ATGCAT	1 cut(s)	888
PdmI	GAANNNNTTC	1 cut(s)	187
PfeI	GAWTC	3 cut(s)	409, 512, 769
PfoI	TCCNGGA	1 cut(s)	201
PpuMI	RGGWCCY	1 cut(s)	604
PshBI	ATTAAT	1 cut(s)	390
Psp5II	RGGWCCY	1 cut(s)	604
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	3 cut(s)	207, 282, 428
PspPI	GGNCC	1 cut(s)	604
PspPPI	RGGWCCY	1 cut(s)	604
PsuI	RGATCY	2 cut(s)	102, 426
RsaI	GTAC	4 cut(s)	171, 282, 443, 611
RsaNI	GTAC	4 cut(s)	170, 281, 442, 610
RseI	CAYNNNNRTG	1 cut(s)	977
SaqAI	TTAA	5 cut(s)	390, 498, 554, 600, 846
Sau3AI	GATC	4 cut(s)	102, 262, 426, 582
Sau96I	GGNCC	1 cut(s)	604
ScrFI	CCNGG	1 cut(s)	203
SfaNI	GCATC	1 cut(s)	895
SfcI	CTRYAG	1 cut(s)	724
SinI	GGWCC	1 cut(s)	604
SmiMI	CAYNNNNRTG	1 cut(s)	977
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	8 cut(s)	88, 134, 187, 307, 555, 590, 690, 739
SspMI	CTAG	1 cut(s)	749
StyD4I	CCNGG	1 cut(s)	201
TaaI	ACNGT	4 cut(s)	20, 145, 835, 960
TaqI	TCGA	1 cut(s)	827
TasI	AATT	8 cut(s)	88, 134, 187, 307, 555, 590, 690, 739
TatI	WGTACW	3 cut(s)	169, 441, 609
TfiI	GAWTC	3 cut(s)	409, 512, 769
Tru1I	TTAA	5 cut(s)	390, 498, 554, 600, 846
Tru9I	TTAA	5 cut(s)	390, 498, 554, 600, 846
TscAI	CASTG	2 cut(s)	15, 364
TseFI	GTSAC	2 cut(s)	139, 817
Tsp45I	GTSAC	2 cut(s)	139, 817
TspDTI	ATGAA	6 cut(s)	60, 335, 443, 494, 512, 699
TspGWI	ACGGA	1 cut(s)	608
TspRI	CASTG	2 cut(s)	15, 364
VpaK11BI	GGWCC	1 cut(s)	604
VspI	ATTAAT	1 cut(s)	390
XapI	RAATTY	3 cut(s)	88, 134, 739
XbaI	TCTAGA	1 cut(s)	748
XcmI	CCANNNNNNNNNTGG	1 cut(s)	970
XmiI	GTMKAC	1 cut(s)	22
XmnI	GAANNNNTTC	1 cut(s)	187
XspI	CTAG	1 cut(s)	749
Zsp2I	ATGCAT	1 cut(s)	888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.