Rh4DG047700
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
7691416 .. 7694634
3219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG047700.1

Sequence Viewer

Length: 1701 bp
ATGAAGGGCAGCAGCACTAGCGGTAGTCGGATTGCACCACGATTTTCCGCTGCTCGAAAATTCCAGTCGAGTTCCACCCAAGATGAAGAGATATCCTTGAACATTATAGGAGCAGTCTTTAAGTTCAAGAGCTCTGCAACCATAAAAGATCTCAAGACAATGTTATGTAACAAGTACGGATTTCCTGAGAATCATCTGGAGTTCTTCTTGGCTGGTCAGCCTCTCATGGACTTCCAAAGGGTAGTTGACTGTGGATTTCTTGAGTGCGCTGTTGATCTTGTTTTCAAGAATATTGTGGGAATGAAATTATTTGTCAAACTACCATCTAGTACCATTGAGATTGAGGGAAAAGCAGAAGATACCATCCAAAAAGTAAAAGCAATGATTCAGGCTAAGGAGAAGATTCAACCCGACAAATTCACACTCGTCTATGATGGAAAGTTCCTTGAGGAGGACATGACACTGGCCTCACTTCGTATGAAGAATGAGTCAACTCTTCATATTATTTTTAATCCAAGAGATGTGATGTCAGTTTTTGTGAAAACACCAGGTGGGAAGATTGTGGAATTTGAAGTTAAGGTCTTGTACACTGTCAGCGATGTCAAGCAGATTGTTGAGAGCTTTATGGGATGTTCTGTTGTTGATTATAGTTTGTTTTATGAAGGAAATGAGCTGCAAGATTTCAAGACCTTGGCTTTCTACAACATTGAAGAAAATTCCACTCTAGAGGTGAAGCCTTCTGGGATTCAGATATTTGTCAAGACATGGAGTGGAAAAACCATTACACTTAATGTGACACGATCAAATACTCTAAGAGAGGTGAAGGAGAAGATATTTTGTAAGATATCCTTGAACATTATAGGAACAGTCTTTAAGCTCAAGAGCTCTGCAACCATAAAAGATATCAAGACAATGTTACGTAACAAATACGGATTTCCTGAGAATCATCTGGAGTTCTTCTTGGCTGGTCAGCCTCTCATGGACTTCCAAAGGGTAGTCGACTGTGGATTTCTTGAATGCGCTGTTGATCTTGTTTTCAAGAACATTGTGGGAATGAAATTATTTGTCAAACTACCATCTAGTACCATTGAGATTGAGGGAAAAGCAGAAGATACCATCCAAAAAGTAAAAGCAATGATTCAGGCTAAGGAGAAGATTCAACCCGACCAATTCACACTCGTCTATGATGGAAAGTTCCTTGAGGAGGACATGACACTGGCCTCACTACGTATGAAGAATGAGTCGACTCTTTACATGGTTTCTGCTCCTAAATATAATCTTTCAATATCAGTGAAAACACCTTCAGGAGAGACTTTTAAGTTCAAGGTTAAACCCTTGTTCTCAGTCAGTGATCACAATCTGATCTATTCCGGAAATGAGCTTGAGGATCTGAAGACATTGGCTTTTTATGACATCGAGGATGAATCAGTATTAGAGGTCTCACCTCGCTCATTGCAGATATTTGTTAAAGTTTGTGATGGCAAAATTATTACTGTTGATGTGAAGCAGAGTGATAGTGTCAAAGAACTGAAGAGCAAGATTTTTCGCAAGCTTAATGTGTCGATGATGCCTTTTGATTTCTATAAGCTTGTGTTTCGCGGGGAACAGCTTGATGAAGTTCGGGATCTGGCAAGCTACAACATCGGAAGGGGCAGCAAACTTCGTTTGGTTCTCTCATCATCTGTTATTGTAAGGGATTAA

Protein Analysis

566

Amino Acids

64.12

Weight (kDa)

8.35

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 103 - 172 1.2e-16 Ubiquitin family
Rad60-SLD PF11976 110 - 169 6.4e-08 Ubiquitin-2 like Rad60 SUMO-like
Rad60-SLD PF11976 176 - 244 4.6e-07 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 178 - 244 3.9e-11 Ubiquitin family
ubiquitin PF00240 354 - 420 2.1e-16 Ubiquitin family
Rad60-SLD PF11976 361 - 417 4.1e-07 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 487 - 559 3e-13 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 999, 1244
AccII CGCG 1 cut(s) 1599
AccIII TCCGGA 1 cut(s) 1370
AciI CCGC 3 cut(s) 21, 48, 1599
AclWI GGATC 2 cut(s) 1395, 1632
AcsI RAATTY 4 cut(s) 59, 416, 566, 715
AcuI CTGAAG 3 cut(s) 1287, 1412, 1550
AdeI CACNNNGTG 1 cut(s) 551
AfaI GTAC 4 cut(s) 176, 331, 587, 1084
AfiI CCNNNNNNNGG 2 cut(s) 451, 1204
AjnI CCWGG 1 cut(s) 547
Alw21I GWGCWC 2 cut(s) 134, 887
Alw26I GTCTC 2 cut(s) 1304, 1444
AlwI GGATC 2 cut(s) 1395, 1632
Aor13HI TCCGGA 1 cut(s) 1370
AoxI GGCC 2 cut(s) 465, 1218
ApeKI GCWGC 5 cut(s) 9, 12, 50, 673, 1653
ApoI RAATTY 4 cut(s) 59, 416, 566, 715
AspLEI GCGC 2 cut(s) 269, 1022
AsuHPI GGTGA 3 cut(s) 742, 832, 1434
BanII GRGCYC 2 cut(s) 134, 887
BbsI GAAGAC 1 cut(s) 1400
Bbv12I GWGCWC 2 cut(s) 134, 887
BbvI GCAGC 5 cut(s) 21, 24, 37, 660, 1665
BccI CCATC 7 cut(s) 331, 371, 428, 1084, 1124, 1181, 1472
BciT130I CCWGG 1 cut(s) 549
BclI TGATCA 1 cut(s) 1351
BcoDI GTCTC 2 cut(s) 1304, 1444
BfaI CTAG 4 cut(s) 18, 327, 725, 1080
BglII AGATCT 1 cut(s) 148
BisI GCNGC 5 cut(s) 10, 13, 51, 674, 1654
BlsI GCNGC 5 cut(s) 11, 14, 52, 675, 1655
Bme1390I CCNGG 1 cut(s) 549
BmrFI CCNGG 1 cut(s) 549
BmsI GCATC 1 cut(s) 1557
BpiI GAAGAC 1 cut(s) 1400
BpmI CTGGAG 2 cut(s) 218, 971
Bpu10I CCTNAGC 2 cut(s) 393, 1146
BpuEI CTTGAG 6 cut(s) 137, 281, 467, 863, 1220, 1403
BsaAI YACGTR 2 cut(s) 920, 1229
BsaBI GATNNNNATC 1 cut(s) 1356
BsaI GGTCTC 1 cut(s) 1444
BsaJI CCNNGG 1 cut(s) 690
BsaWI WCCGGW 1 cut(s) 1370
Bsc4I CCNNNNNNNGG 2 cut(s) 451, 1204
Bse1I ACTGG 3 cut(s) 64, 468, 1221
Bse3DI GCAATG 3 cut(s) 387, 1140, 1451
Bse8I GATNNNNATC 1 cut(s) 1356
BseAI TCCGGA 1 cut(s) 1370
BseBI CCWGG 1 cut(s) 549
BseDI CCNNGG 1 cut(s) 690
BseGI GGATG 4 cut(s) 363, 635, 1116, 1426
BseJI GATNNNNATC 1 cut(s) 1356
BseLI CCNNNNNNNGG 2 cut(s) 451, 1204
BseMI GCAATG 3 cut(s) 387, 1140, 1451
BseMII CTCAG 3 cut(s) 177, 930, 1356
BseNI ACTGG 3 cut(s) 64, 468, 1221
BseRI GAGGAG 2 cut(s) 464, 1217
BseXI GCAGC 5 cut(s) 21, 24, 37, 660, 1665
Bsh1236I CGCG 1 cut(s) 1599
BshFI GGCC 2 cut(s) 467, 1220
BsiHKAI GWGCWC 2 cut(s) 134, 887
BsiSI CCGG 1 cut(s) 1371
BslI CCNNNNNNNGG 2 cut(s) 451, 1204
BsmAI GTCTC 2 cut(s) 1304, 1444
BsmI GAATGC 1 cut(s) 1022
BsnI GGCC 2 cut(s) 467, 1220
Bso31I GGTCTC 1 cut(s) 1444
Bsp1286I GDGCHC 2 cut(s) 134, 887
Bsp13I TCCGGA 1 cut(s) 1370
Bsp1407I TGTACA 1 cut(s) 585
Bsp143I GATC 8 cut(s) 148, 274, 800, 1027, 1351, 1362, 1387, 1624
BspACI CCGC 3 cut(s) 21, 48, 1599
BspANI GGCC 2 cut(s) 467, 1220
BspCNI CTCAG 3 cut(s) 178, 931, 1355
BspEI TCCGGA 1 cut(s) 1370
BspFNI CGCG 1 cut(s) 1599
BspPI GGATC 2 cut(s) 1395, 1632
BspQI GCTCTTC 1 cut(s) 1526
BspTNI GGTCTC 1 cut(s) 1444
BsrDI GCAATG 3 cut(s) 387, 1140, 1451
BsrGI TGTACA 1 cut(s) 585
BsrI ACTGG 3 cut(s) 64, 468, 1221
BssECI CCNNGG 1 cut(s) 690
BssMI GATC 8 cut(s) 148, 274, 800, 1027, 1351, 1362, 1387, 1624
BssT1I CCWWGG 1 cut(s) 690
Bst2UI CCWGG 1 cut(s) 549
Bst4CI ACNGT 5 cut(s) 251, 592, 868, 1004, 1495
Bst6I CTCTTC 3 cut(s) 81, 501, 1526
BstAUI TGTACA 1 cut(s) 585
BstBAI YACGTR 2 cut(s) 920, 1229
BstC8I GCNNGC 2 cut(s) 1550, 1633
BstDEI CTNAG 6 cut(s) 186, 393, 812, 939, 1146, 1342
BstENI CCTNNNNNAGG 2 cut(s) 449, 1202
BstF5I GGATG 4 cut(s) 363, 635, 1116, 1426
BstFNI CGCG 1 cut(s) 1599
BstHHI GCGC 2 cut(s) 269, 1022
BstKTI GATC 8 cut(s) 151, 277, 803, 1030, 1354, 1365, 1390, 1627
BstMAI GTCTC 2 cut(s) 1304, 1444
BstMBI GATC 8 cut(s) 148, 274, 800, 1027, 1351, 1362, 1387, 1624
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstNI CCWGG 1 cut(s) 549
BstSCI CCNGG 1 cut(s) 547
BstSNI TACGTA 2 cut(s) 920, 1229
BstUI CGCG 1 cut(s) 1599
BstV1I GCAGC 5 cut(s) 21, 24, 37, 660, 1665
BstV2I GAAGAC 1 cut(s) 1400
BstX2I RGATCY 3 cut(s) 148, 1387, 1624
BstYI RGATCY 3 cut(s) 148, 1387, 1624
BsuRI GGCC 2 cut(s) 467, 1220
BtgZI GCGATG 1 cut(s) 612
BtsCI GGATG 4 cut(s) 363, 635, 1116, 1426
BtsIMutI CAGTG 5 cut(s) 461, 588, 1214, 1296, 1354
Cac8I GCNNGC 2 cut(s) 1550, 1633
CfoI GCGC 2 cut(s) 269, 1022
CsiI ACCWGGT 1 cut(s) 547
Csp6I GTAC 4 cut(s) 175, 330, 586, 1083
CviAII CATG 6 cut(s) 226, 457, 765, 979, 1210, 1255
CviQI GTAC 4 cut(s) 175, 330, 586, 1083
DdeI CTNAG 6 cut(s) 186, 393, 812, 939, 1146, 1342
DpnI GATC 8 cut(s) 150, 276, 802, 1029, 1353, 1364, 1389, 1626
DpnII GATC 8 cut(s) 148, 274, 800, 1027, 1351, 1362, 1387, 1624
DraIII CACNNNGTG 1 cut(s) 551
Eam1104I CTCTTC 3 cut(s) 81, 501, 1526
EarI CTCTTC 3 cut(s) 81, 501, 1526
Ecl136II GAGCTC 2 cut(s) 132, 885
Eco105I TACGTA 2 cut(s) 920, 1229
Eco130I CCWWGG 1 cut(s) 690
Eco24I GRGCYC 2 cut(s) 134, 887
Eco31I GGTCTC 1 cut(s) 1444
Eco32I GATATC 3 cut(s) 93, 846, 904
Eco53kI GAGCTC 2 cut(s) 132, 885
Eco57I CTGAAG 3 cut(s) 1287, 1412, 1550
EcoICRI GAGCTC 2 cut(s) 132, 885
EcoNI CCTNNNNNAGG 2 cut(s) 449, 1202
EcoRII CCWGG 1 cut(s) 547
EcoRV GATATC 3 cut(s) 93, 846, 904
EcoT14I CCWWGG 1 cut(s) 690
EcoT38I GRGCYC 2 cut(s) 134, 887
ErhI CCWWGG 1 cut(s) 690
FaeI CATG 6 cut(s) 229, 460, 768, 982, 1213, 1258
FalI AAGNNNNNCTT 2 cut(s) 833, 865
FatI CATG 6 cut(s) 225, 456, 764, 978, 1209, 1254
FauI CCCGC 1 cut(s) 1592
FbaI TGATCA 1 cut(s) 1351
FblI GTMKAC 2 cut(s) 999, 1244
Fnu4HI GCNGC 5 cut(s) 10, 13, 51, 674, 1654
FokI GGATG 4 cut(s) 350, 642, 1103, 1433
FriOI GRGCYC 2 cut(s) 134, 887
Fsp4HI GCNGC 5 cut(s) 10, 13, 51, 674, 1654
FspBI CTAG 4 cut(s) 18, 327, 725, 1080
GlaI GCGC 2 cut(s) 268, 1021
GluI GCNGC 5 cut(s) 10, 13, 51, 674, 1654
GsuI CTGGAG 2 cut(s) 218, 971
HaeIII GGCC 2 cut(s) 467, 1220
HapII CCGG 1 cut(s) 1371
HhaI GCGC 2 cut(s) 269, 1022
Hin1II CATG 6 cut(s) 229, 460, 768, 982, 1213, 1258
Hin6I GCGC 2 cut(s) 267, 1020
HinP1I GCGC 2 cut(s) 267, 1020
HincII GTYRAC 4 cut(s) 247, 492, 1000, 1245
HindII GTYRAC 4 cut(s) 247, 492, 1000, 1245
HindIII AAGCTT 2 cut(s) 1550, 1586
HpaII CCGG 1 cut(s) 1371
HphI GGTGA 3 cut(s) 742, 832, 1434
Hpy166II GTNNAC 5 cut(s) 247, 492, 588, 1000, 1245
Hpy188I TCNGA 5 cut(s) 30, 750, 1362, 1392, 1646
Hpy8I GTNNAC 5 cut(s) 247, 492, 588, 1000, 1245
HpyAV CCTTC 5 cut(s) 656, 747, 817, 1311, 1641
HpyCH4III ACNGT 5 cut(s) 251, 592, 868, 1004, 1495
HpyCH4IV ACGT 2 cut(s) 919, 1228
HpyCH4V TGCA 5 cut(s) 35, 137, 676, 890, 1456
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 6 cut(s) 186, 393, 812, 939, 1146, 1342
HpySE526I ACGT 2 cut(s) 919, 1228
Hsp92II CATG 6 cut(s) 229, 460, 768, 982, 1213, 1258
HspAI GCGC 2 cut(s) 267, 1020
Kpn2I TCCGGA 1 cut(s) 1370
Ksp22I TGATCA 1 cut(s) 1351
Kzo9I GATC 8 cut(s) 148, 274, 800, 1027, 1351, 1362, 1387, 1624
LguI GCTCTTC 1 cut(s) 1526
LmnI GCTCC 2 cut(s) 110, 1270
Lsp1109I GCAGC 5 cut(s) 21, 24, 37, 660, 1665
LweI GCATC 1 cut(s) 1557
MabI ACCWGGT 1 cut(s) 547
MaeI CTAG 4 cut(s) 18, 327, 725, 1080
MaeII ACGT 2 cut(s) 919, 1228
MaeIII GTNAC 4 cut(s) 167, 793, 915, 920
MalI GATC 8 cut(s) 150, 276, 802, 1029, 1353, 1364, 1389, 1626
MboI GATC 8 cut(s) 148, 274, 800, 1027, 1351, 1362, 1387, 1624
MflI RGATCY 3 cut(s) 148, 1387, 1624
MhlI GDGCHC 2 cut(s) 134, 887
MluCI AATT 8 cut(s) 59, 305, 416, 566, 715, 1058, 1169, 1485
MlyI GAGTC 3 cut(s) 497, 1240, 1250
MmeI TCCRAC 1 cut(s) 8
MroI TCCGGA 1 cut(s) 1370
MspA1I CMGCKG 1 cut(s) 50
MspI CCGG 1 cut(s) 1371
MspR9I CCNGG 1 cut(s) 549
Mva1269I GAATGC 1 cut(s) 1022
MvaI CCWGG 1 cut(s) 549
MvnI CGCG 1 cut(s) 1599
MwoI GCNNNNNNNGC 1 cut(s) 18
NdeII GATC 8 cut(s) 148, 274, 800, 1027, 1351, 1362, 1387, 1624
NlaIII CATG 6 cut(s) 229, 460, 768, 982, 1213, 1258
NmuCI GTSAC 1 cut(s) 793
PciSI GCTCTTC 1 cut(s) 1526
PctI GAATGC 1 cut(s) 1022
PfeI GAWTC 8 cut(s) 190, 385, 403, 745, 943, 1138, 1156, 1424
PkrI GCNGC 5 cut(s) 11, 14, 52, 675, 1655
PleI GAGTC 3 cut(s) 496, 1240, 1249
PpsI GAGTC 3 cut(s) 496, 1240, 1249
Ppu21I YACGTR 2 cut(s) 920, 1229
Psp124BI GAGCTC 2 cut(s) 134, 887
Psp6I CCWGG 1 cut(s) 547
PspGI CCWGG 1 cut(s) 547
PsuI RGATCY 3 cut(s) 148, 1387, 1624
RsaI GTAC 4 cut(s) 176, 331, 587, 1084
RsaNI GTAC 4 cut(s) 175, 330, 586, 1083
SacI GAGCTC 2 cut(s) 134, 887
SalI GTCGAC 2 cut(s) 998, 1243
SapI GCTCTTC 1 cut(s) 1526
SatI GCNGC 5 cut(s) 10, 13, 51, 674, 1654
Sau3AI GATC 8 cut(s) 148, 274, 800, 1027, 1351, 1362, 1387, 1624
SchI GAGTC 3 cut(s) 497, 1240, 1250
ScrFI CCNGG 1 cut(s) 549
SduI GDGCHC 2 cut(s) 134, 887
SexAI ACCWGGT 1 cut(s) 547
SfaNI GCATC 1 cut(s) 1557
SmlI CTYRAG 6 cut(s) 152, 260, 446, 878, 1199, 1382
SmoI CTYRAG 6 cut(s) 152, 260, 446, 878, 1199, 1382
SnaBI TACGTA 2 cut(s) 920, 1229
Sse9I AATT 8 cut(s) 59, 305, 416, 566, 715, 1058, 1169, 1485
SsiI CCGC 3 cut(s) 21, 48, 1599
SspI AATATT 1 cut(s) 292
SspMI CTAG 4 cut(s) 18, 327, 725, 1080
SstI GAGCTC 2 cut(s) 134, 887
StyD4I CCNGG 1 cut(s) 547
StyI CCWWGG 1 cut(s) 690
TaaI ACNGT 5 cut(s) 251, 592, 868, 1004, 1495
TaiI ACGT 2 cut(s) 922, 1231
TaqI TCGA 6 cut(s) 55, 68, 999, 1244, 1416, 1562
TasI AATT 8 cut(s) 59, 305, 416, 566, 715, 1058, 1169, 1485
TatI WGTACW 1 cut(s) 585
TfiI GAWTC 8 cut(s) 190, 385, 403, 745, 943, 1138, 1156, 1424
TscAI CASTG 5 cut(s) 468, 595, 1221, 1296, 1354
TseFI GTSAC 1 cut(s) 793
TseI GCWGC 5 cut(s) 9, 12, 50, 673, 1653
Tsp45I GTSAC 1 cut(s) 793
TspGWI ACGGA 2 cut(s) 192, 945
TspRI CASTG 5 cut(s) 468, 595, 1221, 1296, 1354
XagI CCTNNNNNAGG 2 cut(s) 449, 1202
XapI RAATTY 4 cut(s) 59, 416, 566, 715
XbaI TCTAGA 1 cut(s) 724
XmiI GTMKAC 2 cut(s) 999, 1244
XspI CTAG 4 cut(s) 18, 327, 725, 1080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.