Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005187

Physical Location & Seq

Genomic Coordinates Reverse (-)

8070511 .. 8073901

Gene Structure 3391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G004060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1566 bp

ATGAAGGGCAGCAGCACTAGCGGTAGTCGGATTGCACCACGAAAGTTCCAGTTGAGTTCCACCCAAGATGAAGAGATATCCTTGAACATTATAGGAACAGTCTTTAAGTTCAAGAGCTCTGCAACCATAAAAGATCTCAAGACAATGTTATGTAACAAGTACGGATTTCCTGAGAATCATCTGGAGTTCTTCTTGGCTGGTCAGCCTCTCATGGACTTCCAAAGGGTAGTTGACTGTGGATTTCTTGAGTGCGCTGTTGATCTTGTTTTCAAGAATATTGTGGGAATGAAATTATTTGTCAAACTACCATCTAGTACCATTGAGATTGAGGGAAAAGCAGAAGATACCATCCAAAAAGTAAAAGCAATGATTCAGGCTAAGGAGAAGATTCAACCCAACAAATTCACACTCGTCTATGATGGAAAGTTCCTTGAGGAGGACATGACACTGGCCTCACTTCGTATGAAGAATGAGTCAACTCTTCATATTATTTTTAATCCAAGAGATGTGATGTCAGTTTTTGTGAAAACACCAAGTGGGAAGATTGTGGAATTTGAAGTTAAGGTCTTGTACACTGTCAGCGATGTCAAGCAGATTGTTGAGAGCTTTATAGGATGTTCTGTTGTTGATTGTAGTTTGTTTTATGAAGGAAATGAGCTGCAAGATTTCAAGACCTTGGCTTTCTACAACATTGAAGAAAATTCCACTCTAGAGGTGAAGCCTTCTAGGATTCAGATATTTGTCAAGACATGGAGTGGAAAAACCATTACACTTGATGTGACACGATCAGATACTGTAAGAGAGGTGAAGGAGAAGATATTTTGTAAGATATCCTTGAACATTATAGGAACAGTCTTTAAGCTCAAGAGCTCTGCAACCATAAAAGATATCAAGACAATGTTACGTAACAAATACAGATTTCCTGAGAATCATCTGGAGTTCTTCTTGGCTGGTCAGCCTCTCATGGACTTCCAAAGGGTAGTCGACTGTGGATTTCTTGAATGCGCTGTTGATCTTGTTTTCAAGAACTTTGTGGGAATGAAATTATTTGTCAAACTACCGTCTAGAGAAGTTCAACCCGACCCATTTACACTTGTCTATGATGGAAAGTTCCTTGAGGAGGACATGACACTGGCCTCATTACGTATGAAGAATGGGTGGACTCTTTACATGGTTTCTGCTCCTAAACATATTCTTTCAATATCAGTGAAAGCACCTTCAGGAGACTTTAAGTTCAAGGTTAAACCCTTGTTTACTGTTAGAGATGTCAAAACTATAGTTGAGAGCTATACAGGTTGCTCAGTCAGTGATCACAATCTGATCTATTCCGGAAATGAGCTTGAGGGTCTGAAGACATTGGCATTTTATGACATCGAGGATGAATCAATATTTGTTAAAGTTTGTGATGGCAAAATTGTTGCTGTTGATGTGAAGCAGAGTGACAGTGTCAAAGAACTGAAGAGCAAGATTTTTAAGCGTGTGATGATGCCTTTTGATTTCTATAAGCATGTGTTTCACTGGGAACAACTTGATGAAGTTCAGGATCTGGCAAGCTACAACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0008017 GO:0008092 GO:0008150 GO:0008574 GO:0009524 GO:0009987 GO:0010970 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030705 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0047496 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0072384 GO:0099111 GO:0099518 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

521

Amino Acids

59.45

Weight (kDa)

7.49

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	98 - 167	1.1e-16	Ubiquitin family
Rad60-SLD	PF11976	105 - 164	3.4e-08	Ubiquitin-2 like Rad60 SUMO-like
Rad60-SLD	PF11976	171 - 239	9.8e-07	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	173 - 239	8.5e-12	Ubiquitin family
ubiquitin	PF00240	246 - 276	1.1e-06	Ubiquitin family
ubiquitin	PF00240	401 - 463	2.1e-08	Ubiquitin family
ubiquitin	PF00240	463 - 521	2.6e-06	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005187)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03990 FvH4_4g03992
malus_domestica	MD16G1221600.v1.1
prunus_persica	Prupe.1G041900_v2.0.a1 Prupe.1G042000_v2.0.a1
pyrus_communis	pycom13g18970
rosa_chinensis	RchiOBHm_Chr4g0394221 RchiOBHm_Chr4g0394231 RchiOBHm_Chr4g0394241
rosa_laevigata	RLG00000009712
rosa_multiflora	Rmu_co7959593.1_g000001 Rmu_co8171576.1_g000001 Rmu_sc0000295.1_g000005 Rmu_sc0007246.1_g000006 Rmu_sc0007246.1_g000007 Rmu_sc0024069.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339280 Rroxscaffold_5G00339290
rosa_samantha	Rh4AG050900 Rh4AG051000 Rh4BG047800 Rh4BG047900 Rh4BG048000 Rh4CG054500 Rh4CG054600 Rh4CG054700 Rh4DG047500 Rh4DG047700
rosa_wichuraiana	Rw4G004050 Rw4G004060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	984
AccIII	TCCGGA	1 cut(s)	1328
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	1 cut(s)	1551
AcsI	RAATTY	3 cut(s)	401, 551, 700
AcuI	CTGAAG	3 cut(s)	1203, 1370, 1478
AdeI	CACNNNGTG	1 cut(s)	536
AfaI	GTAC	3 cut(s)	161, 316, 572
AfiI	CCNNNNNNNGG	2 cut(s)	436, 1120
AluBI	AGCT	8 cut(s)	117, 606, 658, 862, 870, 1287, 1339, 1554
AluI	AGCT	8 cut(s)	117, 606, 658, 862, 870, 1287, 1339, 1554
Alw21I	GWGCWC	2 cut(s)	119, 872
Alw26I	GTCTC	1 cut(s)	1218
AlwI	GGATC	1 cut(s)	1551
AlwNI	CAGNNNCTG	2 cut(s)	794, 1546
Aor13HI	TCCGGA	1 cut(s)	1328
AoxI	GGCC	2 cut(s)	450, 1134
ApeKI	GCWGC	3 cut(s)	9, 12, 658
ApoI	RAATTY	3 cut(s)	401, 551, 700
AspLEI	GCGC	2 cut(s)	254, 1007
AsuHPI	GGTGA	2 cut(s)	727, 817
BanII	GRGCYC	2 cut(s)	119, 872
BbsI	GAAGAC	1 cut(s)	1358
Bbv12I	GWGCWC	2 cut(s)	119, 872
BbvI	GCAGC	3 cut(s)	21, 24, 645
BccI	CCATC	5 cut(s)	316, 356, 413, 1097, 1400
BclI	TGATCA	1 cut(s)	1309
BcoDI	GTCTC	1 cut(s)	1218
BfaI	CTAG	5 cut(s)	18, 312, 710, 726, 1065
BfmI	CTRYAG	1 cut(s)	1275
BglII	AGATCT	1 cut(s)	133
BisI	GCNGC	3 cut(s)	10, 13, 659
BlsI	GCNGC	3 cut(s)	11, 14, 660
BmrI	ACTGGG	1 cut(s)	1528
BmsI	GCATC	1 cut(s)	1476
BmuI	ACTGGG	1 cut(s)	1528
BpiI	GAAGAC	1 cut(s)	1358
BpmI	CTGGAG	2 cut(s)	203, 956
Bpu10I	CCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	6 cut(s)	122, 266, 452, 848, 1136, 1361
BsaAI	YACGTR	2 cut(s)	905, 1145
BsaBI	GATNNNNATC	1 cut(s)	1314
BsaJI	CCNNGG	1 cut(s)	675
BsaWI	WCCGGW	1 cut(s)	1328
Bsc4I	CCNNNNNNNGG	2 cut(s)	436, 1120
Bse1I	ACTGG	4 cut(s)	49, 453, 1137, 1523
Bse3DI	GCAATG	1 cut(s)	372
Bse8I	GATNNNNATC	1 cut(s)	1314
BseAI	TCCGGA	1 cut(s)	1328
BseDI	CCNNGG	1 cut(s)	675
BseGI	GGATG	3 cut(s)	348, 620, 1384
BseJI	GATNNNNATC	1 cut(s)	1314
BseLI	CCNNNNNNNGG	2 cut(s)	436, 1120
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	3 cut(s)	162, 915, 1314
BseNI	ACTGG	4 cut(s)	49, 453, 1137, 1523
BseRI	GAGGAG	2 cut(s)	449, 1133
BseXI	GCAGC	3 cut(s)	21, 24, 645
BshFI	GGCC	2 cut(s)	452, 1136
BsiHKAI	GWGCWC	2 cut(s)	119, 872
BsiSI	CCGG	1 cut(s)	1329
BslI	CCNNNNNNNGG	2 cut(s)	436, 1120
BsmAI	GTCTC	1 cut(s)	1218
BsmI	GAATGC	1 cut(s)	1007
BsnI	GGCC	2 cut(s)	452, 1136
Bsp1286I	GDGCHC	2 cut(s)	119, 872
Bsp13I	TCCGGA	1 cut(s)	1328
Bsp1407I	TGTACA	1 cut(s)	570
Bsp143I	GATC	7 cut(s)	133, 259, 785, 1012, 1309, 1320, 1543
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	2 cut(s)	452, 1136
BspCNI	CTCAG	3 cut(s)	163, 916, 1313
BspEI	TCCGGA	1 cut(s)	1328
BspPI	GGATC	1 cut(s)	1551
BspQI	GCTCTTC	1 cut(s)	1454
BsrDI	GCAATG	1 cut(s)	372
BsrGI	TGTACA	1 cut(s)	570
BsrI	ACTGG	4 cut(s)	49, 453, 1137, 1523
BssECI	CCNNGG	1 cut(s)	675
BssMI	GATC	7 cut(s)	133, 259, 785, 1012, 1309, 1320, 1543
BssT1I	CCWWGG	1 cut(s)	675
Bst4CI	ACNGT	9 cut(s)	100, 236, 577, 796, 853, 989, 1062, 1258, 1445
Bst6I	CTCTTC	3 cut(s)	66, 486, 1454
BstAUI	TGTACA	1 cut(s)	570
BstBAI	YACGTR	2 cut(s)	905, 1145
BstC8I	GCNNGC	1 cut(s)	1552
BstDEI	CTNAG	4 cut(s)	171, 378, 924, 1300
BstENI	CCTNNNNNAGG	2 cut(s)	434, 1118
BstF5I	GGATG	3 cut(s)	348, 620, 1384
BstHHI	GCGC	2 cut(s)	254, 1007
BstKTI	GATC	7 cut(s)	136, 262, 788, 1015, 1312, 1323, 1546
BstMAI	GTCTC	1 cut(s)	1218
BstMBI	GATC	7 cut(s)	133, 259, 785, 1012, 1309, 1320, 1543
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstNSI	RCATGY	1 cut(s)	1511
BstSFI	CTRYAG	1 cut(s)	1275
BstSNI	TACGTA	2 cut(s)	905, 1145
BstV1I	GCAGC	3 cut(s)	21, 24, 645
BstV2I	GAAGAC	1 cut(s)	1358
BstX2I	RGATCY	2 cut(s)	133, 1543
BstYI	RGATCY	2 cut(s)	133, 1543
BsuRI	GGCC	2 cut(s)	452, 1136
BtgZI	GCGATG	1 cut(s)	597
BtsCI	GGATG	3 cut(s)	348, 620, 1384
BtsIMutI	CAGTG	7 cut(s)	446, 573, 1130, 1212, 1312, 1450, 1516
Cac8I	GCNNGC	1 cut(s)	1552
CaiI	CAGNNNCTG	2 cut(s)	794, 1546
CfoI	GCGC	2 cut(s)	254, 1007
Csp6I	GTAC	3 cut(s)	160, 315, 571
CviAII	CATG	7 cut(s)	211, 442, 750, 964, 1126, 1171, 1508
CviQI	GTAC	3 cut(s)	160, 315, 571
DdeI	CTNAG	4 cut(s)	171, 378, 924, 1300
DpnI	GATC	7 cut(s)	135, 261, 787, 1014, 1311, 1322, 1545
DpnII	GATC	7 cut(s)	133, 259, 785, 1012, 1309, 1320, 1543
DraIII	CACNNNGTG	1 cut(s)	536
Eam1104I	CTCTTC	3 cut(s)	66, 486, 1454
EarI	CTCTTC	3 cut(s)	66, 486, 1454
Ecl136II	GAGCTC	2 cut(s)	117, 870
Eco105I	TACGTA	2 cut(s)	905, 1145
Eco130I	CCWWGG	1 cut(s)	675
Eco24I	GRGCYC	2 cut(s)	119, 872
Eco32I	GATATC	3 cut(s)	78, 831, 889
Eco53kI	GAGCTC	2 cut(s)	117, 870
Eco57I	CTGAAG	3 cut(s)	1203, 1370, 1478
EcoICRI	GAGCTC	2 cut(s)	117, 870
EcoNI	CCTNNNNNAGG	2 cut(s)	434, 1118
EcoRV	GATATC	3 cut(s)	78, 831, 889
EcoT14I	CCWWGG	1 cut(s)	675
EcoT38I	GRGCYC	2 cut(s)	119, 872
ErhI	CCWWGG	1 cut(s)	675
FaeI	CATG	7 cut(s)	214, 445, 753, 967, 1129, 1174, 1511
FalI	AAGNNNNNCTT	2 cut(s)	818, 850
FatI	CATG	7 cut(s)	210, 441, 749, 963, 1125, 1170, 1507
FbaI	TGATCA	1 cut(s)	1309
FblI	GTMKAC	1 cut(s)	984
Fnu4HI	GCNGC	3 cut(s)	10, 13, 659
FokI	GGATG	3 cut(s)	335, 627, 1391
FriOI	GRGCYC	2 cut(s)	119, 872
Fsp4HI	GCNGC	3 cut(s)	10, 13, 659
FspBI	CTAG	5 cut(s)	18, 312, 710, 726, 1065
GlaI	GCGC	2 cut(s)	253, 1006
GluI	GCNGC	3 cut(s)	10, 13, 659
GsuI	CTGGAG	2 cut(s)	203, 956
HaeIII	GGCC	2 cut(s)	452, 1136
HapII	CCGG	1 cut(s)	1329
HhaI	GCGC	2 cut(s)	254, 1007
Hin1II	CATG	7 cut(s)	214, 445, 753, 967, 1129, 1174, 1511
Hin6I	GCGC	2 cut(s)	252, 1005
HinP1I	GCGC	2 cut(s)	252, 1005
HincII	GTYRAC	3 cut(s)	232, 477, 985
HindII	GTYRAC	3 cut(s)	232, 477, 985
HinfI	GANTC	8 cut(s)	175, 370, 388, 473, 730, 928, 1162, 1382
HpaII	CCGG	1 cut(s)	1329
HphI	GGTGA	2 cut(s)	727, 817
Hpy166II	GTNNAC	6 cut(s)	232, 477, 573, 985, 1161, 1254
Hpy188I	TCNGA	6 cut(s)	30, 735, 790, 1320, 1350, 1565
Hpy8I	GTNNAC	6 cut(s)	232, 477, 573, 985, 1161, 1254
HpyAV	CCTTC	4 cut(s)	641, 732, 802, 1227
HpyCH4III	ACNGT	9 cut(s)	100, 236, 577, 796, 853, 989, 1062, 1258, 1445
HpyCH4IV	ACGT	2 cut(s)	904, 1144
HpyCH4V	TGCA	4 cut(s)	35, 122, 661, 875
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	4 cut(s)	171, 378, 924, 1300
HpySE526I	ACGT	2 cut(s)	904, 1144
Hsp92II	CATG	7 cut(s)	214, 445, 753, 967, 1129, 1174, 1511
HspAI	GCGC	2 cut(s)	252, 1005
Kpn2I	TCCGGA	1 cut(s)	1328
Ksp22I	TGATCA	1 cut(s)	1309
Kzo9I	GATC	7 cut(s)	133, 259, 785, 1012, 1309, 1320, 1543
LguI	GCTCTTC	1 cut(s)	1454
LmnI	GCTCC	1 cut(s)	1186
Lsp1109I	GCAGC	3 cut(s)	21, 24, 645
LweI	GCATC	1 cut(s)	1476
MaeI	CTAG	5 cut(s)	18, 312, 710, 726, 1065
MaeII	ACGT	2 cut(s)	904, 1144
MaeIII	GTNAC	5 cut(s)	152, 778, 900, 905, 1439
MalI	GATC	7 cut(s)	135, 261, 787, 1014, 1311, 1322, 1545
MboI	GATC	7 cut(s)	133, 259, 785, 1012, 1309, 1320, 1543
MflI	RGATCY	2 cut(s)	133, 1543
MhlI	GDGCHC	2 cut(s)	119, 872
MluCI	AATT	6 cut(s)	290, 401, 551, 700, 1043, 1413
MlyI	GAGTC	2 cut(s)	482, 1156
MmeI	TCCRAC	1 cut(s)	8
MroI	TCCGGA	1 cut(s)	1328
MseI	TTAA	8 cut(s)	105, 495, 561, 858, 1230, 1242, 1395, 1473
MspI	CCGG	1 cut(s)	1329
Mva1269I	GAATGC	1 cut(s)	1007
MwoI	GCNNNNNNNGC	1 cut(s)	18
NdeII	GATC	7 cut(s)	133, 259, 785, 1012, 1309, 1320, 1543
NlaIII	CATG	7 cut(s)	214, 445, 753, 967, 1129, 1174, 1511
NmuCI	GTSAC	2 cut(s)	778, 1439
NspI	RCATGY	1 cut(s)	1511
PciSI	GCTCTTC	1 cut(s)	1454
PctI	GAATGC	1 cut(s)	1007
PfeI	GAWTC	6 cut(s)	175, 370, 388, 730, 928, 1382
PflFI	GACNNNGTC	1 cut(s)	1445
PkrI	GCNGC	3 cut(s)	11, 14, 660
PleI	GAGTC	2 cut(s)	481, 1156
PpsI	GAGTC	2 cut(s)	481, 1156
Ppu21I	YACGTR	2 cut(s)	905, 1145
Psp124BI	GAGCTC	2 cut(s)	119, 872
PstNI	CAGNNNCTG	2 cut(s)	794, 1546
PsuI	RGATCY	2 cut(s)	133, 1543
PsyI	GACNNNGTC	1 cut(s)	1445
RsaI	GTAC	3 cut(s)	161, 316, 572
RsaNI	GTAC	3 cut(s)	160, 315, 571
SacI	GAGCTC	2 cut(s)	119, 872
SalI	GTCGAC	1 cut(s)	983
SapI	GCTCTTC	1 cut(s)	1454
SaqAI	TTAA	8 cut(s)	105, 495, 561, 858, 1230, 1242, 1395, 1473
SatI	GCNGC	3 cut(s)	10, 13, 659
Sau3AI	GATC	7 cut(s)	133, 259, 785, 1012, 1309, 1320, 1543
SchI	GAGTC	2 cut(s)	482, 1156
SduI	GDGCHC	2 cut(s)	119, 872
SfaNI	GCATC	1 cut(s)	1476
SfcI	CTRYAG	1 cut(s)	1275
SmlI	CTYRAG	6 cut(s)	137, 245, 431, 863, 1115, 1340
SmoI	CTYRAG	6 cut(s)	137, 245, 431, 863, 1115, 1340
SnaBI	TACGTA	2 cut(s)	905, 1145
Sse9I	AATT	6 cut(s)	290, 401, 551, 700, 1043, 1413
SsiI	CCGC	1 cut(s)	21
SspI	AATATT	2 cut(s)	277, 1389
SspMI	CTAG	5 cut(s)	18, 312, 710, 726, 1065
SstI	GAGCTC	2 cut(s)	119, 872
StyI	CCWWGG	1 cut(s)	675
TaaI	ACNGT	9 cut(s)	100, 236, 577, 796, 853, 989, 1062, 1258, 1445
TaiI	ACGT	2 cut(s)	907, 1147
TaqI	TCGA	2 cut(s)	984, 1374
TasI	AATT	6 cut(s)	290, 401, 551, 700, 1043, 1413
TatI	WGTACW	1 cut(s)	570
TfiI	GAWTC	6 cut(s)	175, 370, 388, 730, 928, 1382
Tru1I	TTAA	8 cut(s)	105, 495, 561, 858, 1230, 1242, 1395, 1473
Tru9I	TTAA	8 cut(s)	105, 495, 561, 858, 1230, 1242, 1395, 1473
TscAI	CASTG	7 cut(s)	453, 580, 1137, 1212, 1312, 1450, 1523
TseFI	GTSAC	2 cut(s)	778, 1439
TseI	GCWGC	3 cut(s)	9, 12, 658
Tsp45I	GTSAC	2 cut(s)	778, 1439
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	7 cut(s)	453, 580, 1137, 1212, 1312, 1450, 1523
Tth111I	GACNNNGTC	1 cut(s)	1445
XagI	CCTNNNNNAGG	2 cut(s)	434, 1118
XapI	RAATTY	3 cut(s)	401, 551, 700
XbaI	TCTAGA	2 cut(s)	709, 1064
XceI	RCATGY	1 cut(s)	1511
XmiI	GTMKAC	1 cut(s)	984
XspI	CTAG	5 cut(s)	18, 312, 710, 726, 1065

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.