Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0005187

Physical Location & Seq

Genomic Coordinates Reverse (-)

10729130 .. 10731435

Gene Structure 2306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG051000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGAAGGGCAGCAGCACTAGCGGTAGTCGGATTGCACCACGTTTTCCCCCTGCTCGAAAATTCCAGTCGAGTTTCACCCAAGATGAAGAGATGTCCTTGAACATTATAGGAACCGTCTTTAAGTTCAAGAGCTCTGCAACCATAAAAGATCTCAAGACAATGTTATGTAACAAGTACGGATTTCCTGAGAATCATCTGGAGTTCTTCTTGGCTGGTCAGCCTCTCTTGGACTTCCAAAGGGTAGTTGACTGTGGATTTCTTGAGTGCGCTGTTGATCTTGTTTTCAAGAATATTGTGGGAATGAAATTAATTGTCAAACTACCATCTAGTACCATTGAGATTGAGGGAAAAGCAGAAGATACCATCCAAAAAGTGAAAGCAATGATTCAGGCTAAGGAGAAGATTCAACCCGACCAATACACACTCGTCTATGATGGAAAGTTCCTTGAGGAGGACATGACACTGGCCTCACTACGTATGAAGAATGAGTCGACTCTTTACATGGTTTCTGCTCCTAAATATATTCTTTCAATATCAGTGAAAGCACCTTCAGGAGAGACTTCTAAGTTCAAGTTTAAACCCTTGTTTAATGTTAGAGATGTCAAAACTATAGTTGAGAGCTATACAGGTTGCTCAGTCAGTGATCACAATCTGATCTATTCCAGAAATGAGCTTGAGGATCTGAAGACATTGGCTTTTTATGACATCGAGGATGAATCAGTATTAGAGGTCTCACCTCGCTCATTGCAGATATTTGTTAAAGTTTGTGATGGCAAAATTATTGCTGTTGAAGTGAAGCAGAGTGATAGTGTCAAAGAACTGAAGAGCAAGATTTTTCGTAAGCTTTATGTGTCGATGATGCCTTCTGATTTCTATAAGCTTGTGTTTCGCTGGGAACAGTTTGATGAAGTTCGGGATCTGGCAAGCTACAACATCCAAAGGGGCAGCAAACTTCGTTTGGTTCTCTCATCATCTGTTATTGTAAGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0008017 GO:0008092 GO:0008150 GO:0008574 GO:0009524 GO:0009987 GO:0010970 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030705 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0047496 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0072384 GO:0099111 GO:0099518 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

330

Amino Acids

37.58

Weight (kDa)

8.59

Isoelectric Point (pI)

46.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	104 - 169	2e-15	Ubiquitin family
Rad60-SLD	PF11976	110 - 166	3.8e-07	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	178 - 244	6.6e-08	Ubiquitin family
ubiquitin	PF00240	251 - 323	1.1e-09	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005187)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03990 FvH4_4g03992
malus_domestica	MD16G1221600.v1.1
prunus_persica	Prupe.1G041900_v2.0.a1 Prupe.1G042000_v2.0.a1
pyrus_communis	pycom13g18970
rosa_chinensis	RchiOBHm_Chr4g0394221 RchiOBHm_Chr4g0394231 RchiOBHm_Chr4g0394241
rosa_laevigata	RLG00000009712
rosa_multiflora	Rmu_co7959593.1_g000001 Rmu_co8171576.1_g000001 Rmu_sc0000295.1_g000005 Rmu_sc0007246.1_g000006 Rmu_sc0007246.1_g000007 Rmu_sc0024069.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339280 Rroxscaffold_5G00339290
rosa_samantha	Rh4AG050900 Rh4AG051000 Rh4BG047800 Rh4BG047900 Rh4BG048000 Rh4CG054500 Rh4CG054600 Rh4CG054700 Rh4DG047500 Rh4DG047700
rosa_wichuraiana	Rw4G004050 Rw4G004060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	491
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	2 cut(s)	687, 924
AcsI	RAATTY	1 cut(s)	59
AcuI	CTGAAG	3 cut(s)	534, 704, 842
AfaI	GTAC	2 cut(s)	176, 331
AfiI	CCNNNNNNNGG	1 cut(s)	451
AgsI	TTSAA	7 cut(s)	100, 127, 286, 407, 531, 571, 791
AluBI	AGCT	6 cut(s)	132, 621, 673, 844, 880, 927
AluI	AGCT	6 cut(s)	132, 621, 673, 844, 880, 927
Alw21I	GWGCWC	1 cut(s)	134
Alw26I	GTCTC	2 cut(s)	551, 736
AlwI	GGATC	2 cut(s)	687, 924
AoxI	GGCC	1 cut(s)	465
ApeKI	GCWGC	3 cut(s)	9, 12, 945
ApoI	RAATTY	1 cut(s)	59
AseI	ATTAAT	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	269
AsuHPI	GGTGA	2 cut(s)	67, 726
BanII	GRGCYC	1 cut(s)	134
BbsI	GAAGAC	1 cut(s)	692
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	21, 24, 957
BccI	CCATC	4 cut(s)	331, 371, 428, 764
BclI	TGATCA	1 cut(s)	643
BcoDI	GTCTC	2 cut(s)	551, 736
BfaI	CTAG	2 cut(s)	18, 327
BfmI	CTRYAG	1 cut(s)	609
BglII	AGATCT	1 cut(s)	148
BisI	GCNGC	3 cut(s)	10, 13, 946
BlsI	GCNGC	3 cut(s)	11, 14, 947
BmiI	GGNNCC	1 cut(s)	112
BmsI	GCATC	1 cut(s)	849
BpiI	GAAGAC	1 cut(s)	692
BpmI	CTGGAG	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	4 cut(s)	137, 281, 467, 695
BsaAI	YACGTR	1 cut(s)	476
BsaBI	GATNNNNATC	1 cut(s)	648
BsaI	GGTCTC	1 cut(s)	736
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse1I	ACTGG	2 cut(s)	64, 468
Bse3DI	GCAATG	2 cut(s)	387, 743
Bse8I	GATNNNNATC	1 cut(s)	648
BseGI	GGATG	3 cut(s)	363, 718, 933
BseJI	GATNNNNATC	1 cut(s)	648
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseMI	GCAATG	2 cut(s)	387, 743
BseMII	CTCAG	2 cut(s)	177, 648
BseNI	ACTGG	2 cut(s)	64, 468
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	3 cut(s)	21, 24, 957
BseYI	CCCAGC	1 cut(s)	891
BshFI	GGCC	1 cut(s)	467
BsiHKAI	GWGCWC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	451
BsmAI	GTCTC	2 cut(s)	551, 736
BsnI	GGCC	1 cut(s)	467
Bso31I	GGTCTC	1 cut(s)	736
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	6 cut(s)	148, 274, 643, 654, 679, 916
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	467
BspCNI	CTCAG	2 cut(s)	178, 647
BspLI	GGNNCC	1 cut(s)	112
BspPI	GGATC	2 cut(s)	687, 924
BspQI	GCTCTTC	1 cut(s)	818
BspTNI	GGTCTC	1 cut(s)	736
BsrDI	GCAATG	2 cut(s)	387, 743
BsrI	ACTGG	2 cut(s)	64, 468
BssMI	GATC	6 cut(s)	148, 274, 643, 654, 679, 916
Bst4CI	ACNGT	3 cut(s)	115, 251, 900
Bst6I	CTCTTC	2 cut(s)	81, 818
BstBAI	YACGTR	1 cut(s)	476
BstC8I	GCNNGC	1 cut(s)	925
BstDEI	CTNAG	4 cut(s)	186, 393, 564, 634
BstENI	CCTNNNNNAGG	1 cut(s)	449
BstF5I	GGATG	3 cut(s)	363, 718, 933
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	6 cut(s)	151, 277, 646, 657, 682, 919
BstMAI	GTCTC	2 cut(s)	551, 736
BstMBI	GATC	6 cut(s)	148, 274, 643, 654, 679, 916
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstSFI	CTRYAG	1 cut(s)	609
BstSNI	TACGTA	1 cut(s)	476
BstV1I	GCAGC	3 cut(s)	21, 24, 957
BstV2I	GAAGAC	1 cut(s)	692
BstX2I	RGATCY	3 cut(s)	148, 679, 916
BstYI	RGATCY	3 cut(s)	148, 679, 916
BsuRI	GGCC	1 cut(s)	467
BtsCI	GGATG	3 cut(s)	363, 718, 933
BtsIMutI	CAGTG	3 cut(s)	461, 543, 646
Cac8I	GCNNGC	1 cut(s)	925
CfoI	GCGC	1 cut(s)	269
Csp6I	GTAC	2 cut(s)	175, 330
CviAII	CATG	2 cut(s)	457, 502
CviQI	GTAC	2 cut(s)	175, 330
DdeI	CTNAG	4 cut(s)	186, 393, 564, 634
DpnI	GATC	6 cut(s)	150, 276, 645, 656, 681, 918
DpnII	GATC	6 cut(s)	148, 274, 643, 654, 679, 916
DraI	TTTAAA	1 cut(s)	577
Eam1104I	CTCTTC	2 cut(s)	81, 818
EarI	CTCTTC	2 cut(s)	81, 818
Ecl136II	GAGCTC	1 cut(s)	132
Eco105I	TACGTA	1 cut(s)	476
Eco24I	GRGCYC	1 cut(s)	134
Eco31I	GGTCTC	1 cut(s)	736
Eco53kI	GAGCTC	1 cut(s)	132
Eco57I	CTGAAG	3 cut(s)	534, 704, 842
EcoICRI	GAGCTC	1 cut(s)	132
EcoNI	CCTNNNNNAGG	1 cut(s)	449
EcoT38I	GRGCYC	1 cut(s)	134
FaeI	CATG	2 cut(s)	460, 505
FatI	CATG	2 cut(s)	456, 501
FbaI	TGATCA	1 cut(s)	643
FblI	GTMKAC	1 cut(s)	491
Fnu4HI	GCNGC	3 cut(s)	10, 13, 946
FokI	GGATG	3 cut(s)	350, 725, 920
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	3 cut(s)	10, 13, 946
FspBI	CTAG	2 cut(s)	18, 327
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	3 cut(s)	10, 13, 946
GsaI	CCCAGC	1 cut(s)	895
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	467
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	2 cut(s)	460, 505
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HincII	GTYRAC	2 cut(s)	247, 492
HindII	GTYRAC	2 cut(s)	247, 492
HindIII	AAGCTT	2 cut(s)	842, 878
HinfI	GANTC	6 cut(s)	190, 385, 403, 488, 493, 716
HphI	GGTGA	2 cut(s)	67, 726
Hpy166II	GTNNAC	2 cut(s)	247, 492
Hpy188I	TCNGA	4 cut(s)	30, 654, 684, 868
Hpy188III	TCNNGA	9 cut(s)	127, 154, 185, 197, 260, 286, 552, 663, 914
Hpy8I	GTNNAC	2 cut(s)	247, 492
HpyAV	CCTTC	2 cut(s)	558, 873
HpyCH4III	ACNGT	3 cut(s)	115, 251, 900
HpyCH4IV	ACGT	2 cut(s)	40, 475
HpyCH4V	TGCA	3 cut(s)	35, 137, 748
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	4 cut(s)	186, 393, 564, 634
HpySE526I	ACGT	2 cut(s)	40, 475
Hsp92II	CATG	2 cut(s)	460, 505
HspAI	GCGC	1 cut(s)	267
Ksp22I	TGATCA	1 cut(s)	643
Kzo9I	GATC	6 cut(s)	148, 274, 643, 654, 679, 916
LguI	GCTCTTC	1 cut(s)	818
LmnI	GCTCC	1 cut(s)	517
Lsp1109I	GCAGC	3 cut(s)	21, 24, 957
LweI	GCATC	1 cut(s)	849
MaeI	CTAG	2 cut(s)	18, 327
MaeII	ACGT	2 cut(s)	40, 475
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	6 cut(s)	150, 276, 645, 656, 681, 918
MboI	GATC	6 cut(s)	148, 274, 643, 654, 679, 916
MboII	GAAGA	7 cut(s)	98, 196, 368, 412, 493, 697, 835
MflI	RGATCY	3 cut(s)	148, 679, 916
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	4 cut(s)	59, 305, 309, 777
MlyI	GAGTC	2 cut(s)	487, 497
MmeI	TCCRAC	1 cut(s)	8
MnlI	CCTC	9 cut(s)	231, 337, 442, 445, 478, 670, 703, 721, 747
MseI	TTAA	6 cut(s)	120, 308, 576, 588, 759, 991
MssI	GTTTAAAC	1 cut(s)	577
MwoI	GCNNNNNNNGC	1 cut(s)	18
NdeII	GATC	6 cut(s)	148, 274, 643, 654, 679, 916
NlaIII	CATG	2 cut(s)	460, 505
NlaIV	GGNNCC	1 cut(s)	112
PciSI	GCTCTTC	1 cut(s)	818
PfeI	GAWTC	4 cut(s)	190, 385, 403, 716
PkrI	GCNGC	3 cut(s)	11, 14, 947
PleI	GAGTC	2 cut(s)	487, 496
PmeI	GTTTAAAC	1 cut(s)	577
PpsI	GAGTC	2 cut(s)	487, 496
Ppu21I	YACGTR	1 cut(s)	476
PshBI	ATTAAT	1 cut(s)	308
Psp124BI	GAGCTC	1 cut(s)	134
PspFI	CCCAGC	1 cut(s)	891
PspN4I	GGNNCC	1 cut(s)	112
PsuI	RGATCY	3 cut(s)	148, 679, 916
RsaI	GTAC	2 cut(s)	176, 331
RsaNI	GTAC	2 cut(s)	175, 330
SacI	GAGCTC	1 cut(s)	134
SalI	GTCGAC	1 cut(s)	490
SapI	GCTCTTC	1 cut(s)	818
SaqAI	TTAA	6 cut(s)	120, 308, 576, 588, 759, 991
SatI	GCNGC	3 cut(s)	10, 13, 946
Sau3AI	GATC	6 cut(s)	148, 274, 643, 654, 679, 916
SchI	GAGTC	2 cut(s)	487, 497
SduI	GDGCHC	1 cut(s)	134
SfaNI	GCATC	1 cut(s)	849
SfcI	CTRYAG	1 cut(s)	609
SmlI	CTYRAG	4 cut(s)	152, 260, 446, 674
SmoI	CTYRAG	4 cut(s)	152, 260, 446, 674
SnaBI	TACGTA	1 cut(s)	476
Sse9I	AATT	4 cut(s)	59, 305, 309, 777
SsiI	CCGC	1 cut(s)	21
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	2 cut(s)	18, 327
SstI	GAGCTC	1 cut(s)	134
TaaI	ACNGT	3 cut(s)	115, 251, 900
TaiI	ACGT	2 cut(s)	43, 478
TaqI	TCGA	5 cut(s)	55, 68, 491, 708, 854
TasI	AATT	4 cut(s)	59, 305, 309, 777
TfiI	GAWTC	4 cut(s)	190, 385, 403, 716
Tru1I	TTAA	6 cut(s)	120, 308, 576, 588, 759, 991
Tru9I	TTAA	6 cut(s)	120, 308, 576, 588, 759, 991
TscAI	CASTG	3 cut(s)	468, 543, 646
TseI	GCWGC	3 cut(s)	9, 12, 945
TspDTI	ATGAA	6 cut(s)	17, 99, 317, 494, 729, 921
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	3 cut(s)	468, 543, 646
VspI	ATTAAT	1 cut(s)	308
XagI	CCTNNNNNAGG	1 cut(s)	449
XapI	RAATTY	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	491
XspI	CTAG	2 cut(s)	18, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.