Rh4CG054600
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
10831337 .. 10831903
567 bp
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UTR
Exon/CDS
Intron
Rh4CG054600.1

Sequence Viewer

Length: 567 bp
ATGAAATTATTTGTCAAACTACCATCTAGTACCATTGAGATTGAGGGAAAAGCAGAAGATACCATCCAAAAAGTAAAAGCAATGATTCAGGCTAAGGAGAAGATTCAACCCGACCAATTCACACTCGTGTATGATGGAAAGTTTCTTGAGGAGGACATGACACTGGCCTCACTACGTATGAAGAATGAGTCGACTCTTTACATGGTTTCTGCTCCTAAATATATTCTTTCAATATCAGTGAAAGCACCTTCAGGAGAGACTTCTAAGTTCAAGGTTAAACCCTTGTTTACTGTTAGAGATGTCAAAACTATAGTTGAGAGCTATACAGGTTGCTCAGTCAGTGATCACAATCTGATCTATTCCGGAAATGAGCTTGAGGATCTGAAGACATTGGCTTTTTATGACATCGAGGATGAATCAGTATTAGAGGTCTCACCTCGGTCATTGCAGATATTTGTTAAAGTTTGTGATGTCAAAATTATTGCTGTTGATGTGAAGCAGAGTGATAGTGTCAAAGAACTGAAGAGCAAGATTTTTCGTAAGCTTTGTGTTGATGATGCCTTTTGA

Protein Analysis

188

Amino Acids

21.22

Weight (kDa)

5.61

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 3 - 70 3.1e-17 Ubiquitin family
Rad60-SLD PF11976 10 - 66 6.6e-08 Ubiquitin-2 like Rad60 SUMO-like
Rad60-SLD PF11976 77 - 144 5.4e-10 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 78 - 144 2e-12 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 191
AccIII TCCGGA 1 cut(s) 362
AclWI GGATC 1 cut(s) 387
AcuI CTGAAG 3 cut(s) 234, 404, 542
AfaI GTAC 1 cut(s) 31
AgsI TTSAA 3 cut(s) 107, 231, 271
AleI CACNNNNGTG 1 cut(s) 125
AluBI AGCT 3 cut(s) 321, 373, 544
AluI AGCT 3 cut(s) 321, 373, 544
Alw26I GTCTC 2 cut(s) 251, 436
AlwI GGATC 1 cut(s) 387
Aor13HI TCCGGA 1 cut(s) 362
AoxI GGCC 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 426
BauI CACGAG 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 392
BccI CCATC 3 cut(s) 31, 71, 128
BclI TGATCA 1 cut(s) 343
BcoDI GTCTC 2 cut(s) 251, 436
BfaI CTAG 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 309
BmsI GCATC 1 cut(s) 547
BpiI GAAGAC 1 cut(s) 392
Bpu10I CCTNAGC 1 cut(s) 93
BpuEI CTTGAG 2 cut(s) 167, 395
BsaAI YACGTR 1 cut(s) 176
BsaBI GATNNNNATC 1 cut(s) 348
BsaI GGTCTC 1 cut(s) 436
BsaJI CCNNGG 1 cut(s) 437
BsaWI WCCGGW 1 cut(s) 362
Bse1I ACTGG 1 cut(s) 168
Bse3DI GCAATG 2 cut(s) 87, 443
Bse8I GATNNNNATC 1 cut(s) 348
BseAI TCCGGA 1 cut(s) 362
BseDI CCNNGG 1 cut(s) 437
BseGI GGATG 2 cut(s) 63, 418
BseJI GATNNNNATC 1 cut(s) 348
BseMI GCAATG 2 cut(s) 87, 443
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 164
BshFI GGCC 1 cut(s) 167
BsiSI CCGG 1 cut(s) 363
BsmAI GTCTC 2 cut(s) 251, 436
BsnI GGCC 1 cut(s) 167
Bso31I GGTCTC 1 cut(s) 436
Bsp13I TCCGGA 1 cut(s) 362
Bsp143I GATC 3 cut(s) 343, 354, 379
BspANI GGCC 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 347
BspEI TCCGGA 1 cut(s) 362
BspPI GGATC 1 cut(s) 387
BspQI GCTCTTC 1 cut(s) 518
BspTNI GGTCTC 1 cut(s) 436
BsrDI GCAATG 2 cut(s) 87, 443
BsrI ACTGG 1 cut(s) 168
BssECI CCNNGG 1 cut(s) 437
BssMI GATC 3 cut(s) 343, 354, 379
BssSI CACGAG 1 cut(s) 125
Bst2BI CACGAG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 518
BstBAI YACGTR 1 cut(s) 176
BstDEI CTNAG 3 cut(s) 93, 264, 334
BstF5I GGATG 2 cut(s) 63, 418
BstKTI GATC 3 cut(s) 346, 357, 382
BstMAI GTCTC 2 cut(s) 251, 436
BstMBI GATC 3 cut(s) 343, 354, 379
BstSFI CTRYAG 1 cut(s) 309
BstSNI TACGTA 1 cut(s) 176
BstV2I GAAGAC 1 cut(s) 392
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BsuRI GGCC 1 cut(s) 167
BtsCI GGATG 2 cut(s) 63, 418
BtsIMutI CAGTG 3 cut(s) 161, 243, 346
Csp6I GTAC 1 cut(s) 30
CviAII CATG 2 cut(s) 157, 202
CviJI RGCY 6 cut(s) 92, 167, 321, 373, 395, 544
CviKI_1 RGCY 6 cut(s) 92, 167, 321, 373, 395, 544
CviQI GTAC 1 cut(s) 30
DdeI CTNAG 3 cut(s) 93, 264, 334
DpnI GATC 3 cut(s) 345, 356, 381
DpnII GATC 3 cut(s) 343, 354, 379
Eam1104I CTCTTC 1 cut(s) 518
EarI CTCTTC 1 cut(s) 518
Eco105I TACGTA 1 cut(s) 176
Eco31I GGTCTC 1 cut(s) 436
Eco57I CTGAAG 3 cut(s) 234, 404, 542
FaeI CATG 2 cut(s) 160, 205
FaiI YATR 8 cut(s) 132, 158, 179, 203, 222, 311, 324, 402
FatI CATG 2 cut(s) 156, 201
FbaI TGATCA 1 cut(s) 343
FblI GTMKAC 1 cut(s) 191
FokI GGATG 2 cut(s) 50, 425
FspBI CTAG 1 cut(s) 27
HaeIII GGCC 1 cut(s) 167
HapII CCGG 1 cut(s) 363
Hin1II CATG 2 cut(s) 160, 205
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 5 cut(s) 85, 103, 188, 193, 416
HpaII CCGG 1 cut(s) 363
HphI GGTGA 1 cut(s) 426
Hpy166II GTNNAC 2 cut(s) 192, 288
Hpy188I TCNGA 2 cut(s) 354, 384
Hpy188III TCNNGA 3 cut(s) 146, 252, 363
Hpy8I GTNNAC 2 cut(s) 192, 288
HpyAV CCTTC 1 cut(s) 258
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 1 cut(s) 448
HpyF3I CTNAG 3 cut(s) 93, 264, 334
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 2 cut(s) 160, 205
Kpn2I TCCGGA 1 cut(s) 362
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 3 cut(s) 343, 354, 379
LguI GCTCTTC 1 cut(s) 518
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 5 cut(s) 74, 149, 237, 312, 376
LweI GCATC 1 cut(s) 547
MaeI CTAG 1 cut(s) 27
MaeII ACGT 1 cut(s) 175
MalI GATC 3 cut(s) 345, 356, 381
MboI GATC 3 cut(s) 343, 354, 379
MboII GAAGA 5 cut(s) 68, 112, 193, 397, 535
MflI RGATCY 1 cut(s) 379
MluCI AATT 3 cut(s) 5, 116, 477
MlyI GAGTC 2 cut(s) 187, 197
MnlI CCTC 8 cut(s) 37, 142, 145, 178, 370, 403, 421, 447
MroI TCCGGA 1 cut(s) 362
MseI TTAA 2 cut(s) 276, 459
MslI CAYNNNNRTG 1 cut(s) 125
MspI CCGG 1 cut(s) 363
NdeII GATC 3 cut(s) 343, 354, 379
NlaIII CATG 2 cut(s) 160, 205
OliI CACNNNNGTG 1 cut(s) 125
PciSI GCTCTTC 1 cut(s) 518
PfeI GAWTC 3 cut(s) 85, 103, 416
PleI GAGTC 2 cut(s) 187, 196
PpsI GAGTC 2 cut(s) 187, 196
Ppu21I YACGTR 1 cut(s) 176
PsuI RGATCY 1 cut(s) 379
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
RseI CAYNNNNRTG 1 cut(s) 125
SalI GTCGAC 1 cut(s) 190
SapI GCTCTTC 1 cut(s) 518
SaqAI TTAA 2 cut(s) 276, 459
Sau3AI GATC 3 cut(s) 343, 354, 379
SchI GAGTC 2 cut(s) 187, 197
SetI ASST 9 cut(s) 178, 250, 276, 323, 331, 375, 432, 439, 546
SfaNI GCATC 1 cut(s) 547
SfcI CTRYAG 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 2 cut(s) 146, 374
SmoI CTYRAG 2 cut(s) 146, 374
SnaBI TACGTA 1 cut(s) 176
Sse9I AATT 3 cut(s) 5, 116, 477
SspMI CTAG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 1 cut(s) 178
TaqI TCGA 2 cut(s) 191, 408
TaqII GACCGA 1 cut(s) 429
TasI AATT 3 cut(s) 5, 116, 477
TfiI GAWTC 3 cut(s) 85, 103, 416
Tru1I TTAA 2 cut(s) 276, 459
Tru9I TTAA 2 cut(s) 276, 459
TscAI CASTG 3 cut(s) 168, 243, 346
TspDTI ATGAA 3 cut(s) 17, 194, 429
TspRI CASTG 3 cut(s) 168, 243, 346
XmiI GTMKAC 1 cut(s) 191
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.