Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005187

Physical Location & Seq

Genomic Coordinates Reverse (-)

3451686 .. 3454398

Gene Structure 2713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03992.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGGCAGCACTAGCACTAGTCGGGTTGCACCAGTTCTTTCCCCTGCTCGAACCATTGTCCAATTCCAGTTGAGTTCAATCCAAGATGAAGAGATATCCTTAACCATTATGGGTTCAGTCTTTAAGGTCAAGAGCTCTGCAACAATAAAAGATATCAAGGCTGTAATATGTGACATGTACAGATTTCCTGACAATCATCCAGAGTTTTTCTTGGCTGGTCAACCGCTCATGGACTTCCAAAGGGTAGTGGACTGTGGATTTCTTGAGGGCGCTGTTGATCTTGTTTTCAAGAATATTGTGGGAATTAAAATATTTGTCAAACTACCATCTAGTCAGGACACCATTGAGATCGAGGCAAAATCAGAAGATACCATCCTAAAAGTAAAAACAATGATTCAGGCTAAGGAGAAGATTCATCCAGGCCAATTCACACTTGTGTATGATGGAAAGCTCCTTGAGGATGACATGACACTGGGCTCAGTACATATGAAGAATGAGTCGACCCTTTACATGGTTTCTGCTCCTAAAGATTTTCTCTCAATATCAGTGAAAGCACCTTCAAGAGAGACTTTCAAATTCAAGGTTAAACCCTTGTTTACTGTTAGAGATGTCAAAATTATAGTTGAGAGCTATACAGGTTGCTCAATCAGTGATCACATTCTGATCTATTCCGGAAATGAGCTTGAGGATCTGAAGACATTGGCTTTTTATGACGTGAAAGATGAATCAGTATTAGAGATCTCACCTCCCCCTTTTCAGATATTTGTTAGAGTTTGTGATGGGAAACTTATAAGTATTGATGTGAAGCCGAGTGATAGTGTCGAAGAATTGAAGAGAGCGATTTTCCACAAGCTTAATGTGTCGATGATGCCTTTTGATTTTTATAAGCTTGTGTTTAGCTGGGAACAGCTCGATGAAGTTCGGAATCTGGCTAGCTACAACATCCAACAGGGCAGCAAACTTCGTTTGGTTCTCTCATCATCTGTTATTGTAAGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0008017 GO:0008092 GO:0008150 GO:0008574 GO:0009524 GO:0009987 GO:0010970 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030705 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0047496 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0072384 GO:0099111 GO:0099518 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

334

Amino Acids

37.52

Weight (kDa)

5.68

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	102 - 169	1.8e-08	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	104 - 172	9.7e-18	Ubiquitin family
Rad60-SLD	PF11976	180 - 247	1.1e-06	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	181 - 246	1.7e-10	Ubiquitin family
ubiquitin	PF00240	254 - 326	8.5e-12	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005187)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03990 FvH4_4g03992
malus_domestica	MD16G1221600.v1.1
prunus_persica	Prupe.1G041900_v2.0.a1 Prupe.1G042000_v2.0.a1
pyrus_communis	pycom13g18970
rosa_chinensis	RchiOBHm_Chr4g0394221 RchiOBHm_Chr4g0394231 RchiOBHm_Chr4g0394241
rosa_laevigata	RLG00000009712
rosa_multiflora	Rmu_co7959593.1_g000001 Rmu_co8171576.1_g000001 Rmu_sc0000295.1_g000005 Rmu_sc0007246.1_g000006 Rmu_sc0007246.1_g000007 Rmu_sc0024069.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339280 Rroxscaffold_5G00339290
rosa_samantha	Rh4AG050900 Rh4AG051000 Rh4BG047800 Rh4BG047900 Rh4BG048000 Rh4CG054500 Rh4CG054600 Rh4CG054700 Rh4DG047500 Rh4DG047700
rosa_wichuraiana	Rw4G004050 Rw4G004060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	791, 885
AccBSI	CCGCTC	1 cut(s)	226
AccI	GTMKAC	1 cut(s)	500
AccIII	TCCGGA	1 cut(s)	671
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	1 cut(s)	696
AcsI	RAATTY	1 cut(s)	575
AcuI	CTGAAG	1 cut(s)	713
AfaI	GTAC	2 cut(s)	179, 483
AfiI	CCNNNNNNNGG	1 cut(s)	511
AflIII	ACRYGT	1 cut(s)	174
AgsI	TTSAA	6 cut(s)	78, 289, 561, 574, 580, 832
AhlI	ACTAGT	1 cut(s)	17
AjiI	CACGTC	1 cut(s)	715
AjnI	CCWGG	1 cut(s)	418
AleI	CACNNNNGTG	1 cut(s)	434
AluBI	AGCT	9 cut(s)	135, 451, 630, 682, 853, 889, 900, 910, 936
AluI	AGCT	9 cut(s)	135, 451, 630, 682, 853, 889, 900, 910, 936
Alw21I	GWGCWC	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	560
AlwI	GGATC	1 cut(s)	696
Aor13HI	TCCGGA	1 cut(s)	671
AoxI	GGCC	1 cut(s)	421
ApeKI	GCWGC	2 cut(s)	6, 954
ApoI	RAATTY	1 cut(s)	575
AspLEI	GCGC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	735
AsuNHI	GCTAGC	1 cut(s)	932
BanII	GRGCYC	2 cut(s)	137, 479
BbsI	GAAGAC	1 cut(s)	701
Bbv12I	GWGCWC	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	18, 966
BccI	CCATC	4 cut(s)	334, 380, 437, 773
BciT130I	CCWGG	1 cut(s)	420
BclI	TGATCA	1 cut(s)	652
BcoDI	GTCTC	1 cut(s)	560
BcuI	ACTAGT	1 cut(s)	17
BfaI	CTAG	4 cut(s)	12, 18, 330, 933
BfoI	RGCGCY	1 cut(s)	273
BglII	AGATCT	1 cut(s)	738
BisI	GCNGC	2 cut(s)	7, 955
BlsI	GCNGC	2 cut(s)	8, 956
Bme1390I	CCNGG	1 cut(s)	420
BmgBI	CACGTC	1 cut(s)	715
BmrFI	CCNGG	1 cut(s)	420
BmrI	ACTGGG	1 cut(s)	482
BmsI	GCATC	1 cut(s)	858
BmtI	GCTAGC	1 cut(s)	936
BmuI	ACTGGG	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	701
Bpu10I	CCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	3 cut(s)	284, 476, 704
BsaWI	WCCGGW	1 cut(s)	671
Bsc4I	CCNNNNNNNGG	1 cut(s)	511
Bse1I	ACTGG	3 cut(s)	32, 67, 477
BseAI	TCCGGA	1 cut(s)	671
BseBI	CCWGG	1 cut(s)	420
BseGI	GGATG	5 cut(s)	196, 372, 415, 466, 942
BseLI	CCNNNNNNNGG	1 cut(s)	511
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	3 cut(s)	32, 67, 477
BseXI	GCAGC	2 cut(s)	18, 966
BseYI	CCCAGC	1 cut(s)	900
BshFI	GGCC	1 cut(s)	423
BsiHKAI	GWGCWC	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	672
BslI	CCNNNNNNNGG	1 cut(s)	511
BsmAI	GTCTC	1 cut(s)	560
BsnI	GGCC	1 cut(s)	423
Bsp1286I	GDGCHC	2 cut(s)	137, 479
Bsp13I	TCCGGA	1 cut(s)	671
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	6 cut(s)	277, 348, 652, 663, 688, 738
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	1 cut(s)	423
BspCNI	CTCAG	1 cut(s)	491
BspEI	TCCGGA	1 cut(s)	671
BspOI	GCTAGC	1 cut(s)	936
BspPI	GGATC	1 cut(s)	696
BsrBI	CCGCTC	1 cut(s)	226
BsrGI	TGTACA	1 cut(s)	177
BsrI	ACTGG	3 cut(s)	32, 67, 477
BssMI	GATC	6 cut(s)	277, 348, 652, 663, 688, 738
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	2 cut(s)	254, 601
Bst6I	CTCTTC	2 cut(s)	84, 827
BstAUI	TGTACA	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	934
BstDEI	CTNAG	2 cut(s)	402, 478
BstF5I	GGATG	5 cut(s)	196, 372, 415, 466, 942
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	6 cut(s)	280, 351, 655, 666, 691, 741
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	6 cut(s)	277, 348, 652, 663, 688, 738
BstMWI	GCNNNNNNNGC	1 cut(s)	12
BstNI	CCWGG	1 cut(s)	420
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	418
BstV1I	GCAGC	2 cut(s)	18, 966
BstV2I	GAAGAC	1 cut(s)	701
BstX2I	RGATCY	2 cut(s)	688, 738
BstYI	RGATCY	2 cut(s)	688, 738
BsuRI	GGCC	1 cut(s)	423
BtrI	CACGTC	1 cut(s)	715
BtsCI	GGATG	5 cut(s)	196, 372, 415, 466, 942
BtsIMutI	CAGTG	3 cut(s)	470, 552, 655
Cac8I	GCNNGC	1 cut(s)	934
CfoI	GCGC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	178, 482
CviAII	CATG	4 cut(s)	175, 229, 466, 511
CviQI	GTAC	2 cut(s)	178, 482
DdeI	CTNAG	2 cut(s)	402, 478
DpnI	GATC	6 cut(s)	279, 350, 654, 665, 690, 740
DpnII	GATC	6 cut(s)	277, 348, 652, 663, 688, 738
Eam1104I	CTCTTC	2 cut(s)	84, 827
EarI	CTCTTC	2 cut(s)	84, 827
Ecl136II	GAGCTC	1 cut(s)	135
Eco24I	GRGCYC	2 cut(s)	137, 479
Eco32I	GATATC	2 cut(s)	96, 154
Eco53kI	GAGCTC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	713
EcoICRI	GAGCTC	1 cut(s)	135
EcoRII	CCWGG	1 cut(s)	418
EcoRV	GATATC	2 cut(s)	96, 154
EcoT38I	GRGCYC	2 cut(s)	137, 479
FaeI	CATG	4 cut(s)	178, 232, 469, 514
FalI	AAGNNNNNCTT	2 cut(s)	553, 585
FatI	CATG	4 cut(s)	174, 228, 465, 510
FauNDI	CATATG	1 cut(s)	486
FbaI	TGATCA	1 cut(s)	652
FblI	GTMKAC	1 cut(s)	500
Fnu4HI	GCNGC	2 cut(s)	7, 955
FokI	GGATG	5 cut(s)	183, 359, 402, 473, 929
FriOI	GRGCYC	2 cut(s)	137, 479
Fsp4HI	GCNGC	2 cut(s)	7, 955
FspBI	CTAG	4 cut(s)	12, 18, 330, 933
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	2 cut(s)	7, 955
GsaI	CCCAGC	1 cut(s)	904
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	423
HapII	CCGG	1 cut(s)	672
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	4 cut(s)	178, 232, 469, 514
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HincII	GTYRAC	2 cut(s)	221, 501
HindII	GTYRAC	2 cut(s)	221, 501
HindIII	AAGCTT	2 cut(s)	851, 887
HinfI	GANTC	5 cut(s)	394, 412, 497, 725, 925
HpaII	CCGG	1 cut(s)	672
HphI	GGTGA	1 cut(s)	735
Hpy166II	GTNNAC	4 cut(s)	221, 250, 501, 597
Hpy188I	TCNGA	5 cut(s)	364, 663, 693, 759, 924
Hpy188III	TCNNGA	8 cut(s)	130, 188, 200, 263, 289, 335, 561, 672
Hpy8I	GTNNAC	4 cut(s)	221, 250, 501, 597
HpyAV	CCTTC	1 cut(s)	567
HpyCH4III	ACNGT	2 cut(s)	254, 601
HpyCH4IV	ACGT	1 cut(s)	714
HpyCH4V	TGCA	2 cut(s)	29, 140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	12
HpyF3I	CTNAG	2 cut(s)	402, 478
HpySE526I	ACGT	1 cut(s)	714
Hsp92II	CATG	4 cut(s)	178, 232, 469, 514
HspAI	GCGC	1 cut(s)	270
Kpn2I	TCCGGA	1 cut(s)	671
Ksp22I	TGATCA	1 cut(s)	652
Kzo9I	GATC	6 cut(s)	277, 348, 652, 663, 688, 738
LmnI	GCTCC	2 cut(s)	456, 526
Lsp1109I	GCAGC	2 cut(s)	18, 966
LweI	GCATC	1 cut(s)	858
MaeI	CTAG	4 cut(s)	12, 18, 330, 933
MaeII	ACGT	1 cut(s)	714
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	6 cut(s)	279, 350, 654, 665, 690, 740
MbiI	CCGCTC	1 cut(s)	226
MboI	GATC	6 cut(s)	277, 348, 652, 663, 688, 738
MboII	GAAGA	7 cut(s)	101, 377, 421, 502, 706, 836, 844
MflI	RGATCY	2 cut(s)	688, 738
MhlI	GDGCHC	2 cut(s)	137, 479
MluCI	AATT	6 cut(s)	62, 303, 425, 575, 615, 827
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	1 cut(s)	970
MnlI	CCTC	5 cut(s)	259, 346, 451, 679, 756
MroI	TCCGGA	1 cut(s)	671
MseI	TTAA	6 cut(s)	101, 123, 306, 585, 855, 1000
MslI	CAYNNNNRTG	1 cut(s)	434
MspI	CCGG	1 cut(s)	672
MspR9I	CCNGG	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	420
MwoI	GCNNNNNNNGC	1 cut(s)	12
NdeI	CATATG	1 cut(s)	486
NdeII	GATC	6 cut(s)	277, 348, 652, 663, 688, 738
NheI	GCTAGC	1 cut(s)	932
NlaIII	CATG	4 cut(s)	178, 232, 469, 514
NmeAIII	GCCGAG	1 cut(s)	834
NmuCI	GTSAC	1 cut(s)	170
NspI	RCATGY	1 cut(s)	178
OliI	CACNNNNGTG	1 cut(s)	434
PciI	ACATGT	1 cut(s)	174
PfeI	GAWTC	4 cut(s)	394, 412, 725, 925
PkrI	GCNGC	2 cut(s)	8, 956
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
PscI	ACATGT	1 cut(s)	174
PsiI	TTATAA	2 cut(s)	791, 885
Psp124BI	GAGCTC	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	418
PspFI	CCCAGC	1 cut(s)	900
PspGI	CCWGG	1 cut(s)	418
PsuI	RGATCY	2 cut(s)	688, 738
RsaI	GTAC	2 cut(s)	179, 483
RsaNI	GTAC	2 cut(s)	178, 482
RseI	CAYNNNNRTG	1 cut(s)	434
SacI	GAGCTC	1 cut(s)	137
SalI	GTCGAC	1 cut(s)	499
SaqAI	TTAA	6 cut(s)	101, 123, 306, 585, 855, 1000
SatI	GCNGC	2 cut(s)	7, 955
Sau3AI	GATC	6 cut(s)	277, 348, 652, 663, 688, 738
SchI	GAGTC	1 cut(s)	506
ScrFI	CCNGG	1 cut(s)	420
SduI	GDGCHC	2 cut(s)	137, 479
SfaNI	GCATC	1 cut(s)	858
SmiMI	CAYNNNNRTG	1 cut(s)	434
SmlI	CTYRAG	3 cut(s)	263, 455, 683
SmoI	CTYRAG	3 cut(s)	263, 455, 683
SpeI	ACTAGT	1 cut(s)	17
Sse9I	AATT	6 cut(s)	62, 303, 425, 575, 615, 827
SsiI	CCGC	1 cut(s)	224
SspI	AATATT	2 cut(s)	295, 312
SspMI	CTAG	4 cut(s)	12, 18, 330, 933
SstI	GAGCTC	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	418
TaaI	ACNGT	2 cut(s)	254, 601
TaiI	ACGT	1 cut(s)	717
TaqI	TCGA	6 cut(s)	49, 351, 500, 822, 863, 912
TasI	AATT	6 cut(s)	62, 303, 425, 575, 615, 827
TatI	WGTACW	2 cut(s)	177, 481
TfiI	GAWTC	4 cut(s)	394, 412, 725, 925
Tru1I	TTAA	6 cut(s)	101, 123, 306, 585, 855, 1000
Tru9I	TTAA	6 cut(s)	101, 123, 306, 585, 855, 1000
TscAI	CASTG	3 cut(s)	477, 552, 655
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	2 cut(s)	6, 954
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	5 cut(s)	102, 404, 503, 738, 930
TspRI	CASTG	3 cut(s)	477, 552, 655
XapI	RAATTY	1 cut(s)	575
XceI	RCATGY	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	500
XspI	CTAG	4 cut(s)	12, 18, 330, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.