Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005187

Physical Location & Seq

Genomic Coordinates Forward (+)

56809527 .. 56813156

Gene Structure 3630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009712

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAAGGGCAGGCTGGGCAGCAGCACTAGCGGTAGTCGGATTGCACCAGGACTTTCCCGTGCTCGAAAATTCCAGTCGAGTTCCACCCAAGATGAAGAGATATCCTTGAACATTATAGGAACAGTCTTTAAGCTCAAGAGCTCTGCAACCATAAAAGATATCAAGACAATGTTACGTAACAAATACAGATTTCCTGAGAATCATCTGGAGTTCTTCTTGGCTGGTCAGCCTCTCATGGACTTCCAAAGGGTAGTCGACTGTGGATTTCTTGAATGTGCTGTTGATCTTGTTTTCAAGAACTTTGTGGGAATGAAATTATTTGTCAAACTACGATCTAGTACCCTTGAGATTGAGGGAAAAGCAGAAGATACCATCCAAAAAGTAAAAGCAATGATTCAGATTAAGGAGAAGATTCAACCCGACCAATTTACACTTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0008017 GO:0008092 GO:0008150 GO:0008574 GO:0009524 GO:0009987 GO:0010970 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030705 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0047496 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0072384 GO:0099111 GO:0099518 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

147

Amino Acids

16.48

Weight (kDa)

9.58

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005187)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03990 FvH4_4g03992
malus_domestica	MD16G1221600.v1.1
prunus_persica	Prupe.1G041900_v2.0.a1 Prupe.1G042000_v2.0.a1
pyrus_communis	pycom13g18970
rosa_chinensis	RchiOBHm_Chr4g0394221 RchiOBHm_Chr4g0394231 RchiOBHm_Chr4g0394241
rosa_laevigata	RLG00000009712
rosa_multiflora	Rmu_co7959593.1_g000001 Rmu_co8171576.1_g000001 Rmu_sc0000295.1_g000005 Rmu_sc0007246.1_g000006 Rmu_sc0007246.1_g000007 Rmu_sc0024069.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339280 Rroxscaffold_5G00339290
rosa_samantha	Rh4AG050900 Rh4AG051000 Rh4BG047800 Rh4BG047900 Rh4BG048000 Rh4CG054500 Rh4CG054600 Rh4CG054700 Rh4DG047500 Rh4DG047700
rosa_wichuraiana	Rw4G004050 Rw4G004060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	68
AfaI	GTAC	1 cut(s)	340
AgsI	TTSAA	4 cut(s)	109, 272, 295, 416
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	2 cut(s)	133, 141
AluI	AGCT	2 cut(s)	133, 141
Alw21I	GWGCWC	2 cut(s)	64, 143
ApeKI	GCWGC	2 cut(s)	18, 21
ApoI	RAATTY	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	143
Bbv12I	GWGCWC	2 cut(s)	64, 143
BbvI	GCAGC	2 cut(s)	30, 33
BccI	CCATC	1 cut(s)	380
BciT130I	CCWGG	1 cut(s)	48
BfaI	CTAG	2 cut(s)	27, 336
BisI	GCNGC	2 cut(s)	19, 22
BlsI	GCNGC	2 cut(s)	20, 23
Bme1390I	CCNGG	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	227
BpuEI	CTTGAG	2 cut(s)	119, 365
BsaAI	YACGTR	1 cut(s)	176
Bse1I	ACTGG	1 cut(s)	73
Bse3DI	GCAATG	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	372
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	30, 33
BseYI	CCCAGC	1 cut(s)	13
BsiHKAI	GWGCWC	2 cut(s)	64, 143
Bsp1286I	GDGCHC	2 cut(s)	64, 143
Bsp143I	GATC	2 cut(s)	283, 332
BspACI	CCGC	1 cut(s)	30
BspCNI	CTCAG	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	73
BssMI	GATC	2 cut(s)	283, 332
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	2 cut(s)	124, 260
Bst6I	CTCTTC	1 cut(s)	90
BstBAI	YACGTR	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	372
BstKTI	GATC	2 cut(s)	286, 335
BstMBI	GATC	2 cut(s)	283, 332
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 27
BstNI	CCWGG	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	46
BstSNI	TACGTA	1 cut(s)	176
BstV1I	GCAGC	2 cut(s)	30, 33
BtsCI	GGATG	1 cut(s)	372
Cac8I	GCNNGC	1 cut(s)	11
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	1 cut(s)	235
CviJI	RGCY	5 cut(s)	13, 133, 141, 221, 229
CviKI_1	RGCY	5 cut(s)	13, 133, 141, 221, 229
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	2 cut(s)	285, 334
DpnII	GATC	2 cut(s)	283, 332
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Ecl136II	GAGCTC	1 cut(s)	141
Eco105I	TACGTA	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	143
Eco32I	GATATC	2 cut(s)	102, 160
Eco53kI	GAGCTC	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	46
EcoRV	GATATC	2 cut(s)	102, 160
EcoT38I	GRGCYC	1 cut(s)	143
FaeI	CATG	1 cut(s)	238
FaiI	YATR	3 cut(s)	116, 152, 236
FatI	CATG	1 cut(s)	234
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	19, 22
FokI	GGATG	1 cut(s)	359
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	2 cut(s)	19, 22
FspBI	CTAG	2 cut(s)	27, 336
GluI	GCNGC	2 cut(s)	19, 22
GsaI	CCCAGC	1 cut(s)	17
GsuI	CTGGAG	1 cut(s)	227
Hin1II	CATG	1 cut(s)	238
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	3 cut(s)	199, 394, 412
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	39, 399
Hpy188III	TCNNGA	6 cut(s)	136, 163, 194, 206, 269, 295
Hpy8I	GTNNAC	1 cut(s)	256
HpyCH4III	ACNGT	2 cut(s)	124, 260
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	2 cut(s)	44, 146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 27
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	283, 332
LpnPI	CCDG	6 cut(s)	33, 60, 86, 191, 207, 207
Lsp1109I	GCAGC	2 cut(s)	30, 33
MaeI	CTAG	2 cut(s)	27, 336
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	2 cut(s)	171, 176
MalI	GATC	2 cut(s)	285, 334
MboI	GATC	2 cut(s)	283, 332
MboII	GAAGA	4 cut(s)	107, 205, 377, 421
MhlI	GDGCHC	2 cut(s)	64, 143
MluCI	AATT	3 cut(s)	68, 314, 425
MmeI	TCCRAC	1 cut(s)	17
MnlI	CCTC	2 cut(s)	240, 346
MseI	TTAA	2 cut(s)	129, 402
MspR9I	CCNGG	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	2 cut(s)	15, 27
NdeII	GATC	2 cut(s)	283, 332
NlaIII	CATG	1 cut(s)	238
PfeI	GAWTC	3 cut(s)	199, 394, 412
PkrI	GCNGC	2 cut(s)	20, 23
Ppu21I	YACGTR	1 cut(s)	176
Psp124BI	GAGCTC	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	46
PspFI	CCCAGC	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	46
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
SacI	GAGCTC	1 cut(s)	143
SalI	GTCGAC	1 cut(s)	254
SaqAI	TTAA	2 cut(s)	129, 402
SatI	GCNGC	2 cut(s)	19, 22
Sau3AI	GATC	2 cut(s)	283, 332
ScrFI	CCNGG	1 cut(s)	48
SduI	GDGCHC	2 cut(s)	64, 143
SetI	ASST	3 cut(s)	135, 143, 178
SmlI	CTYRAG	2 cut(s)	134, 344
SmoI	CTYRAG	2 cut(s)	134, 344
SnaBI	TACGTA	1 cut(s)	176
Sse9I	AATT	3 cut(s)	68, 314, 425
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	2 cut(s)	27, 336
SstI	GAGCTC	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	46
TaaI	ACNGT	2 cut(s)	124, 260
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	3 cut(s)	64, 77, 255
TasI	AATT	3 cut(s)	68, 314, 425
TfiI	GAWTC	3 cut(s)	199, 394, 412
Tru1I	TTAA	2 cut(s)	129, 402
Tru9I	TTAA	2 cut(s)	129, 402
TseI	GCWGC	2 cut(s)	18, 21
TspDTI	ATGAA	3 cut(s)	17, 108, 326
XapI	RAATTY	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	2 cut(s)	27, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.