Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005187

Physical Location & Seq

Genomic Coordinates Reverse (-)

14969351 .. 14970510

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g18970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGAATCACTGAGACTCCGTAGACCCTCACGCCGGGGATTCCGAACACTCCCATCAAGTTACTCTGATTCATCTCGTCAGCAGCAGAGGAATATACCGTGGAAGGTCTTGAAACAAATATGTGTGAGGATCAAGAAGTCTGTTGTAATTAAAAATTTGAAAGCCGAAAACCCTCAGGAGCGTCTCTTGGGTAATAATACTAATTGGCTTCACAATAGCCAAATACCAGCTGATCGAGGAACTCCGGAGGAACCAAGTTATGGTATATGTCACCCGAACTCAATGAGCATGAAAATATATGTGAAATTTCCGTCAAATCGGAAGACTGTTGTATTGGAAGCAAAAGGGTACAATATCATCAATGACATCAAATCCATGATCTGGTCCAAGGAGGGAGTCCAATCAGGCCAGTACTCTCTAGTTTGTAGAGGAAAACTACTTGAAGATTACCAGACATTGGCGTCACTTGACATTCGAAAAGAATCAACCCTTTATGTGATTTTCAATCCAAGAGATGTGATGTCGATTTTTGTGAAAATACCAAGCGGAAAGATTGTTAAATTTGAGGTTAAGGTCTTTTACACTGTCTGGGATATCAAAACGATTGTTGAGAGCTTTATCGGGTGTCCTGTTACCGATTGCAGTATGATCTATGCAGGAAATGAGCTGCAGGATTGCAAGACCTTGGATTTCTACCAGGTCGAAGAAAATTCCACTTTAGAAGTTCTGCCCTTTTGGTTTCAGATATTTATTAAGACGTGGAGTGGGAAAACCATTACACTTGACGTGACACGAAAGACTACTGTCAGAGAGGTGAAGGACAAGATATTTTGCAAGGTCAGAGTGCCGGTTCATGTTCAGAGTATTGTAGTTGCCGGTAAACGCCTTGTTGATGAATGCCGTCTTTCAAGTTACAACATTCAGAAAGGCTCCACTCTCCACATGGTTTTGGGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

320

Amino Acids

36.8

Weight (kDa)

9.57

Isoelectric Point (pI)

42.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	99 - 170	5.3e-08	Ubiquitin family
ubiquitin	PF00240	176 - 242	4.1e-09	Ubiquitin family
Rad60-SLD	PF11976	248 - 317	9e-07	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	249 - 317	8.7e-20	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005187)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03990 FvH4_4g03992
malus_domestica	MD16G1221600.v1.1
prunus_persica	Prupe.1G041900_v2.0.a1 Prupe.1G042000_v2.0.a1
pyrus_communis	pycom13g18970
rosa_chinensis	RchiOBHm_Chr4g0394221 RchiOBHm_Chr4g0394231 RchiOBHm_Chr4g0394241
rosa_laevigata	RLG00000009712
rosa_multiflora	Rmu_co7959593.1_g000001 Rmu_co8171576.1_g000001 Rmu_sc0000295.1_g000005 Rmu_sc0007246.1_g000006 Rmu_sc0007246.1_g000007 Rmu_sc0024069.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339280 Rroxscaffold_5G00339290
rosa_samantha	Rh4AG050900 Rh4AG051000 Rh4BG047800 Rh4BG047900 Rh4BG048000 Rh4CG054500 Rh4CG054600 Rh4CG054700 Rh4DG047500 Rh4DG047700
rosa_wichuraiana	Rw4G004050 Rw4G004060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	460
AccB7I	CCANNNNNTGG	3 cut(s)	260, 381, 457
AccI	GTMKAC	1 cut(s)	22
AccIII	TCCGGA	1 cut(s)	244
AciI	CCGC	1 cut(s)	546
AclWI	GGATC	1 cut(s)	137
AcsI	RAATTY	4 cut(s)	154, 305, 560, 709
AcyI	GRCGYC	1 cut(s)	461
AfaI	GTAC	2 cut(s)	350, 413
AfiI	CCNNNNNNNGG	4 cut(s)	33, 260, 381, 457
AgsI	TTSAA	5 cut(s)	112, 160, 443, 505, 909
AjiI	CACGTC	2 cut(s)	759, 787
AjnI	CCWGG	1 cut(s)	696
AluBI	AGCT	3 cut(s)	230, 615, 667
AluI	AGCT	3 cut(s)	230, 615, 667
Alw26I	GTCTC	2 cut(s)	7, 188
AlwI	GGATC	1 cut(s)	137
Aor13HI	TCCGGA	1 cut(s)	244
AoxI	GGCC	1 cut(s)	406
ApeKI	GCWGC	2 cut(s)	82, 667
ApoI	RAATTY	4 cut(s)	154, 305, 560, 709
AspS9I	GGNCC	1 cut(s)	384
AsuC2I	CCSGG	1 cut(s)	35
AsuHPI	GGTGA	2 cut(s)	263, 826
AsuII	TTCGAA	1 cut(s)	475
AvaII	GGWCC	1 cut(s)	384
AxyI	CCTNAGG	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	329
BbvI	GCAGC	2 cut(s)	94, 654
BccI	CCATC	1 cut(s)	61
BceAI	ACGGC	1 cut(s)	885
BciT130I	CCWGG	1 cut(s)	698
BcnI	CCSGG	1 cut(s)	35
BcoDI	GTCTC	2 cut(s)	7, 188
BfaI	CTAG	1 cut(s)	419
BfmI	CTRYAG	1 cut(s)	668
BisI	GCNGC	2 cut(s)	83, 668
BlsI	GCNGC	2 cut(s)	84, 669
BmcAI	AGTACT	1 cut(s)	413
Bme1390I	CCNGG	2 cut(s)	35, 698
Bme18I	GGWCC	1 cut(s)	384
BmgBI	CACGTC	2 cut(s)	759, 787
BmgT120I	GGNCC	1 cut(s)	384
BmiI	GGNNCC	2 cut(s)	252, 931
BmrFI	CCNGG	2 cut(s)	35, 698
BoxI	GACNNNNGTC	1 cut(s)	803
BpiI	GAAGAC	1 cut(s)	329
Bpu14I	TTCGAA	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	35
BsaHI	GRCGYC	1 cut(s)	461
BsaJI	CCNNGG	4 cut(s)	34, 98, 387, 684
BsaWI	WCCGGW	1 cut(s)	244
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	4 cut(s)	33, 260, 381, 457
Bse118I	RCCGGY	2 cut(s)	847, 875
Bse1I	ACTGG	1 cut(s)	409
Bse21I	CCTNAGG	1 cut(s)	174
BseAI	TCCGGA	1 cut(s)	244
BseBI	CCWGG	1 cut(s)	698
BseDI	CCNNGG	4 cut(s)	34, 98, 387, 684
BseLI	CCNNNNNNNGG	4 cut(s)	33, 260, 381, 457
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	409
BseXI	GCAGC	2 cut(s)	94, 654
BshFI	GGCC	1 cut(s)	408
BsiSI	CCGG	4 cut(s)	34, 245, 848, 876
BslI	CCNNNNNNNGG	4 cut(s)	33, 260, 381, 457
BsmAI	GTCTC	2 cut(s)	7, 188
BsmBI	CGTCTC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	902
BsnI	GGCC	1 cut(s)	408
Bsp119I	TTCGAA	1 cut(s)	475
Bsp13I	TCCGGA	1 cut(s)	244
Bsp143I	GATC	4 cut(s)	129, 232, 378, 648
BspACI	CCGC	1 cut(s)	546
BspANI	GGCC	1 cut(s)	408
BspCNI	CTCAG	1 cut(s)	187
BspEI	TCCGGA	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	252, 931
BspMAI	CTGCAG	1 cut(s)	672
BspPI	GGATC	1 cut(s)	137
BspT104I	TTCGAA	1 cut(s)	475
BsrFI	RCCGGY	2 cut(s)	847, 875
BsrI	ACTGG	1 cut(s)	409
BssAI	RCCGGY	2 cut(s)	847, 875
BssECI	CCNNGG	4 cut(s)	34, 98, 387, 684
BssMI	GATC	4 cut(s)	129, 232, 378, 648
BssNI	GRCGYC	1 cut(s)	461
BssT1I	CCWWGG	2 cut(s)	387, 684
Bst2UI	CCWGG	1 cut(s)	698
Bst4CI	ACNGT	4 cut(s)	99, 328, 586, 805
BstACI	GRCGYC	1 cut(s)	461
BstBI	TTCGAA	1 cut(s)	475
BstDEI	CTNAG	2 cut(s)	11, 174
BstDSI	CCRYGG	1 cut(s)	98
BstKTI	GATC	4 cut(s)	132, 235, 381, 651
BstMAI	GTCTC	2 cut(s)	7, 188
BstMBI	GATC	4 cut(s)	129, 232, 378, 648
BstNI	CCWGG	1 cut(s)	698
BstPAI	GACNNNNGTC	1 cut(s)	803
BstSCI	CCNGG	2 cut(s)	33, 696
BstSFI	CTRYAG	1 cut(s)	668
BstV1I	GCAGC	2 cut(s)	94, 654
BstV2I	GAAGAC	1 cut(s)	329
Bsu36I	CCTNAGG	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	408
BtgI	CCRYGG	1 cut(s)	98
BtrI	CACGTC	2 cut(s)	759, 787
BtsIMutI	CAGTG	2 cut(s)	8, 582
Cfr10I	RCCGGY	2 cut(s)	847, 875
Cfr13I	GGNCC	1 cut(s)	384
CseI	GACGC	2 cut(s)	170, 450
CsiI	ACCWGGT	1 cut(s)	696
Csp6I	GTAC	2 cut(s)	349, 412
CviAII	CATG	4 cut(s)	289, 376, 854, 943
CviJI	RGCY	8 cut(s)	164, 208, 219, 230, 408, 615, 667, 930
CviKI_1	RGCY	8 cut(s)	164, 208, 219, 230, 408, 615, 667, 930
CviQI	GTAC	2 cut(s)	349, 412
DdeI	CTNAG	2 cut(s)	11, 174
DpnI	GATC	4 cut(s)	131, 234, 380, 650
DpnII	GATC	4 cut(s)	129, 232, 378, 648
DrdI	GACNNNNNNGTC	1 cut(s)	460
DseDI	GACNNNNNNGTC	1 cut(s)	460
Eco130I	CCWWGG	2 cut(s)	387, 684
Eco32I	GATATC	1 cut(s)	595
Eco47I	GGWCC	1 cut(s)	384
Eco81I	CCTNAGG	1 cut(s)	174
EcoRII	CCWGG	1 cut(s)	696
EcoRV	GATATC	1 cut(s)	595
EcoT14I	CCWWGG	2 cut(s)	387, 684
ErhI	CCWWGG	2 cut(s)	387, 684
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	4 cut(s)	292, 379, 857, 946
FatI	CATG	4 cut(s)	288, 375, 853, 942
FblI	GTMKAC	1 cut(s)	22
Fnu4HI	GCNGC	2 cut(s)	83, 668
Fsp4HI	GCNGC	2 cut(s)	83, 668
FspBI	CTAG	1 cut(s)	419
GluI	GCNGC	2 cut(s)	83, 668
HaeIII	GGCC	1 cut(s)	408
HapII	CCGG	4 cut(s)	34, 245, 848, 876
HgaI	GACGC	2 cut(s)	170, 450
Hin1I	GRCGYC	1 cut(s)	461
Hin1II	CATG	4 cut(s)	292, 379, 857, 946
HinfI	GANTC	6 cut(s)	5, 15, 39, 68, 396, 482
HpaII	CCGG	4 cut(s)	34, 245, 848, 876
HphI	GGTGA	2 cut(s)	263, 826
Hpy166II	GTNNAC	2 cut(s)	23, 881
Hpy188I	TCNGA	8 cut(s)	44, 67, 321, 744, 809, 842, 861, 924
Hpy188III	TCNNGA	4 cut(s)	109, 133, 176, 245
Hpy8I	GTNNAC	2 cut(s)	23, 881
HpyAV	CCTTC	2 cut(s)	97, 811
HpyCH4III	ACNGT	4 cut(s)	99, 328, 586, 805
HpyCH4IV	ACGT	2 cut(s)	758, 786
HpyCH4V	TGCA	5 cut(s)	642, 656, 670, 678, 834
HpyF3I	CTNAG	2 cut(s)	11, 174
HpySE526I	ACGT	2 cut(s)	758, 786
Hsp92I	GRCGYC	1 cut(s)	461
Hsp92II	CATG	4 cut(s)	292, 379, 857, 946
Kpn2I	TCCGGA	1 cut(s)	244
Kzo9I	GATC	4 cut(s)	129, 232, 378, 648
LmnI	GCTCC	2 cut(s)	178, 935
Lsp1109I	GCAGC	2 cut(s)	94, 654
MabI	ACCWGGT	1 cut(s)	696
MaeI	CTAG	1 cut(s)	419
MaeII	ACGT	2 cut(s)	758, 786
MaeIII	GTNAC	6 cut(s)	59, 269, 462, 631, 787, 911
MalI	GATC	4 cut(s)	131, 234, 380, 650
MboI	GATC	4 cut(s)	129, 232, 378, 648
MboII	GAAGA	3 cut(s)	334, 455, 716
MluCI	AATT	6 cut(s)	147, 154, 202, 305, 560, 709
MlyI	GAGTC	2 cut(s)	9, 405
MroI	TCCGGA	1 cut(s)	244
MseI	TTAA	4 cut(s)	150, 558, 570, 753
MspA1I	CMGCKG	1 cut(s)	230
MspI	CCGG	4 cut(s)	34, 245, 848, 876
MspR9I	CCNGG	2 cut(s)	35, 698
Mva1269I	GAATGC	1 cut(s)	902
MvaI	CCWGG	1 cut(s)	698
NciI	CCSGG	1 cut(s)	35
NdeII	GATC	4 cut(s)	129, 232, 378, 648
NlaIII	CATG	4 cut(s)	292, 379, 857, 946
NlaIV	GGNNCC	2 cut(s)	252, 931
NmuCI	GTSAC	3 cut(s)	269, 462, 787
NspV	TTCGAA	1 cut(s)	475
PctI	GAATGC	1 cut(s)	902
PfeI	GAWTC	4 cut(s)	5, 39, 68, 482
PflMI	CCANNNNNTGG	3 cut(s)	260, 381, 457
PkrI	GCNGC	2 cut(s)	84, 669
PleI	GAGTC	2 cut(s)	9, 404
PpsI	GAGTC	2 cut(s)	9, 404
PshAI	GACNNNNGTC	1 cut(s)	803
Psp6I	CCWGG	1 cut(s)	696
PspGI	CCWGG	1 cut(s)	696
PspN4I	GGNNCC	2 cut(s)	252, 931
PspPI	GGNCC	1 cut(s)	384
PstI	CTGCAG	1 cut(s)	672
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	2 cut(s)	350, 413
RsaNI	GTAC	2 cut(s)	349, 412
SaqAI	TTAA	4 cut(s)	150, 558, 570, 753
SatI	GCNGC	2 cut(s)	83, 668
Sau3AI	GATC	4 cut(s)	129, 232, 378, 648
Sau96I	GGNCC	1 cut(s)	384
ScaI	AGTACT	1 cut(s)	413
SchI	GAGTC	2 cut(s)	9, 405
ScrFI	CCNGG	2 cut(s)	35, 698
SexAI	ACCWGGT	1 cut(s)	696
SfcI	CTRYAG	1 cut(s)	668
SfuI	TTCGAA	1 cut(s)	475
SinI	GGWCC	1 cut(s)	384
Sse9I	AATT	6 cut(s)	147, 154, 202, 305, 560, 709
SsiI	CCGC	1 cut(s)	546
SspMI	CTAG	1 cut(s)	419
StyD4I	CCNGG	2 cut(s)	33, 696
StyI	CCWWGG	2 cut(s)	387, 684
TaaI	ACNGT	4 cut(s)	99, 328, 586, 805
TaiI	ACGT	2 cut(s)	761, 789
TaqI	TCGA	4 cut(s)	235, 475, 524, 702
TasI	AATT	6 cut(s)	147, 154, 202, 305, 560, 709
TatI	WGTACW	1 cut(s)	411
TfiI	GAWTC	4 cut(s)	5, 39, 68, 482
Tru1I	TTAA	4 cut(s)	150, 558, 570, 753
Tru9I	TTAA	4 cut(s)	150, 558, 570, 753
TscAI	CASTG	2 cut(s)	15, 589
TseFI	GTSAC	3 cut(s)	269, 462, 787
TseI	GCWGC	2 cut(s)	82, 667
Tsp45I	GTSAC	3 cut(s)	269, 462, 787
TspDTI	ATGAA	4 cut(s)	60, 305, 842, 909
TspGWI	ACGGA	2 cut(s)	8, 300
TspRI	CASTG	2 cut(s)	15, 589
Van91I	CCANNNNNTGG	3 cut(s)	260, 381, 457
VpaK11BI	GGWCC	1 cut(s)	384
XapI	RAATTY	4 cut(s)	154, 305, 560, 709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	940
XmiI	GTMKAC	1 cut(s)	22
XspI	CTAG	1 cut(s)	419
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.