Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005187

Physical Location & Seq

Genomic Coordinates Reverse (-)

8675859 .. 8676692

Gene Structure 834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG047900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTTACGTAACAAATACGGATTTCCTGAGAATCATCTGGAGTTCTTCTTGGCTGGTCAGCCTCTCATGGACTTCCAAAGGGTAGTCGACTGTGGATTTCTTGAATGCGCTGTTGATCTTGTTTTCAAGAACATTGTGGGAATGAAATTATTTGTCAAACTACCATCTAGTACCATTGAGATTGAGGGAAAAGCAGAAGATACCATCCAAAAAGTAAAAGCAATGATTCAGGCTAAGGAGAAGATTCAACCCGACCAATTCACACTCGTCTATGATGGAAAGTTCCTTGAGGAGGACATGACACTGGCCTCACTACGTATGAAGAATGAGTCGACTCTTTACATGGTTTCTGCTCCTAAATATATTCTTTCAATATCAGTGAAAGCACCTTCAGGAGAGACTTCTAAGTTCAAGGTTAAACCCTTGTTTACTGTTAGAGATGTCAAAACTATAGTTGAGAGCTATACAGGTTGCTCAGTTAGTGATCACAATCTGATCTATTCCGGAAATGAGCTTGAGGATCTGAAGACATTGGCTTTTTATGACATCGAGGATGAATCAGTATTAGAGGTCTCACCTCGCTCATTGCAGATATTTGTTAAAGTTTGTGATGGCAAAATTATTGCTGTTGATGTGAAGCAGAGTGATAGTATCAAAGAACTGAAGAGCAAGATTTTTCGTAAGCTTTATGTGTCAATGATGCCTTTTGATTTCTATAAGCTTGTGTTTCGCTGGGAACAGTTTGATGAAGTTCGGGATCTGGCAAGCTACAACATCCAAAGAGGCAGCAAATTTCGTTTGGTTCTCTCATCATCTGTTATTGTAAGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0008017 GO:0008092 GO:0008150 GO:0008574 GO:0009524 GO:0009987 GO:0010970 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030705 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0047496 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0072384 GO:0099111 GO:0099518 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

277

Amino Acids

31.77

Weight (kDa)

6.24

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	50 - 116	6.7e-17	Ubiquitin family
Rad60-SLD	PF11976	57 - 113	1.4e-07	Ubiquitin-2 like Rad60 SUMO-like
Rad60-SLD	PF11976	124 - 191	1.2e-09	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	125 - 191	4.3e-12	Ubiquitin family
ubiquitin	PF00240	198 - 270	4.4e-08	Ubiquitin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005187)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03990 FvH4_4g03992
malus_domestica	MD16G1221600.v1.1
prunus_persica	Prupe.1G041900_v2.0.a1 Prupe.1G042000_v2.0.a1
pyrus_communis	pycom13g18970
rosa_chinensis	RchiOBHm_Chr4g0394221 RchiOBHm_Chr4g0394231 RchiOBHm_Chr4g0394241
rosa_laevigata	RLG00000009712
rosa_multiflora	Rmu_co7959593.1_g000001 Rmu_co8171576.1_g000001 Rmu_sc0000295.1_g000005 Rmu_sc0007246.1_g000006 Rmu_sc0007246.1_g000007 Rmu_sc0024069.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339280 Rroxscaffold_5G00339290
rosa_samantha	Rh4AG050900 Rh4AG051000 Rh4BG047800 Rh4BG047900 Rh4BG048000 Rh4CG054500 Rh4CG054600 Rh4CG054700 Rh4DG047500 Rh4DG047700
rosa_wichuraiana	Rw4G004050 Rw4G004060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	87, 332
AccIII	TCCGGA	1 cut(s)	503
AclWI	GGATC	2 cut(s)	528, 765
AcsI	RAATTY	1 cut(s)	791
AcuI	CTGAAG	3 cut(s)	375, 545, 683
AfaI	GTAC	1 cut(s)	172
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	5 cut(s)	104, 127, 248, 372, 412
AluBI	AGCT	5 cut(s)	462, 514, 685, 721, 768
AluI	AGCT	5 cut(s)	462, 514, 685, 721, 768
Alw26I	GTCTC	2 cut(s)	392, 577
AlwI	GGATC	2 cut(s)	528, 765
Aor13HI	TCCGGA	1 cut(s)	503
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	1 cut(s)	786
ApoI	RAATTY	1 cut(s)	791
AspLEI	GCGC	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	567
BbsI	GAAGAC	1 cut(s)	533
BbvI	GCAGC	1 cut(s)	798
BccI	CCATC	4 cut(s)	172, 212, 269, 605
BclI	TGATCA	1 cut(s)	484
BcoDI	GTCTC	2 cut(s)	392, 577
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	450
BisI	GCNGC	1 cut(s)	787
BlsI	GCNGC	1 cut(s)	788
BmsI	GCATC	1 cut(s)	690
BpiI	GAAGAC	1 cut(s)	533
BpmI	CTGGAG	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	234
BpuEI	CTTGAG	2 cut(s)	308, 536
BsaAI	YACGTR	2 cut(s)	8, 317
BsaBI	GATNNNNATC	1 cut(s)	489
BsaI	GGTCTC	1 cut(s)	577
BsaWI	WCCGGW	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	309
Bse3DI	GCAATG	2 cut(s)	228, 584
Bse8I	GATNNNNATC	1 cut(s)	489
BseAI	TCCGGA	1 cut(s)	503
BseGI	GGATG	3 cut(s)	204, 559, 774
BseJI	GATNNNNATC	1 cut(s)	489
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMI	GCAATG	2 cut(s)	228, 584
BseMII	CTCAG	2 cut(s)	18, 489
BseNI	ACTGG	1 cut(s)	309
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	798
BseYI	CCCAGC	1 cut(s)	732
BshFI	GGCC	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	504
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	2 cut(s)	392, 577
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	308
Bso31I	GGTCTC	1 cut(s)	577
Bsp13I	TCCGGA	1 cut(s)	503
Bsp143I	GATC	5 cut(s)	115, 484, 495, 520, 757
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	2 cut(s)	19, 488
BspEI	TCCGGA	1 cut(s)	503
BspPI	GGATC	2 cut(s)	528, 765
BspQI	GCTCTTC	1 cut(s)	659
BspTNI	GGTCTC	1 cut(s)	577
BsrDI	GCAATG	2 cut(s)	228, 584
BsrI	ACTGG	1 cut(s)	309
BssMI	GATC	5 cut(s)	115, 484, 495, 520, 757
Bst4CI	ACNGT	3 cut(s)	92, 433, 741
Bst6I	CTCTTC	1 cut(s)	659
BstBAI	YACGTR	2 cut(s)	8, 317
BstC8I	GCNNGC	1 cut(s)	766
BstDEI	CTNAG	4 cut(s)	27, 234, 405, 475
BstENI	CCTNNNNNAGG	1 cut(s)	290
BstF5I	GGATG	3 cut(s)	204, 559, 774
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	5 cut(s)	118, 487, 498, 523, 760
BstMAI	GTCTC	2 cut(s)	392, 577
BstMBI	GATC	5 cut(s)	115, 484, 495, 520, 757
BstSFI	CTRYAG	1 cut(s)	450
BstSNI	TACGTA	2 cut(s)	8, 317
BstV1I	GCAGC	1 cut(s)	798
BstV2I	GAAGAC	1 cut(s)	533
BstX2I	RGATCY	2 cut(s)	520, 757
BstYI	RGATCY	2 cut(s)	520, 757
BsuRI	GGCC	1 cut(s)	308
BtsCI	GGATG	3 cut(s)	204, 559, 774
BtsIMutI	CAGTG	2 cut(s)	302, 384
Cac8I	GCNNGC	1 cut(s)	766
CfoI	GCGC	1 cut(s)	110
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	3 cut(s)	67, 298, 343
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	4 cut(s)	27, 234, 405, 475
DpnI	GATC	5 cut(s)	117, 486, 497, 522, 759
DpnII	GATC	5 cut(s)	115, 484, 495, 520, 757
Eam1104I	CTCTTC	1 cut(s)	659
EarI	CTCTTC	1 cut(s)	659
Eco105I	TACGTA	2 cut(s)	8, 317
Eco31I	GGTCTC	1 cut(s)	577
Eco57I	CTGAAG	3 cut(s)	375, 545, 683
EcoNI	CCTNNNNNAGG	1 cut(s)	290
FaeI	CATG	3 cut(s)	70, 301, 346
FatI	CATG	3 cut(s)	66, 297, 342
FbaI	TGATCA	1 cut(s)	484
FblI	GTMKAC	2 cut(s)	87, 332
Fnu4HI	GCNGC	1 cut(s)	787
FokI	GGATG	3 cut(s)	191, 566, 761
Fsp4HI	GCNGC	1 cut(s)	787
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	787
GsaI	CCCAGC	1 cut(s)	736
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	308
HapII	CCGG	1 cut(s)	504
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	3 cut(s)	70, 301, 346
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	2 cut(s)	88, 333
HindII	GTYRAC	2 cut(s)	88, 333
HindIII	AAGCTT	2 cut(s)	683, 719
HinfI	GANTC	6 cut(s)	31, 226, 244, 329, 334, 557
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	1 cut(s)	567
Hpy166II	GTNNAC	3 cut(s)	88, 333, 429
Hpy188I	TCNGA	2 cut(s)	495, 525
Hpy188III	TCNNGA	7 cut(s)	26, 38, 101, 127, 393, 504, 755
Hpy8I	GTNNAC	3 cut(s)	88, 333, 429
HpyAV	CCTTC	1 cut(s)	399
HpyCH4III	ACNGT	3 cut(s)	92, 433, 741
HpyCH4IV	ACGT	2 cut(s)	7, 316
HpyCH4V	TGCA	1 cut(s)	589
HpyF3I	CTNAG	4 cut(s)	27, 234, 405, 475
HpySE526I	ACGT	2 cut(s)	7, 316
Hsp92II	CATG	3 cut(s)	70, 301, 346
HspAI	GCGC	1 cut(s)	108
Kpn2I	TCCGGA	1 cut(s)	503
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	5 cut(s)	115, 484, 495, 520, 757
LguI	GCTCTTC	1 cut(s)	659
LmnI	GCTCC	1 cut(s)	358
Lsp1109I	GCAGC	1 cut(s)	798
LweI	GCATC	1 cut(s)	690
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	2 cut(s)	7, 316
MaeIII	GTNAC	2 cut(s)	3, 8
MalI	GATC	5 cut(s)	117, 486, 497, 522, 759
MboI	GATC	5 cut(s)	115, 484, 495, 520, 757
MboII	GAAGA	6 cut(s)	37, 209, 253, 334, 538, 676
MflI	RGATCY	2 cut(s)	520, 757
MluCI	AATT	4 cut(s)	146, 257, 618, 791
MlyI	GAGTC	2 cut(s)	328, 338
MroI	TCCGGA	1 cut(s)	503
MseI	TTAA	3 cut(s)	417, 600, 832
MspI	CCGG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	110
NdeII	GATC	5 cut(s)	115, 484, 495, 520, 757
NlaIII	CATG	3 cut(s)	70, 301, 346
PciSI	GCTCTTC	1 cut(s)	659
PctI	GAATGC	1 cut(s)	110
PfeI	GAWTC	4 cut(s)	31, 226, 244, 557
PkrI	GCNGC	1 cut(s)	788
PleI	GAGTC	2 cut(s)	328, 337
PpsI	GAGTC	2 cut(s)	328, 337
Ppu21I	YACGTR	2 cut(s)	8, 317
PspFI	CCCAGC	1 cut(s)	732
PsuI	RGATCY	2 cut(s)	520, 757
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
SalI	GTCGAC	2 cut(s)	86, 331
SapI	GCTCTTC	1 cut(s)	659
SaqAI	TTAA	3 cut(s)	417, 600, 832
SatI	GCNGC	1 cut(s)	787
Sau3AI	GATC	5 cut(s)	115, 484, 495, 520, 757
SchI	GAGTC	2 cut(s)	328, 338
SfaNI	GCATC	1 cut(s)	690
SfcI	CTRYAG	1 cut(s)	450
SmlI	CTYRAG	2 cut(s)	287, 515
SmoI	CTYRAG	2 cut(s)	287, 515
SnaBI	TACGTA	2 cut(s)	8, 317
Sse9I	AATT	4 cut(s)	146, 257, 618, 791
SspMI	CTAG	1 cut(s)	168
TaaI	ACNGT	3 cut(s)	92, 433, 741
TaiI	ACGT	2 cut(s)	10, 319
TaqI	TCGA	3 cut(s)	87, 332, 549
TasI	AATT	4 cut(s)	146, 257, 618, 791
TfiI	GAWTC	4 cut(s)	31, 226, 244, 557
Tru1I	TTAA	3 cut(s)	417, 600, 832
Tru9I	TTAA	3 cut(s)	417, 600, 832
TscAI	CASTG	2 cut(s)	309, 384
TseI	GCWGC	1 cut(s)	786
TspDTI	ATGAA	4 cut(s)	158, 335, 570, 762
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	2 cut(s)	309, 384
XagI	CCTNNNNNAGG	1 cut(s)	290
XapI	RAATTY	1 cut(s)	791
XmiI	GTMKAC	2 cut(s)	87, 332
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.