Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005187

Physical Location & Seq

Genomic Coordinates Reverse (-)

10832507 .. 10834573

Gene Structure 2067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG054700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGCAGAGCAGCAGCACTAGCGGTAGTCGGATTGCACCACGATTTTCCCCTGCTCGAAAATTCCAGTCGAGTTCCACCCAAGATGAAGAGATATCCTTGAACATTATAGGAACAGTCTTTAAGTTCAAGAGCTCTGCAACCATAAAAGATCTCAAGACAATGTTATGTAACAAGTACGGATTTCCTGAGAATCATCTGGAGTTCTTCTTGGCTGGTCAGCCTCTCATGGACTTCCAAAGGGTAGTTGACTGTGGATTTCTTGAGTGCGCTGTTGATCTTGTTTTCAAGAATATTGTGGGAATGAAATTATTTGTCAAACTACCATCTAGTACCATTGAGATTGAGGGAAAAGCAGAAGATACCATCCAAAAAGTAAAAGCAATGATTCAGGCTAAGGAGAAGATTCAACCCAACAAATTCACACTCGTCTATGATGGAAAGTTCCTTGAGGAGGACATGACACTGGCCTCACTTCGTATGAAGAATGAGTCAACTCTTCATATTATTTTTAATCCAAGAGATGTGATGTCAGTTTTTGTGAAAACACCAAGTGGGAAGATTGTGGAATTTGAAGTTAAGGTCTTGTACACTGTCAGCGATGTCAAGCAGATTGTTGAGAGCTTTATAGGATGTTCTGTTGTTGATTGTAGTTTGTTTTATGAAGGAAATGAGCTGCAAGATTTCAAGACCTTGGCTTTCTACAACATTGAAGAAAATTCCACTCTAGAGGTGAAGCCTTCTAGGATTCAGATATTTGTCAAGACATGGAGTGGAAAAACCATTACACTTGATGTGACACGATCAGATACTGTAAGAGAGGTGAAGGAGAAGATATTTTGTAAGGTTAGAGTGCCAGTTATTCGTCAGGGTATCATATTTTCTGGAAAACGCCTTGAAGATAAATGCTCTCTTGCAAGTTACAACATTCAGAAACAGTCGACTCTCCACATGGTTATGGCTTGGGGAAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0008017 GO:0008092 GO:0008150 GO:0008574 GO:0009524 GO:0009987 GO:0010970 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030705 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0047496 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0072384 GO:0099111 GO:0099518 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

324

Amino Acids

36.77

Weight (kDa)

8.81

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	103 - 172	5e-17	Ubiquitin family
Rad60-SLD	PF11976	110 - 169	1.6e-08	Ubiquitin-2 like Rad60 SUMO-like
Rad60-SLD	PF11976	176 - 244	4.7e-07	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	178 - 244	4.1e-12	Ubiquitin family
Rad60-SLD	PF11976	249 - 318	1.9e-08	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	251 - 319	3.6e-22	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005187)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03990 FvH4_4g03992
malus_domestica	MD16G1221600.v1.1
prunus_persica	Prupe.1G041900_v2.0.a1 Prupe.1G042000_v2.0.a1
pyrus_communis	pycom13g18970
rosa_chinensis	RchiOBHm_Chr4g0394221 RchiOBHm_Chr4g0394231 RchiOBHm_Chr4g0394241
rosa_laevigata	RLG00000009712
rosa_multiflora	Rmu_co7959593.1_g000001 Rmu_co8171576.1_g000001 Rmu_sc0000295.1_g000005 Rmu_sc0007246.1_g000006 Rmu_sc0007246.1_g000007 Rmu_sc0024069.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339280 Rroxscaffold_5G00339290
rosa_samantha	Rh4AG050900 Rh4AG051000 Rh4BG047800 Rh4BG047900 Rh4BG048000 Rh4CG054500 Rh4CG054600 Rh4CG054700 Rh4DG047500 Rh4DG047700
rosa_wichuraiana	Rw4G004050 Rw4G004060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	938
AciI	CCGC	1 cut(s)	21
AcsI	RAATTY	4 cut(s)	59, 416, 566, 715
AdeI	CACNNNGTG	1 cut(s)	551
AfaI	GTAC	3 cut(s)	176, 331, 587
AfiI	CCNNNNNNNGG	1 cut(s)	451
AgsI	TTSAA	8 cut(s)	100, 127, 286, 407, 572, 685, 710, 896
AluBI	AGCT	3 cut(s)	132, 621, 673
AluI	AGCT	3 cut(s)	132, 621, 673
Alw21I	GWGCWC	1 cut(s)	134
AlwNI	CAGNNNCTG	1 cut(s)	809
AoxI	GGCC	1 cut(s)	465
ApeKI	GCWGC	3 cut(s)	9, 12, 673
ApoI	RAATTY	4 cut(s)	59, 416, 566, 715
AspLEI	GCGC	1 cut(s)	269
AsuHPI	GGTGA	2 cut(s)	742, 832
BanII	GRGCYC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	21, 24, 660
BccI	CCATC	3 cut(s)	331, 371, 428
BfaI	CTAG	4 cut(s)	18, 327, 725, 741
BglII	AGATCT	1 cut(s)	148
BisI	GCNGC	3 cut(s)	10, 13, 674
BlsI	GCNGC	3 cut(s)	11, 14, 675
BpmI	CTGGAG	1 cut(s)	218
Bpu10I	CCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	3 cut(s)	137, 281, 467
BsaJI	CCNNGG	1 cut(s)	690
Bsc4I	CCNNNNNNNGG	1 cut(s)	451
Bse1I	ACTGG	3 cut(s)	64, 468, 854
Bse3DI	GCAATG	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	690
BseGI	GGATG	2 cut(s)	363, 635
BseLI	CCNNNNNNNGG	1 cut(s)	451
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	3 cut(s)	64, 468, 854
BseRI	GAGGAG	1 cut(s)	464
BseXI	GCAGC	3 cut(s)	21, 24, 660
BshFI	GGCC	1 cut(s)	467
BsiHKAI	GWGCWC	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	451
BsnI	GGCC	1 cut(s)	467
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp1407I	TGTACA	1 cut(s)	585
Bsp143I	GATC	3 cut(s)	148, 274, 800
BspACI	CCGC	1 cut(s)	21
BspANI	GGCC	1 cut(s)	467
BspCNI	CTCAG	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	387
BsrGI	TGTACA	1 cut(s)	585
BsrI	ACTGG	3 cut(s)	64, 468, 854
BssECI	CCNNGG	1 cut(s)	690
BssMI	GATC	3 cut(s)	148, 274, 800
BssT1I	CCWWGG	1 cut(s)	690
Bst4CI	ACNGT	5 cut(s)	115, 251, 592, 811, 936
Bst6I	CTCTTC	2 cut(s)	81, 501
BstAUI	TGTACA	1 cut(s)	585
BstDEI	CTNAG	2 cut(s)	186, 393
BstENI	CCTNNNNNAGG	1 cut(s)	449
BstF5I	GGATG	2 cut(s)	363, 635
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	3 cut(s)	151, 277, 803
BstMBI	GATC	3 cut(s)	148, 274, 800
BstMWI	GCNNNNNNNGC	1 cut(s)	18
BstV1I	GCAGC	3 cut(s)	21, 24, 660
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BsuRI	GGCC	1 cut(s)	467
BtgZI	GCGATG	1 cut(s)	612
BtsCI	GGATG	2 cut(s)	363, 635
BtsIMutI	CAGTG	2 cut(s)	461, 588
CaiI	CAGNNNCTG	1 cut(s)	809
CfoI	GCGC	1 cut(s)	269
Csp6I	GTAC	3 cut(s)	175, 330, 586
CviAII	CATG	4 cut(s)	226, 457, 765, 949
CviQI	GTAC	3 cut(s)	175, 330, 586
DdeI	CTNAG	2 cut(s)	186, 393
DpnI	GATC	3 cut(s)	150, 276, 802
DpnII	GATC	3 cut(s)	148, 274, 800
DraIII	CACNNNGTG	1 cut(s)	551
Eam1104I	CTCTTC	2 cut(s)	81, 501
EarI	CTCTTC	2 cut(s)	81, 501
Ecl136II	GAGCTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	690
Eco24I	GRGCYC	1 cut(s)	134
Eco32I	GATATC	1 cut(s)	93
Eco53kI	GAGCTC	1 cut(s)	132
EcoICRI	GAGCTC	1 cut(s)	132
EcoNI	CCTNNNNNAGG	1 cut(s)	449
EcoRV	GATATC	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	690
EcoT38I	GRGCYC	1 cut(s)	134
ErhI	CCWWGG	1 cut(s)	690
FaeI	CATG	4 cut(s)	229, 460, 768, 952
FatI	CATG	4 cut(s)	225, 456, 764, 948
FblI	GTMKAC	1 cut(s)	938
Fnu4HI	GCNGC	3 cut(s)	10, 13, 674
FokI	GGATG	2 cut(s)	350, 642
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	3 cut(s)	10, 13, 674
FspBI	CTAG	4 cut(s)	18, 327, 725, 741
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	3 cut(s)	10, 13, 674
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	467
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	4 cut(s)	229, 460, 768, 952
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HincII	GTYRAC	3 cut(s)	247, 492, 939
HindII	GTYRAC	3 cut(s)	247, 492, 939
HinfI	GANTC	6 cut(s)	190, 385, 403, 488, 745, 940
HphI	GGTGA	2 cut(s)	742, 832
Hpy166II	GTNNAC	4 cut(s)	247, 492, 588, 939
Hpy188I	TCNGA	4 cut(s)	30, 750, 805, 930
Hpy8I	GTNNAC	4 cut(s)	247, 492, 588, 939
HpyAV	CCTTC	3 cut(s)	656, 747, 817
HpyCH4III	ACNGT	5 cut(s)	115, 251, 592, 811, 936
HpyCH4V	TGCA	5 cut(s)	4, 35, 137, 676, 914
HpyF10VI	GCNNNNNNNGC	1 cut(s)	18
HpyF3I	CTNAG	2 cut(s)	186, 393
Hsp92II	CATG	4 cut(s)	229, 460, 768, 952
HspAI	GCGC	1 cut(s)	267
Kzo9I	GATC	3 cut(s)	148, 274, 800
Lsp1109I	GCAGC	3 cut(s)	21, 24, 660
MaeI	CTAG	4 cut(s)	18, 327, 725, 741
MaeIII	GTNAC	3 cut(s)	167, 793, 917
MalI	GATC	3 cut(s)	150, 276, 802
MboI	GATC	3 cut(s)	148, 274, 800
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	5 cut(s)	59, 305, 416, 566, 715
MlyI	GAGTC	2 cut(s)	497, 934
MmeI	TCCRAC	1 cut(s)	8
MnlI	CCTC	7 cut(s)	231, 337, 442, 445, 478, 721, 811
MseI	TTAA	3 cut(s)	120, 510, 576
MslI	CAYNNNNRTG	1 cut(s)	953
MwoI	GCNNNNNNNGC	1 cut(s)	18
NdeII	GATC	3 cut(s)	148, 274, 800
NlaIII	CATG	4 cut(s)	229, 460, 768, 952
NmuCI	GTSAC	1 cut(s)	793
PfeI	GAWTC	4 cut(s)	190, 385, 403, 745
PkrI	GCNGC	3 cut(s)	11, 14, 675
PleI	GAGTC	2 cut(s)	496, 934
PpsI	GAGTC	2 cut(s)	496, 934
Psp124BI	GAGCTC	1 cut(s)	134
PstNI	CAGNNNCTG	1 cut(s)	809
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	3 cut(s)	176, 331, 587
RsaNI	GTAC	3 cut(s)	175, 330, 586
RseI	CAYNNNNRTG	1 cut(s)	953
SacI	GAGCTC	1 cut(s)	134
SalI	GTCGAC	1 cut(s)	937
SaqAI	TTAA	3 cut(s)	120, 510, 576
SatI	GCNGC	3 cut(s)	10, 13, 674
Sau3AI	GATC	3 cut(s)	148, 274, 800
SchI	GAGTC	2 cut(s)	497, 934
SduI	GDGCHC	1 cut(s)	134
SetI	ASST	8 cut(s)	134, 582, 623, 675, 692, 732, 822, 846
SmiMI	CAYNNNNRTG	1 cut(s)	953
SmlI	CTYRAG	3 cut(s)	152, 260, 446
SmoI	CTYRAG	3 cut(s)	152, 260, 446
Sse9I	AATT	5 cut(s)	59, 305, 416, 566, 715
SsiI	CCGC	1 cut(s)	21
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	4 cut(s)	18, 327, 725, 741
SstI	GAGCTC	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	690
TaaI	ACNGT	5 cut(s)	115, 251, 592, 811, 936
TaqI	TCGA	3 cut(s)	55, 68, 938
TasI	AATT	5 cut(s)	59, 305, 416, 566, 715
TatI	WGTACW	1 cut(s)	585
TfiI	GAWTC	4 cut(s)	190, 385, 403, 745
Tru1I	TTAA	3 cut(s)	120, 510, 576
Tru9I	TTAA	3 cut(s)	120, 510, 576
TscAI	CASTG	2 cut(s)	468, 595
TseFI	GTSAC	1 cut(s)	793
TseI	GCWGC	3 cut(s)	9, 12, 673
Tsp45I	GTSAC	1 cut(s)	793
TspDTI	ATGAA	5 cut(s)	99, 317, 488, 494, 675
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	2 cut(s)	468, 595
XagI	CCTNNNNNAGG	1 cut(s)	449
XapI	RAATTY	4 cut(s)	59, 416, 566, 715
XbaI	TCTAGA	1 cut(s)	724
XmiI	GTMKAC	1 cut(s)	938
XspI	CTAG	4 cut(s)	18, 327, 725, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.