Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005187

Physical Location & Seq

Genomic Coordinates Reverse (-)

8677173 .. 8678931

Gene Structure 1759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG048000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTCCTTGAACATTATAGGAACAGTCTTTAAGCTCAAGAGCTCTGCAACCATAAAAGATCTCAAGACAATGTTATGTAACAAGTATGGATTTCCTGAGAATCATCTGGAGTTCTTCTTGGCTGGTCAGCCTCTCTTGGACTTCCAAAGGGTAGTTGACTGTGGATTTCTTGAGTGCGCTGTTGATCTTGTTTTCAAGAATATTGTGGGAATGAAATTATTTGTCAAACTACCATCTAGTACCATTGAGATTGAGGGAAAAGCAGAAGATACCATCCAAAAAGTGAAAGCAATGATTCAGGCTAAGGAGAAGATTCAACCCGACCAATACACACTCGTCTATGATGGAAAGTTCCTTGAGGAGGACATGACACTGGCCTCACTTCGTATGAAGAATGAGTCAACTCTTCATATTATTTTTAATCCAAGAGATGTGATGTCAGTTTTTGTGAAAACACCAGGTGGGAAGATTGTGGAATTTGAAGTTAAGGTCTTGTACACTGTCAGCGATGTCAAGCAGATTGTTGAGAGCTTTATAGGATGTTCTGTTGTTCATTATAGTTTGTTTTATGAAGGAAATGAGCTGCAAGATTTCAAGACCTTGGCTTTCTACAACATTAAAGAAAATTCCACTCTAGAGGTGAAGCCTTCTGGGATTCAGATATTTGTCAAGACATGGAGTGGAAAAACCATTACACTTGATGTGACACGATCAAATACTGTAAGAGAGGTGAAGGAGAAGATATTTTGTAAGGTTAGAGTGCCAGTTATTCGTCAGCGTATTGTATTTTCTGGAAAACGCCTTGAAGATAAATGCTCTCTTGCAAGTTACAACATTCAGAAACAGTCGACTCTCTACATGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0008017 GO:0008092 GO:0008150 GO:0008574 GO:0009524 GO:0009987 GO:0010970 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030705 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0047496 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0072384 GO:0099111 GO:0099518 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

288

Amino Acids

32.85

Weight (kDa)

8.84

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	73 - 142	8e-17	Ubiquitin family
Rad60-SLD	PF11976	80 - 139	3.1e-08	Ubiquitin-2 like Rad60 SUMO-like
Rad60-SLD	PF11976	146 - 214	2e-06	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	148 - 214	2.9e-12	Ubiquitin family
Rad60-SLD	PF11976	219 - 285	2.7e-08	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	221 - 288	6.9e-21	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005187)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03990 FvH4_4g03992
malus_domestica	MD16G1221600.v1.1
prunus_persica	Prupe.1G041900_v2.0.a1 Prupe.1G042000_v2.0.a1
pyrus_communis	pycom13g18970
rosa_chinensis	RchiOBHm_Chr4g0394221 RchiOBHm_Chr4g0394231 RchiOBHm_Chr4g0394241
rosa_laevigata	RLG00000009712
rosa_multiflora	Rmu_co7959593.1_g000001 Rmu_co8171576.1_g000001 Rmu_sc0000295.1_g000005 Rmu_sc0007246.1_g000006 Rmu_sc0007246.1_g000007 Rmu_sc0024069.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339280 Rroxscaffold_5G00339290
rosa_samantha	Rh4AG050900 Rh4AG051000 Rh4BG047800 Rh4BG047900 Rh4BG048000 Rh4CG054500 Rh4CG054600 Rh4CG054700 Rh4DG047500 Rh4DG047700
rosa_wichuraiana	Rw4G004050 Rw4G004060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	848
AcsI	RAATTY	2 cut(s)	476, 625
AdeI	CACNNNGTG	1 cut(s)	461
AfaI	GTAC	2 cut(s)	241, 497
AfiI	CCNNNNNNNGG	1 cut(s)	361
AgsI	TTSAA	6 cut(s)	10, 196, 317, 482, 595, 806
AjnI	CCWGG	1 cut(s)	457
AluBI	AGCT	4 cut(s)	34, 42, 531, 583
AluI	AGCT	4 cut(s)	34, 42, 531, 583
Alw21I	GWGCWC	1 cut(s)	44
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	1 cut(s)	583
ApoI	RAATTY	2 cut(s)	476, 625
AspLEI	GCGC	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	652, 742
BanII	GRGCYC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	570
BccI	CCATC	3 cut(s)	241, 281, 338
BciT130I	CCWGG	1 cut(s)	459
BfaI	CTAG	2 cut(s)	237, 635
BglII	AGATCT	1 cut(s)	58
BisI	GCNGC	1 cut(s)	584
BlsI	GCNGC	1 cut(s)	585
Bme1390I	CCNGG	1 cut(s)	459
BmrFI	CCNGG	1 cut(s)	459
BpmI	CTGGAG	1 cut(s)	128
Bpu10I	CCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	4 cut(s)	20, 47, 191, 377
BsaJI	CCNNGG	1 cut(s)	600
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
Bse1I	ACTGG	2 cut(s)	378, 764
Bse3DI	GCAATG	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	459
BseDI	CCNNGG	1 cut(s)	600
BseGI	GGATG	2 cut(s)	273, 545
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	2 cut(s)	378, 764
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	1 cut(s)	570
BshFI	GGCC	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	361
BsnI	GGCC	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp1407I	TGTACA	1 cut(s)	495
Bsp143I	GATC	3 cut(s)	58, 184, 710
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	1 cut(s)	88
BsrDI	GCAATG	1 cut(s)	297
BsrGI	TGTACA	1 cut(s)	495
BsrI	ACTGG	2 cut(s)	378, 764
BssECI	CCNNGG	1 cut(s)	600
BssMI	GATC	3 cut(s)	58, 184, 710
BssT1I	CCWWGG	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	459
Bst4CI	ACNGT	5 cut(s)	25, 161, 502, 721, 846
Bst6I	CTCTTC	1 cut(s)	411
BstAUI	TGTACA	1 cut(s)	495
BstDEI	CTNAG	2 cut(s)	96, 303
BstENI	CCTNNNNNAGG	1 cut(s)	359
BstF5I	GGATG	2 cut(s)	273, 545
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	3 cut(s)	61, 187, 713
BstMBI	GATC	3 cut(s)	58, 184, 710
BstNI	CCWGG	1 cut(s)	459
BstSCI	CCNGG	1 cut(s)	457
BstV1I	GCAGC	1 cut(s)	570
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	377
BtgZI	GCGATG	1 cut(s)	522
BtsCI	GGATG	2 cut(s)	273, 545
BtsIMutI	CAGTG	2 cut(s)	371, 498
CfoI	GCGC	1 cut(s)	179
CsiI	ACCWGGT	1 cut(s)	457
Csp6I	GTAC	2 cut(s)	240, 496
CviAII	CATG	3 cut(s)	367, 675, 859
CviQI	GTAC	2 cut(s)	240, 496
DdeI	CTNAG	2 cut(s)	96, 303
DpnI	GATC	3 cut(s)	60, 186, 712
DpnII	GATC	3 cut(s)	58, 184, 710
DraIII	CACNNNGTG	1 cut(s)	461
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Ecl136II	GAGCTC	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	600
Eco24I	GRGCYC	1 cut(s)	44
Eco53kI	GAGCTC	1 cut(s)	42
EcoICRI	GAGCTC	1 cut(s)	42
EcoNI	CCTNNNNNAGG	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	600
EcoT38I	GRGCYC	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	600
FaeI	CATG	3 cut(s)	370, 678, 862
FatI	CATG	3 cut(s)	366, 674, 858
FblI	GTMKAC	1 cut(s)	848
Fnu4HI	GCNGC	1 cut(s)	584
FokI	GGATG	2 cut(s)	260, 552
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	1 cut(s)	584
FspBI	CTAG	2 cut(s)	237, 635
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	1 cut(s)	584
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	377
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	3 cut(s)	370, 678, 862
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HincII	GTYRAC	3 cut(s)	157, 402, 849
HindII	GTYRAC	3 cut(s)	157, 402, 849
HinfI	GANTC	6 cut(s)	100, 295, 313, 398, 655, 850
HphI	GGTGA	2 cut(s)	652, 742
Hpy166II	GTNNAC	4 cut(s)	157, 402, 498, 849
Hpy188I	TCNGA	2 cut(s)	660, 840
Hpy8I	GTNNAC	4 cut(s)	157, 402, 498, 849
HpyAV	CCTTC	3 cut(s)	566, 657, 727
HpyCH4III	ACNGT	5 cut(s)	25, 161, 502, 721, 846
HpyCH4V	TGCA	3 cut(s)	47, 586, 824
HpyF3I	CTNAG	2 cut(s)	96, 303
Hsp92II	CATG	3 cut(s)	370, 678, 862
HspAI	GCGC	1 cut(s)	177
Kzo9I	GATC	3 cut(s)	58, 184, 710
Lsp1109I	GCAGC	1 cut(s)	570
MabI	ACCWGGT	1 cut(s)	457
MaeI	CTAG	2 cut(s)	237, 635
MaeIII	GTNAC	3 cut(s)	77, 703, 827
MalI	GATC	3 cut(s)	60, 186, 712
MboI	GATC	3 cut(s)	58, 184, 710
MboII	GAAGA	8 cut(s)	106, 278, 322, 398, 403, 478, 751, 818
MflI	RGATCY	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	44
MluCI	AATT	3 cut(s)	215, 476, 625
MlyI	GAGTC	2 cut(s)	407, 844
MnlI	CCTC	7 cut(s)	141, 247, 352, 355, 388, 631, 721
MseI	TTAA	4 cut(s)	30, 420, 486, 618
MspR9I	CCNGG	1 cut(s)	459
MvaI	CCWGG	1 cut(s)	459
NdeII	GATC	3 cut(s)	58, 184, 710
NlaIII	CATG	3 cut(s)	370, 678, 862
NmuCI	GTSAC	1 cut(s)	703
PfeI	GAWTC	4 cut(s)	100, 295, 313, 655
PkrI	GCNGC	1 cut(s)	585
PleI	GAGTC	2 cut(s)	406, 844
PpsI	GAGTC	2 cut(s)	406, 844
Psp124BI	GAGCTC	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	457
PspGI	CCWGG	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	58
RsaI	GTAC	2 cut(s)	241, 497
RsaNI	GTAC	2 cut(s)	240, 496
SacI	GAGCTC	1 cut(s)	44
SalI	GTCGAC	1 cut(s)	847
SaqAI	TTAA	4 cut(s)	30, 420, 486, 618
SatI	GCNGC	1 cut(s)	584
Sau3AI	GATC	3 cut(s)	58, 184, 710
SchI	GAGTC	2 cut(s)	407, 844
ScrFI	CCNGG	1 cut(s)	459
SduI	GDGCHC	1 cut(s)	44
SexAI	ACCWGGT	1 cut(s)	457
SmlI	CTYRAG	4 cut(s)	35, 62, 170, 356
SmoI	CTYRAG	4 cut(s)	35, 62, 170, 356
Sse9I	AATT	3 cut(s)	215, 476, 625
SspI	AATATT	1 cut(s)	202
SspMI	CTAG	2 cut(s)	237, 635
SstI	GAGCTC	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	457
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	5 cut(s)	25, 161, 502, 721, 846
TaqI	TCGA	1 cut(s)	848
TasI	AATT	3 cut(s)	215, 476, 625
TatI	WGTACW	1 cut(s)	495
TfiI	GAWTC	4 cut(s)	100, 295, 313, 655
Tru1I	TTAA	4 cut(s)	30, 420, 486, 618
Tru9I	TTAA	4 cut(s)	30, 420, 486, 618
TscAI	CASTG	2 cut(s)	378, 505
TseFI	GTSAC	1 cut(s)	703
TseI	GCWGC	1 cut(s)	583
Tsp45I	GTSAC	1 cut(s)	703
TspDTI	ATGAA	5 cut(s)	227, 398, 404, 542, 585
TspRI	CASTG	2 cut(s)	378, 505
XagI	CCTNNNNNAGG	1 cut(s)	359
XapI	RAATTY	2 cut(s)	476, 625
XbaI	TCTAGA	1 cut(s)	634
XmiI	GTMKAC	1 cut(s)	848
XspI	CTAG	2 cut(s)	237, 635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.