Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005187

Physical Location & Seq

Genomic Coordinates Reverse (-)

2992488 .. 2995258

Gene Structure 2771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G042000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCAGCCAGCAGTAGTCGGATTGCAACAGTACTTTCTTTTACTCAACACCACCAGTCCAGTTCAAGCCAAGAAGAAGAGATTAATATTTTTTTGAAGATTATGAGAACTGTGGCCTTAACGGTCAATAGATCTGAGACGATAAAAGATCTTAAAGCACTGTTATGTGAGAAGTATGGATTTCCAGAACATCATCAGGAGCTCTTCTTGGGTGGTGATATGCTCGTGGACTGCCAAAGTCTAGTTGACTGTGGAGTTCAGAGGGACTCCACTGTTCATCTTGTTCTCCAGAATACTGTCGGGATCAAATTATTTGTCAAACTACCATCAAGTCAGCGCACCATTGAGATTGAAGCAAAAGCTCATGACACCATCCGAAACATCAAGGCCATGATTCAGGCCAAGAAGATGATTCCATCGGATCAGTTTACTCTTTTATATGGTGGAGAATCACTTGAAGAGGACAGCACTCTGACCTCATTAGGTATCAATAACATGTCAACCCTGCAAATGATTTCTGCTCCTAAAGATGTCCTTTCAATATCTGTGAAATCACCATCAGGTGAGACTGTTAAACTCAAGGTTAGAGCCTTGTTCACCGTCAATGATGTCAAAAACATAGTTGGGAACACTTTAGGTATCTCAGTCAGTGATCAGAATCTGATCTATTCCGGAAATCAGCTTGAGGACCTCAAGACATTGGCTTTTTATGACATCAAAGATAAATATGTATTGGAGATGTCACATCCTTTGTTTCAGATATTTGTTAAAGTTTTTGATGGCAGAACCCTAACTATTTATGTGAAGCAGTCTGATGTTGTTGAAGATGTGAAGGTCAAGGTTTTCCGCAAGCTTGAAGTGTCTATGAAGCCTTATTATTATTGTAGGCTTTTGTTTGGTGGGAAATTTCTTATTAATGGTCGAGATCTAGCAAGCTACAACATACAGAAGGACTCCACCCTTAGTTTGGTTCTGTCAACAAACGTTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0042802

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

331

Amino Acids

36.95

Weight (kDa)

7.66

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005187)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03990 FvH4_4g03992
malus_domestica	MD16G1221600.v1.1
prunus_persica	Prupe.1G041900_v2.0.a1 Prupe.1G042000_v2.0.a1
pyrus_communis	pycom13g18970
rosa_chinensis	RchiOBHm_Chr4g0394221 RchiOBHm_Chr4g0394231 RchiOBHm_Chr4g0394241
rosa_laevigata	RLG00000009712
rosa_multiflora	Rmu_co7959593.1_g000001 Rmu_co8171576.1_g000001 Rmu_sc0000295.1_g000005 Rmu_sc0007246.1_g000006 Rmu_sc0007246.1_g000007 Rmu_sc0024069.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339280 Rroxscaffold_5G00339290
rosa_samantha	Rh4AG050900 Rh4AG051000 Rh4BG047800 Rh4BG047900 Rh4BG048000 Rh4CG054500 Rh4CG054600 Rh4CG054700 Rh4DG047500 Rh4DG047700
rosa_wichuraiana	Rw4G004050 Rw4G004060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	671
AciI	CCGC	1 cut(s)	847
AclI	AACGTT	1 cut(s)	984
AclWI	GGATC	2 cut(s)	311, 429
AcsI	RAATTY	1 cut(s)	905
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	967
AflIII	ACRYGT	1 cut(s)	495
AgsI	TTSAA	7 cut(s)	66, 97, 353, 458, 540, 824, 857
AluBI	AGCT	5 cut(s)	202, 362, 682, 853, 936
AluI	AGCT	5 cut(s)	202, 362, 682, 853, 936
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	2 cut(s)	131, 560
AlwI	GGATC	2 cut(s)	311, 429
AlwNI	CAGNNNCTG	1 cut(s)	661
Aor13HI	TCCGGA	1 cut(s)	671
AoxI	GGCC	3 cut(s)	114, 387, 399
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	905
ArsI	GACNNNNNNTTYG	2 cut(s)	300, 332
AseI	ATTAAT	2 cut(s)	84, 915
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	688
AsuHPI	GGTGA	4 cut(s)	227, 546, 575, 589
AvaII	GGWCC	1 cut(s)	688
BanII	GRGCYC	1 cut(s)	204
BauI	CACGAG	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	5 cut(s)	334, 380, 424, 565, 773
BclI	TGATCA	1 cut(s)	652
BcoDI	GTCTC	2 cut(s)	131, 560
BfaI	CTAG	3 cut(s)	242, 929, 991
BglII	AGATCT	3 cut(s)	131, 148, 925
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmcAI	AGTACT	1 cut(s)	33
Bme18I	GGWCC	1 cut(s)	688
BmgT120I	GGNCC	1 cut(s)	688
BpmI	CTGGAG	1 cut(s)	272
BpuEI	CTTGAG	3 cut(s)	563, 677, 704
BsaBI	GATNNNNATC	1 cut(s)	657
BsaWI	WCCGGW	1 cut(s)	671
Bsc4I	CCNNNNNNNGG	1 cut(s)	967
Bse1I	ACTGG	2 cut(s)	55, 60
Bse8I	GATNNNNATC	1 cut(s)	657
BseAI	TCCGGA	1 cut(s)	671
BseGI	GGATG	2 cut(s)	372, 745
BseJI	GATNNNNATC	1 cut(s)	657
BseLI	CCNNNNNNNGG	1 cut(s)	967
BseMII	CTCAG	2 cut(s)	126, 657
BseNI	ACTGG	2 cut(s)	55, 60
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	3 cut(s)	116, 389, 401
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	672
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	967
BsmAI	GTCTC	2 cut(s)	131, 560
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	3 cut(s)	116, 389, 401
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp13I	TCCGGA	1 cut(s)	671
Bsp143I	GATC	7 cut(s)	131, 148, 303, 421, 652, 663, 925
BspACI	CCGC	1 cut(s)	847
BspANI	GGCC	3 cut(s)	116, 389, 401
BspCNI	CTCAG	2 cut(s)	127, 656
BspEI	TCCGGA	1 cut(s)	671
BspHI	TCATGA	1 cut(s)	364
BspPI	GGATC	2 cut(s)	311, 429
BspQI	GCTCTTC	1 cut(s)	209
BsrI	ACTGG	2 cut(s)	55, 60
BssMI	GATC	7 cut(s)	131, 148, 303, 421, 652, 663, 925
BssSI	CACGAG	1 cut(s)	224
Bst2BI	CACGAG	1 cut(s)	224
Bst4CI	ACNGT	9 cut(s)	31, 112, 124, 162, 251, 274, 298, 571, 601
Bst6I	CTCTTC	3 cut(s)	72, 209, 453
BstC8I	GCNNGC	3 cut(s)	10, 851, 934
BstDEI	CTNAG	3 cut(s)	135, 643, 962
BstF5I	GGATG	2 cut(s)	372, 745
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	7 cut(s)	134, 151, 306, 424, 655, 666, 928
BstMAI	GTCTC	2 cut(s)	131, 560
BstMBI	GATC	7 cut(s)	131, 148, 303, 421, 652, 663, 925
BstNSI	RCATGY	1 cut(s)	499
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	3 cut(s)	131, 148, 925
BstYI	RGATCY	3 cut(s)	131, 148, 925
BsuRI	GGCC	3 cut(s)	116, 389, 401
BtsCI	GGATG	2 cut(s)	372, 745
BtsIMutI	CAGTG	3 cut(s)	158, 270, 655
Cac8I	GCNNGC	3 cut(s)	10, 851, 934
CaiI	CAGNNNCTG	1 cut(s)	661
CciI	TCATGA	1 cut(s)	364
CfoI	GCGC	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	688
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	3 cut(s)	365, 391, 496
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	3 cut(s)	135, 643, 962
DpnI	GATC	7 cut(s)	133, 150, 305, 423, 654, 665, 927
DpnII	GATC	7 cut(s)	131, 148, 303, 421, 652, 663, 925
Eam1104I	CTCTTC	3 cut(s)	72, 209, 453
EarI	CTCTTC	3 cut(s)	72, 209, 453
Ecl136II	GAGCTC	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	688
Eco53kI	GAGCTC	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	688
EcoT38I	GRGCYC	1 cut(s)	204
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	3 cut(s)	368, 394, 499
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	1 cut(s)	278
FatI	CATG	3 cut(s)	364, 390, 495
FbaI	TGATCA	1 cut(s)	652
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	2 cut(s)	359, 732
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	3 cut(s)	242, 929, 991
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	3 cut(s)	116, 389, 401
HapII	CCGG	1 cut(s)	672
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	3 cut(s)	368, 394, 499
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HincII	GTYRAC	3 cut(s)	247, 501, 978
HindII	GTYRAC	3 cut(s)	247, 501, 978
HindIII	AAGCTT	1 cut(s)	851
HinfI	GANTC	6 cut(s)	266, 394, 412, 449, 658, 953
HpaII	CCGG	1 cut(s)	672
HphI	GGTGA	4 cut(s)	227, 546, 575, 589
Hpy166II	GTNNAC	6 cut(s)	229, 247, 429, 501, 597, 978
Hpy188III	TCNNGA	8 cut(s)	185, 197, 289, 301, 365, 672, 694, 923
Hpy8I	GTNNAC	6 cut(s)	229, 247, 429, 501, 597, 978
HpyAV	CCTTC	2 cut(s)	826, 943
HpyCH4III	ACNGT	9 cut(s)	31, 112, 124, 162, 251, 274, 298, 571, 601
HpyCH4IV	ACGT	1 cut(s)	984
HpyCH4V	TGCA	2 cut(s)	26, 508
HpyF3I	CTNAG	3 cut(s)	135, 643, 962
HpySE526I	ACGT	1 cut(s)	984
Hsp92II	CATG	3 cut(s)	368, 394, 499
HspAI	GCGC	1 cut(s)	337
Kpn2I	TCCGGA	1 cut(s)	671
Ksp22I	TGATCA	1 cut(s)	652
Kzo9I	GATC	7 cut(s)	131, 148, 303, 421, 652, 663, 925
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	2 cut(s)	199, 526
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	3 cut(s)	242, 929, 991
MaeII	ACGT	1 cut(s)	984
MaeIII	GTNAC	1 cut(s)	741
MalI	GATC	7 cut(s)	133, 150, 305, 423, 654, 665, 927
MboI	GATC	7 cut(s)	131, 148, 303, 421, 652, 663, 925
MboII	GAAGA	7 cut(s)	86, 89, 109, 196, 418, 470, 836
MflI	RGATCY	3 cut(s)	131, 148, 925
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	2 cut(s)	308, 905
MlyI	GAGTC	2 cut(s)	260, 947
MnlI	CCTC	5 cut(s)	255, 454, 487, 679, 701
MroI	TCCGGA	1 cut(s)	671
MseI	TTAA	6 cut(s)	84, 119, 153, 573, 768, 915
MslI	CAYNNNNRTG	1 cut(s)	163
MspI	CCGG	1 cut(s)	672
NdeII	GATC	7 cut(s)	131, 148, 303, 421, 652, 663, 925
NlaIII	CATG	3 cut(s)	368, 394, 499
NmuCI	GTSAC	1 cut(s)	741
NspI	RCATGY	1 cut(s)	499
PagI	TCATGA	1 cut(s)	364
PciI	ACATGT	1 cut(s)	495
PciSI	GCTCTTC	1 cut(s)	209
PfeI	GAWTC	4 cut(s)	394, 412, 449, 658
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	260, 947
PpsI	GAGTC	2 cut(s)	260, 947
PpuMI	RGGWCCY	1 cut(s)	688
PscI	ACATGT	1 cut(s)	495
PshBI	ATTAAT	2 cut(s)	84, 915
Psp124BI	GAGCTC	1 cut(s)	204
Psp1406I	AACGTT	1 cut(s)	984
Psp5II	RGGWCCY	1 cut(s)	688
PspPI	GGNCC	1 cut(s)	688
PspPPI	RGGWCCY	1 cut(s)	688
PstNI	CAGNNNCTG	1 cut(s)	661
PsuI	RGATCY	3 cut(s)	131, 148, 925
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
RseI	CAYNNNNRTG	1 cut(s)	163
SacI	GAGCTC	1 cut(s)	204
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	6 cut(s)	84, 119, 153, 573, 768, 915
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	7 cut(s)	131, 148, 303, 421, 652, 663, 925
Sau96I	GGNCC	1 cut(s)	688
ScaI	AGTACT	1 cut(s)	33
SchI	GAGTC	2 cut(s)	260, 947
SduI	GDGCHC	1 cut(s)	204
SinI	GGWCC	1 cut(s)	688
SmiMI	CAYNNNNRTG	1 cut(s)	163
SmlI	CTYRAG	3 cut(s)	578, 683, 692
SmoI	CTYRAG	3 cut(s)	578, 683, 692
Sse9I	AATT	2 cut(s)	308, 905
SsiI	CCGC	1 cut(s)	847
SspI	AATATT	1 cut(s)	88
SspMI	CTAG	3 cut(s)	242, 929, 991
SstI	GAGCTC	1 cut(s)	204
TaaI	ACNGT	9 cut(s)	31, 112, 124, 162, 251, 274, 298, 571, 601
TaiI	ACGT	1 cut(s)	987
TaqI	TCGA	1 cut(s)	922
TasI	AATT	2 cut(s)	308, 905
TatI	WGTACW	1 cut(s)	31
TfiI	GAWTC	4 cut(s)	394, 412, 449, 658
Tru1I	TTAA	6 cut(s)	84, 119, 153, 573, 768, 915
Tru9I	TTAA	6 cut(s)	84, 119, 153, 573, 768, 915
TscAI	CASTG	3 cut(s)	165, 277, 655
TseFI	GTSAC	1 cut(s)	741
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	741
TspDTI	ATGAA	2 cut(s)	266, 881
TspRI	CASTG	3 cut(s)	165, 277, 655
VpaK11BI	GGWCC	1 cut(s)	688
VspI	ATTAAT	2 cut(s)	84, 915
XapI	RAATTY	1 cut(s)	905
XceI	RCATGY	1 cut(s)	499
XcmI	CCANNNNNNNNNTGG	1 cut(s)	964
XspI	CTAG	3 cut(s)	242, 929, 991
ZrmI	AGTACT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.