Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005187

Physical Location & Seq

Genomic Coordinates Reverse (-)

2990443 .. 2992013

Gene Structure 1571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G041900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGAAGAAGCACTGAGACTTCGTAGATCCTCATACCGGGGATACCGAACGCTCCCATCAAGTTACCTTGGTTCATCTCAGCAAAAGAGGAATATACTGTGGAAGGTCTTGAAACAAGTAGCTCTGAGCGTTAAGAAATCCGTAGGACAAAGGAAGGAAGGCAATTCAGAAAAGCTTCAGGAGCCCCTCTTGGATGATAGTAGTAATTGGCTTCACGATGGCCAAATACCAGCTGATCAAGGAATTCAAAGGGAACCCAGTTACCATATACGTCATCAGAATTCAATGAGAATGAAAATATATGTGAAAATTCCATCAAATCAGAAGACCATTGTATTTGAAGCAAAAGGGTACTATACCATCAATGACATCAAATCCATGATTCAGTTGAAGGAGGGAATTCAATTAGACCAGTACACTTTAGTTTATGGTGGGAAACTACTTCAAGATTATCGGACATTGGCCTCGCTTGATATACGGACAGAATCAACCCTTTATATGATTTTTAATCCAAGAGATGTTATGCCAATTTTTGTGAAAACACCAAGTGGAAAGATTGTCAAGGTTGAAGTTAAGGTCTTGTACACTCTCCAGGATGTCAAAGCGATTGTTGAGAGCTTTATAGGATGTCCTGTTGCTGATTGTAGAATTATTTATGCAGGAAATGAGCTGCAGGATTGCAAGACTTTGGCTTTCTACAACATTGAAGAAAATTCCACTTTGGAGGTGCTGCCTTCTTGGATTCAGATATTTATTAAGACATGGAATGGGAAAACCATTACGCTTGATGTGGCACGATCGAATACTGTCAGAGAGGTGAAGGACAAGATATTTTGTAAGGTTAGAGTGCCAGTTCATTTTCAGAGTATTGTATTTTCCGGAAAACGCCTTGAAGATAAATGGCGTCTTGCAAGATACAACATCGAGAAAGACTCCACTCTCCACATGGTTTTGGCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

321

Amino Acids

37.09

Weight (kDa)

9.48

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005187)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03990 FvH4_4g03992
malus_domestica	MD16G1221600.v1.1
prunus_persica	Prupe.1G041900_v2.0.a1 Prupe.1G042000_v2.0.a1
pyrus_communis	pycom13g18970
rosa_chinensis	RchiOBHm_Chr4g0394221 RchiOBHm_Chr4g0394231 RchiOBHm_Chr4g0394241
rosa_laevigata	RLG00000009712
rosa_multiflora	Rmu_co7959593.1_g000001 Rmu_co8171576.1_g000001 Rmu_sc0000295.1_g000005 Rmu_sc0007246.1_g000006 Rmu_sc0007246.1_g000007 Rmu_sc0024069.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339280 Rroxscaffold_5G00339290
rosa_samantha	Rh4AG050900 Rh4AG051000 Rh4BG047800 Rh4BG047900 Rh4BG048000 Rh4CG054500 Rh4CG054600 Rh4CG054700 Rh4DG047500 Rh4DG047700
rosa_wichuraiana	Rw4G004050 Rw4G004060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	878
AclWI	GGATC	1 cut(s)	21
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	5 cut(s)	243, 280, 309, 399, 712
AcuI	CTGAAG	1 cut(s)	161
AcyI	GRCGYC	1 cut(s)	904
AdeI	CACNNNGTG	1 cut(s)	548
AfaI	GTAC	3 cut(s)	353, 416, 584
AfiI	CCNNNNNNNGG	1 cut(s)	36
AjnI	CCWGG	1 cut(s)	591
AluBI	AGCT	5 cut(s)	122, 175, 233, 618, 670
AluI	AGCT	5 cut(s)	122, 175, 233, 618, 670
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	1 cut(s)	21
Aor13HI	TCCGGA	1 cut(s)	878
AoxI	GGCC	2 cut(s)	220, 462
ApeKI	GCWGC	2 cut(s)	670, 730
ApoI	RAATTY	5 cut(s)	243, 280, 309, 399, 712
Asp700I	GAANNNNTTC	1 cut(s)	174
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	829
BalI	TGGCCA	1 cut(s)	222
BanII	GRGCYC	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	657, 717
BccI	CCATC	4 cut(s)	64, 212, 322, 368
BciT130I	CCWGG	1 cut(s)	593
BciVI	GTATCC	1 cut(s)	35
BclI	TGATCA	1 cut(s)	235
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	10
BfmI	CTRYAG	1 cut(s)	671
BfuI	GTATCC	1 cut(s)	35
BisI	GCNGC	2 cut(s)	671, 731
BlsI	GCNGC	2 cut(s)	672, 732
Bme1390I	CCNGG	2 cut(s)	38, 593
BmiI	GGNNCC	2 cut(s)	183, 255
BmrFI	CCNGG	2 cut(s)	38, 593
BmrI	ACTGGG	1 cut(s)	252
BmuI	ACTGGG	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	332
BplI	GAGNNNNNCTC	2 cut(s)	917, 949
BpmI	CTGGAG	1 cut(s)	575
BpuMI	CCSGG	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	904
BsaJI	CCNNGG	2 cut(s)	37, 67
BsaWI	WCCGGW	1 cut(s)	878
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
Bse1I	ACTGG	3 cut(s)	258, 412, 851
BseAI	TCCGGA	1 cut(s)	878
BseBI	CCWGG	1 cut(s)	593
BseDI	CCNNGG	2 cut(s)	37, 67
BseGI	GGATG	3 cut(s)	199, 601, 632
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMII	CTCAG	3 cut(s)	5, 92, 116
BseNI	ACTGG	3 cut(s)	258, 412, 851
BseXI	GCAGC	2 cut(s)	657, 717
Bsh1285I	CGRYCG	1 cut(s)	800
BshFI	GGCC	2 cut(s)	222, 464
BsiEI	CGRYCG	1 cut(s)	800
BsiSI	CCGG	2 cut(s)	37, 879
BslI	CCNNNNNNNGG	1 cut(s)	36
BsmAI	GTCTC	1 cut(s)	10
BsnI	GGCC	2 cut(s)	222, 464
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp13I	TCCGGA	1 cut(s)	878
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	3 cut(s)	26, 235, 797
BspANI	GGCC	2 cut(s)	222, 464
BspCNI	CTCAG	3 cut(s)	6, 91, 117
BspEI	TCCGGA	1 cut(s)	878
BspLI	GGNNCC	2 cut(s)	183, 255
BspMAI	CTGCAG	1 cut(s)	675
BspPI	GGATC	1 cut(s)	21
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	3 cut(s)	258, 412, 851
BssECI	CCNNGG	2 cut(s)	37, 67
BssMI	GATC	3 cut(s)	26, 235, 797
BssNI	GRCGYC	1 cut(s)	904
BssT1I	CCWWGG	1 cut(s)	67
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	2 cut(s)	99, 808
BstACI	GRCGYC	1 cut(s)	904
BstAUI	TGTACA	1 cut(s)	582
BstDEI	CTNAG	3 cut(s)	14, 78, 125
BstF5I	GGATG	3 cut(s)	199, 601, 632
BstKTI	GATC	3 cut(s)	29, 238, 800
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	3 cut(s)	26, 235, 797
BstMCI	CGRYCG	1 cut(s)	800
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstNI	CCWGG	1 cut(s)	593
BstSCI	CCNGG	2 cut(s)	36, 591
BstSFI	CTRYAG	1 cut(s)	671
BstV1I	GCAGC	2 cut(s)	657, 717
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BsuI	GTATCC	1 cut(s)	35
BsuRI	GGCC	2 cut(s)	222, 464
BtsCI	GGATG	3 cut(s)	199, 601, 632
BtsIMutI	CAGTG	1 cut(s)	11
CseI	GACGC	1 cut(s)	893
Csp6I	GTAC	3 cut(s)	352, 415, 583
CviAII	CATG	3 cut(s)	379, 762, 946
CviQI	GTAC	3 cut(s)	352, 415, 583
DdeI	CTNAG	3 cut(s)	14, 78, 125
DpnI	GATC	3 cut(s)	28, 237, 799
DpnII	GATC	3 cut(s)	26, 235, 797
DraIII	CACNNNGTG	1 cut(s)	548
EaeI	YGGCCR	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	161
EcoRI	GAATTC	3 cut(s)	243, 280, 399
EcoRII	CCWGG	1 cut(s)	591
EcoT14I	CCWWGG	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	3 cut(s)	382, 765, 949
FatI	CATG	3 cut(s)	378, 761, 945
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	2 cut(s)	671, 731
FokI	GGATG	3 cut(s)	206, 608, 639
FriOI	GRGCYC	1 cut(s)	186
Fsp4HI	GCNGC	2 cut(s)	671, 731
GluI	GCNGC	2 cut(s)	671, 731
GsuI	CTGGAG	1 cut(s)	575
HaeIII	GGCC	2 cut(s)	222, 464
HapII	CCGG	2 cut(s)	37, 879
HgaI	GACGC	1 cut(s)	893
Hin1I	GRCGYC	1 cut(s)	904
Hin1II	CATG	3 cut(s)	382, 765, 949
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	4 cut(s)	382, 485, 742, 932
HpaII	CCGG	2 cut(s)	37, 879
HphI	GGTGA	1 cut(s)	829
Hpy166II	GTNNAC	2 cut(s)	417, 585
Hpy188I	TCNGA	8 cut(s)	126, 169, 279, 324, 456, 747, 812, 864
Hpy188III	TCNNGA	6 cut(s)	109, 179, 215, 446, 879, 925
Hpy8I	GTNNAC	2 cut(s)	417, 585
HpyAV	CCTTC	6 cut(s)	97, 148, 152, 385, 744, 814
HpyCH4III	ACNGT	2 cut(s)	99, 808
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	4 cut(s)	659, 673, 681, 911
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
HpyF3I	CTNAG	3 cut(s)	14, 78, 125
HpySE526I	ACGT	1 cut(s)	271
Hsp92I	GRCGYC	1 cut(s)	904
Hsp92II	CATG	3 cut(s)	382, 765, 949
Kpn2I	TCCGGA	1 cut(s)	878
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	26, 235, 797
LmnI	GCTCC	2 cut(s)	57, 181
Lsp1109I	GCAGC	2 cut(s)	657, 717
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	2 cut(s)	62, 260
MalI	GATC	3 cut(s)	28, 237, 799
MboI	GATC	3 cut(s)	26, 235, 797
MboII	GAAGA	4 cut(s)	17, 337, 719, 905
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	186
MlsI	TGGCCA	1 cut(s)	222
MluNI	TGGCCA	1 cut(s)	222
MlyI	GAGTC	1 cut(s)	926
MnlI	CCTC	7 cut(s)	40, 81, 197, 388, 475, 718, 808
Mox20I	TGGCCA	1 cut(s)	222
MroI	TCCGGA	1 cut(s)	878
MroXI	GAANNNNTTC	1 cut(s)	174
MscI	TGGCCA	1 cut(s)	222
MseI	TTAA	4 cut(s)	132, 507, 573, 756
Msp20I	TGGCCA	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	2 cut(s)	37, 879
MspR9I	CCNGG	2 cut(s)	38, 593
MvaI	CCWGG	1 cut(s)	593
MwoI	GCNNNNNNNGC	1 cut(s)	181
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	3 cut(s)	26, 235, 797
NlaIII	CATG	3 cut(s)	382, 765, 949
NlaIV	GGNNCC	2 cut(s)	183, 255
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	3 cut(s)	382, 485, 742
PfoI	TCCNGGA	1 cut(s)	591
PkrI	GCNGC	2 cut(s)	672, 732
Ple19I	CGATCG	1 cut(s)	800
PleI	GAGTC	1 cut(s)	926
PpsI	GAGTC	1 cut(s)	926
Psp6I	CCWGG	1 cut(s)	591
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	2 cut(s)	183, 255
PstI	CTGCAG	1 cut(s)	675
PsuI	RGATCY	1 cut(s)	26
PvuI	CGATCG	1 cut(s)	800
PvuII	CAGCTG	1 cut(s)	233
RsaI	GTAC	3 cut(s)	353, 416, 584
RsaNI	GTAC	3 cut(s)	352, 415, 583
SaqAI	TTAA	4 cut(s)	132, 507, 573, 756
SatI	GCNGC	2 cut(s)	671, 731
Sau3AI	GATC	3 cut(s)	26, 235, 797
SchI	GAGTC	1 cut(s)	926
ScrFI	CCNGG	2 cut(s)	38, 593
SduI	GDGCHC	1 cut(s)	186
SfcI	CTRYAG	1 cut(s)	671
StyD4I	CCNGG	2 cut(s)	36, 591
StyI	CCWWGG	1 cut(s)	67
TaaI	ACNGT	2 cut(s)	99, 808
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	2 cut(s)	800, 924
TatI	WGTACW	2 cut(s)	414, 582
TfiI	GAWTC	3 cut(s)	382, 485, 742
Tru1I	TTAA	4 cut(s)	132, 507, 573, 756
Tru9I	TTAA	4 cut(s)	132, 507, 573, 756
TscAI	CASTG	1 cut(s)	18
TseI	GCWGC	2 cut(s)	670, 730
TspDTI	ATGAA	3 cut(s)	63, 308, 845
TspGWI	ACGGA	2 cut(s)	130, 493
TspRI	CASTG	1 cut(s)	18
XapI	RAATTY	5 cut(s)	243, 280, 309, 399, 712
XcmI	CCANNNNNNNNNTGG	1 cut(s)	943
XmnI	GAANNNNTTC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.