Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005187

Physical Location & Seq

Genomic Coordinates Reverse (-)

9831923 .. 9834003

Gene Structure 2081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36675

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAAGGGCAGCAGCACTAGCGGTAGTCGGATTGCTCGAAAATTCCAGTCGAGTTCCACCCAAGATGAAGAGATGTCCTTGAACATTATAGGAACAGTCTTTAAGCTCAAGAGCTCTGCAACCATAAAAGATCTCAAGACAATGTTATGTAACAAGTATGGATTTCCTGAGAATCATCTGGAGTTCTTCTTGGCTGGTCAGCCTCTCTTGGACTTCCAAAGGGTAGTTGACTGTGGATTTCTTGAGTGCGCTGTTGATCTTGTTTTCAAGAATATTGTGGGAATGAAATTATTTGTCAAACTACCATCTAGTACCATTGAGATTGAGGGAAAAGCAGAAGATACCATCCAAAAAGTGAAAGCAATGATTCAGGCTAAGGAGAAGATTCAACCCGACCAATACACACTCGTCTATGATGGAAAGTTCCTTGAGGAGGACATGACACTGGCCTCACTTCGTATGAAGAATGAGTCAACTCTTCATATTATTTTTAATCCAAGAGATGTGATGTCAGTTTTTGTGAAAACACCAGGTGGGAAGATTGTGGAATTTGAAGTTAAGGTCTTGTACACTGTCAGCGATGTCAAGCAGATTGTTGAGAGCTTTATAGGATGTTCTGTTGTTCATTATAGTTTGTTTTATGAAGGAAATGAGCTGCAAGATTTCAAGACCTTGGCTTTCTACAACATTAAAGAAAATTCCACTCTAGAGGTGAAGCCTTCTGGGATTCAGATATTTGTCAAGACATGGAGTGGAAAAACCATTACACTTGATGTGACACGATCAAATACTGTAAGAGAGGTGAAGGAGAAGATATTTTGTAAGGTTAGAGTGCCAGTTATTCGTCAGCGTATTGTATTTTCTGGAAAACGCCTTGAAGATAAATGCTCTCTTGCAAGTTACAACATTCAGAAACAGTCGACTCTCTACATGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0008017 GO:0008092 GO:0008150 GO:0008574 GO:0009524 GO:0009987 GO:0010970 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030705 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0047496 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0072384 GO:0099111 GO:0099518 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

312

Amino Acids

35.44

Weight (kDa)

8.93

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	97 - 166	9.2e-17	Ubiquitin family
Rad60-SLD	PF11976	104 - 163	3.6e-08	Ubiquitin-2 like Rad60 SUMO-like
Rad60-SLD	PF11976	170 - 238	2.3e-06	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	172 - 238	3.3e-12	Ubiquitin family
Rad60-SLD	PF11976	243 - 309	3.1e-08	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	245 - 312	8e-21	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005187)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03990 FvH4_4g03992
malus_domestica	MD16G1221600.v1.1
prunus_persica	Prupe.1G041900_v2.0.a1 Prupe.1G042000_v2.0.a1
pyrus_communis	pycom13g18970
rosa_chinensis	RchiOBHm_Chr4g0394221 RchiOBHm_Chr4g0394231 RchiOBHm_Chr4g0394241
rosa_laevigata	RLG00000009712
rosa_multiflora	Rmu_co7959593.1_g000001 Rmu_co8171576.1_g000001 Rmu_sc0000295.1_g000005 Rmu_sc0007246.1_g000006 Rmu_sc0007246.1_g000007 Rmu_sc0024069.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339280 Rroxscaffold_5G00339290
rosa_samantha	Rh4AG050900 Rh4AG051000 Rh4BG047800 Rh4BG047900 Rh4BG048000 Rh4CG054500 Rh4CG054600 Rh4CG054700 Rh4DG047500 Rh4DG047700
rosa_wichuraiana	Rw4G004050 Rw4G004060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	920
AciI	CCGC	1 cut(s)	21
AcsI	RAATTY	3 cut(s)	41, 548, 697
AdeI	CACNNNGTG	1 cut(s)	533
AfaI	GTAC	2 cut(s)	313, 569
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	6 cut(s)	82, 268, 389, 554, 667, 878
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	4 cut(s)	106, 114, 603, 655
AluI	AGCT	4 cut(s)	106, 114, 603, 655
Alw21I	GWGCWC	1 cut(s)	116
AoxI	GGCC	1 cut(s)	447
ApeKI	GCWGC	3 cut(s)	9, 12, 655
ApoI	RAATTY	3 cut(s)	41, 548, 697
AspLEI	GCGC	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	724, 814
BanII	GRGCYC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	3 cut(s)	21, 24, 642
BccI	CCATC	3 cut(s)	313, 353, 410
BciT130I	CCWGG	1 cut(s)	531
BfaI	CTAG	3 cut(s)	18, 309, 707
BglII	AGATCT	1 cut(s)	130
BisI	GCNGC	3 cut(s)	10, 13, 656
BlsI	GCNGC	3 cut(s)	11, 14, 657
Bme1390I	CCNGG	1 cut(s)	531
BmrFI	CCNGG	1 cut(s)	531
BpmI	CTGGAG	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	4 cut(s)	92, 119, 263, 449
BsaJI	CCNNGG	1 cut(s)	672
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	3 cut(s)	46, 450, 836
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	1 cut(s)	672
BseGI	GGATG	2 cut(s)	345, 617
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	3 cut(s)	46, 450, 836
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	3 cut(s)	21, 24, 642
BshFI	GGCC	1 cut(s)	449
BsiHKAI	GWGCWC	1 cut(s)	116
BslI	CCNNNNNNNGG	1 cut(s)	433
BsnI	GGCC	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp1407I	TGTACA	1 cut(s)	567
Bsp143I	GATC	3 cut(s)	130, 256, 782
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	449
BspCNI	CTCAG	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	369
BsrGI	TGTACA	1 cut(s)	567
BsrI	ACTGG	3 cut(s)	46, 450, 836
BssECI	CCNNGG	1 cut(s)	672
BssMI	GATC	3 cut(s)	130, 256, 782
BssT1I	CCWWGG	1 cut(s)	672
Bst2UI	CCWGG	1 cut(s)	531
Bst4CI	ACNGT	5 cut(s)	97, 233, 574, 793, 918
Bst6I	CTCTTC	2 cut(s)	63, 483
BstAUI	TGTACA	1 cut(s)	567
BstDEI	CTNAG	2 cut(s)	168, 375
BstENI	CCTNNNNNAGG	1 cut(s)	431
BstF5I	GGATG	2 cut(s)	345, 617
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	3 cut(s)	133, 259, 785
BstMBI	GATC	3 cut(s)	130, 256, 782
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstNI	CCWGG	1 cut(s)	531
BstSCI	CCNGG	1 cut(s)	529
BstV1I	GCAGC	3 cut(s)	21, 24, 642
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	449
BtgZI	GCGATG	1 cut(s)	594
BtsCI	GGATG	2 cut(s)	345, 617
BtsIMutI	CAGTG	2 cut(s)	443, 570
CfoI	GCGC	1 cut(s)	251
CsiI	ACCWGGT	1 cut(s)	529
Csp6I	GTAC	2 cut(s)	312, 568
CviAII	CATG	3 cut(s)	439, 747, 931
CviQI	GTAC	2 cut(s)	312, 568
DdeI	CTNAG	2 cut(s)	168, 375
DpnI	GATC	3 cut(s)	132, 258, 784
DpnII	GATC	3 cut(s)	130, 256, 782
DraIII	CACNNNGTG	1 cut(s)	533
Eam1104I	CTCTTC	2 cut(s)	63, 483
EarI	CTCTTC	2 cut(s)	63, 483
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	672
Eco24I	GRGCYC	1 cut(s)	116
Eco53kI	GAGCTC	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	114
EcoNI	CCTNNNNNAGG	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	672
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	1 cut(s)	672
FaeI	CATG	3 cut(s)	442, 750, 934
FatI	CATG	3 cut(s)	438, 746, 930
FblI	GTMKAC	1 cut(s)	920
Fnu4HI	GCNGC	3 cut(s)	10, 13, 656
FokI	GGATG	2 cut(s)	332, 624
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	3 cut(s)	10, 13, 656
FspBI	CTAG	3 cut(s)	18, 309, 707
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	3 cut(s)	10, 13, 656
GsuI	CTGGAG	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	449
HhaI	GCGC	1 cut(s)	251
Hin1II	CATG	3 cut(s)	442, 750, 934
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HincII	GTYRAC	3 cut(s)	229, 474, 921
HindII	GTYRAC	3 cut(s)	229, 474, 921
HinfI	GANTC	6 cut(s)	172, 367, 385, 470, 727, 922
HphI	GGTGA	2 cut(s)	724, 814
Hpy166II	GTNNAC	4 cut(s)	229, 474, 570, 921
Hpy188I	TCNGA	3 cut(s)	30, 732, 912
Hpy8I	GTNNAC	4 cut(s)	229, 474, 570, 921
HpyAV	CCTTC	3 cut(s)	638, 729, 799
HpyCH4III	ACNGT	5 cut(s)	97, 233, 574, 793, 918
HpyCH4V	TGCA	3 cut(s)	119, 658, 896
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	2 cut(s)	168, 375
Hsp92II	CATG	3 cut(s)	442, 750, 934
HspAI	GCGC	1 cut(s)	249
Kzo9I	GATC	3 cut(s)	130, 256, 782
Lsp1109I	GCAGC	3 cut(s)	21, 24, 642
MabI	ACCWGGT	1 cut(s)	529
MaeI	CTAG	3 cut(s)	18, 309, 707
MaeIII	GTNAC	3 cut(s)	149, 775, 899
MalI	GATC	3 cut(s)	132, 258, 784
MboI	GATC	3 cut(s)	130, 256, 782
MboII	GAAGA	9 cut(s)	80, 178, 350, 394, 470, 475, 550, 823, 890
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	4 cut(s)	41, 287, 548, 697
MlyI	GAGTC	2 cut(s)	479, 916
MmeI	TCCRAC	1 cut(s)	8
MnlI	CCTC	7 cut(s)	213, 319, 424, 427, 460, 703, 793
MseI	TTAA	4 cut(s)	102, 492, 558, 690
MspR9I	CCNGG	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	531
MwoI	GCNNNNNNNGC	1 cut(s)	18
NdeII	GATC	3 cut(s)	130, 256, 782
NlaIII	CATG	3 cut(s)	442, 750, 934
NmuCI	GTSAC	1 cut(s)	775
PcsI	WCGNNNNNNNCGW	1 cut(s)	34
PfeI	GAWTC	4 cut(s)	172, 367, 385, 727
PkrI	GCNGC	3 cut(s)	11, 14, 657
PleI	GAGTC	2 cut(s)	478, 916
PpsI	GAGTC	2 cut(s)	478, 916
Psp124BI	GAGCTC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	529
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	2 cut(s)	313, 569
RsaNI	GTAC	2 cut(s)	312, 568
SacI	GAGCTC	1 cut(s)	116
SalI	GTCGAC	1 cut(s)	919
SaqAI	TTAA	4 cut(s)	102, 492, 558, 690
SatI	GCNGC	3 cut(s)	10, 13, 656
Sau3AI	GATC	3 cut(s)	130, 256, 782
SchI	GAGTC	2 cut(s)	479, 916
ScrFI	CCNGG	1 cut(s)	531
SduI	GDGCHC	1 cut(s)	116
SexAI	ACCWGGT	1 cut(s)	529
SmlI	CTYRAG	4 cut(s)	107, 134, 242, 428
SmoI	CTYRAG	4 cut(s)	107, 134, 242, 428
Sse9I	AATT	4 cut(s)	41, 287, 548, 697
SsiI	CCGC	1 cut(s)	21
SspI	AATATT	1 cut(s)	274
SspMI	CTAG	3 cut(s)	18, 309, 707
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	1 cut(s)	529
StyI	CCWWGG	1 cut(s)	672
TaaI	ACNGT	5 cut(s)	97, 233, 574, 793, 918
TaqI	TCGA	3 cut(s)	37, 50, 920
TasI	AATT	4 cut(s)	41, 287, 548, 697
TatI	WGTACW	1 cut(s)	567
TfiI	GAWTC	4 cut(s)	172, 367, 385, 727
Tru1I	TTAA	4 cut(s)	102, 492, 558, 690
Tru9I	TTAA	4 cut(s)	102, 492, 558, 690
TscAI	CASTG	2 cut(s)	450, 577
TseFI	GTSAC	1 cut(s)	775
TseI	GCWGC	3 cut(s)	9, 12, 655
Tsp45I	GTSAC	1 cut(s)	775
TspDTI	ATGAA	7 cut(s)	17, 81, 299, 470, 476, 614, 657
TspRI	CASTG	2 cut(s)	450, 577
XagI	CCTNNNNNAGG	1 cut(s)	431
XapI	RAATTY	3 cut(s)	41, 548, 697
XbaI	TCTAGA	1 cut(s)	706
XmiI	GTMKAC	1 cut(s)	920
XspI	CTAG	3 cut(s)	18, 309, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.