Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024069.1

Orthogroup ID

OG0005187

Physical Location & Seq

Genomic Coordinates Forward (+)

53 .. 667

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024069.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atgattcaggctaaggagaagattcaacccgaccaattcacactcgtctatgatggaaagttccttgaggaggacatgacactggcctcactacgtatgaagaatgagtcgactctttacatggtttctgctcctaaatatattctttcaatatcagtgaaagcaccttcaggagagacttctaagttcaaggttaaacccttgtttactgttagagatgtcaaaactatagttgagagctatacaggttgctcagtcagtgatcaccatctgatctattccggaaatgagcttgaggatctgaagacattggctttttatgacatcgaggatgaatcagtattagaggtcttattacctcgctcattgcagatatttgttaaagtttgtgatggcaaaattattgctgttgatgtgaagcagagtgatagtgtcaaagaactgaagagcaagatttttcgtaagctttatgtgtcgatgatgccttttgatttctataagcttgtgtttcactgggaacagtttgatgaagttcggaatctggcaagctacaacatccaatggggcagcaaacttcgtttggttctctcatcatctgttattgtaagggattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0008017 GO:0008092 GO:0008150 GO:0008574 GO:0009524 GO:0009987 GO:0010970 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030705 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0047496 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0072384 GO:0099111 GO:0099518 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

204

Amino Acids

23.5

Weight (kDa)

6.33

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005187)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03990 FvH4_4g03992
malus_domestica	MD16G1221600.v1.1
prunus_persica	Prupe.1G041900_v2.0.a1 Prupe.1G042000_v2.0.a1
pyrus_communis	pycom13g18970
rosa_chinensis	RchiOBHm_Chr4g0394221 RchiOBHm_Chr4g0394231 RchiOBHm_Chr4g0394241
rosa_laevigata	RLG00000009712
rosa_multiflora	Rmu_co7959593.1_g000001 Rmu_co8171576.1_g000001 Rmu_sc0000295.1_g000005 Rmu_sc0007246.1_g000006 Rmu_sc0007246.1_g000007 Rmu_sc0024069.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339280 Rroxscaffold_5G00339290
rosa_samantha	Rh4AG050900 Rh4AG051000 Rh4BG047800 Rh4BG047900 Rh4BG048000 Rh4CG054500 Rh4CG054600 Rh4CG054700 Rh4DG047500 Rh4DG047700
rosa_wichuraiana	Rw4G004050 Rw4G004060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	110
AccIII	TCCGGA	1 cut(s)	281
AclWI	GGATC	1 cut(s)	306
AcuI	CTGAAG	3 cut(s)	153, 323, 464
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	3 cut(s)	26, 150, 190
AluBI	AGCT	5 cut(s)	240, 292, 466, 502, 549
AluI	AGCT	5 cut(s)	240, 292, 466, 502, 549
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	306
Aor13HI	TCCGGA	1 cut(s)	281
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	567
AsuHPI	GGTGA	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	579
BccI	CCATC	3 cut(s)	47, 276, 386
BclI	TGATCA	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	228
BisI	GCNGC	1 cut(s)	568
BlsI	GCNGC	1 cut(s)	569
BmrI	ACTGGG	1 cut(s)	523
BmsI	GCATC	1 cut(s)	471
BmuI	ACTGGG	1 cut(s)	523
BpiI	GAAGAC	1 cut(s)	311
Bpu10I	CCTNAGC	1 cut(s)	12
BpuEI	CTTGAG	2 cut(s)	86, 314
BsaAI	YACGTR	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	267
BsaWI	WCCGGW	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	2 cut(s)	87, 518
Bse3DI	GCAATG	1 cut(s)	365
Bse8I	GATNNNNATC	1 cut(s)	267
BseAI	TCCGGA	1 cut(s)	281
BseGI	GGATG	2 cut(s)	337, 555
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMI	GCAATG	1 cut(s)	365
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	2 cut(s)	87, 518
BseRI	GAGGAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	579
BshFI	GGCC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	86
Bsp13I	TCCGGA	1 cut(s)	281
Bsp143I	GATC	3 cut(s)	262, 273, 298
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	266
BspEI	TCCGGA	1 cut(s)	281
BspPI	GGATC	1 cut(s)	306
BspQI	GCTCTTC	1 cut(s)	440
BsrDI	GCAATG	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	87, 518
BssMI	GATC	3 cut(s)	262, 273, 298
Bst4CI	ACNGT	2 cut(s)	211, 522
Bst6I	CTCTTC	1 cut(s)	440
BstBAI	YACGTR	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	547
BstDEI	CTNAG	3 cut(s)	12, 183, 253
BstENI	CCTNNNNNAGG	1 cut(s)	68
BstF5I	GGATG	2 cut(s)	337, 555
BstKTI	GATC	3 cut(s)	265, 276, 301
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	3 cut(s)	262, 273, 298
BstSFI	CTRYAG	1 cut(s)	228
BstSNI	TACGTA	1 cut(s)	95
BstV1I	GCAGC	1 cut(s)	579
BstV2I	GAAGAC	1 cut(s)	311
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	2 cut(s)	337, 555
BtsIMutI	CAGTG	4 cut(s)	80, 162, 265, 511
Cac8I	GCNNGC	1 cut(s)	547
CviAII	CATG	2 cut(s)	76, 121
CviJI	RGCY	8 cut(s)	11, 86, 240, 292, 314, 466, 502, 549
CviKI_1	RGCY	8 cut(s)	11, 86, 240, 292, 314, 466, 502, 549
DdeI	CTNAG	3 cut(s)	12, 183, 253
DpnI	GATC	3 cut(s)	264, 275, 300
DpnII	GATC	3 cut(s)	262, 273, 298
Eam1104I	CTCTTC	1 cut(s)	440
EarI	CTCTTC	1 cut(s)	440
Eco105I	TACGTA	1 cut(s)	95
Eco57I	CTGAAG	3 cut(s)	153, 323, 464
EcoNI	CCTNNNNNAGG	1 cut(s)	68
FaeI	CATG	2 cut(s)	79, 124
FatI	CATG	2 cut(s)	75, 120
FbaI	TGATCA	1 cut(s)	262
FblI	GTMKAC	1 cut(s)	110
Fnu4HI	GCNGC	1 cut(s)	568
FokI	GGATG	2 cut(s)	344, 542
Fsp4HI	GCNGC	1 cut(s)	568
GluI	GCNGC	1 cut(s)	568
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	1 cut(s)	282
Hin1II	CATG	2 cut(s)	79, 124
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HindIII	AAGCTT	2 cut(s)	464, 500
HinfI	GANTC	6 cut(s)	4, 22, 107, 112, 335, 538
HpaII	CCGG	1 cut(s)	282
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	2 cut(s)	111, 207
Hpy188I	TCNGA	3 cut(s)	273, 303, 537
Hpy188III	TCNNGA	2 cut(s)	171, 282
Hpy8I	GTNNAC	2 cut(s)	111, 207
HpyAV	CCTTC	1 cut(s)	177
HpyCH4III	ACNGT	2 cut(s)	211, 522
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	1 cut(s)	370
HpyF3I	CTNAG	3 cut(s)	12, 183, 253
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	2 cut(s)	79, 124
Kpn2I	TCCGGA	1 cut(s)	281
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	3 cut(s)	262, 273, 298
LguI	GCTCTTC	1 cut(s)	440
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	6 cut(s)	68, 156, 231, 295, 499, 527
Lsp1109I	GCAGC	1 cut(s)	579
LweI	GCATC	1 cut(s)	471
MaeII	ACGT	1 cut(s)	94
MalI	GATC	3 cut(s)	264, 275, 300
MboI	GATC	3 cut(s)	262, 273, 298
MboII	GAAGA	4 cut(s)	31, 112, 316, 457
MflI	RGATCY	1 cut(s)	298
MluCI	AATT	2 cut(s)	35, 399
MlyI	GAGTC	2 cut(s)	106, 116
MnlI	CCTC	7 cut(s)	61, 64, 97, 289, 322, 340, 369
MroI	TCCGGA	1 cut(s)	281
MseI	TTAA	3 cut(s)	195, 381, 613
MspI	CCGG	1 cut(s)	282
NdeII	GATC	3 cut(s)	262, 273, 298
NlaIII	CATG	2 cut(s)	79, 124
PciSI	GCTCTTC	1 cut(s)	440
PfeI	GAWTC	4 cut(s)	4, 22, 335, 538
PkrI	GCNGC	1 cut(s)	569
PleI	GAGTC	2 cut(s)	106, 115
PpsI	GAGTC	2 cut(s)	106, 115
Ppu21I	YACGTR	1 cut(s)	95
PsuI	RGATCY	1 cut(s)	298
SalI	GTCGAC	1 cut(s)	109
SapI	GCTCTTC	1 cut(s)	440
SaqAI	TTAA	3 cut(s)	195, 381, 613
SatI	GCNGC	1 cut(s)	568
Sau3AI	GATC	3 cut(s)	262, 273, 298
SchI	GAGTC	2 cut(s)	106, 116
SfaNI	GCATC	1 cut(s)	471
SfcI	CTRYAG	1 cut(s)	228
SmlI	CTYRAG	2 cut(s)	65, 293
SmoI	CTYRAG	2 cut(s)	65, 293
SnaBI	TACGTA	1 cut(s)	95
Sse9I	AATT	2 cut(s)	35, 399
TaaI	ACNGT	2 cut(s)	211, 522
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	3 cut(s)	110, 327, 476
TasI	AATT	2 cut(s)	35, 399
TfiI	GAWTC	4 cut(s)	4, 22, 335, 538
Tru1I	TTAA	3 cut(s)	195, 381, 613
Tru9I	TTAA	3 cut(s)	195, 381, 613
TscAI	CASTG	4 cut(s)	87, 162, 265, 518
TseI	GCWGC	1 cut(s)	567
TspDTI	ATGAA	3 cut(s)	113, 348, 543
TspRI	CASTG	4 cut(s)	87, 162, 265, 518
XagI	CCTNNNNNAGG	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.