Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007246.1

Orthogroup ID

OG0005187

Physical Location & Seq

Genomic Coordinates Forward (+)

32652 .. 33458

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007246.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgttacgtaacaaatacggatttcctgagaatcatctggagttcttcttggctggtcagcctctcatggacttccaaagggtagtcgactgtggatttcttgaatgcgctgttgatcttgttttcaagaacattgtgggaatgaaattatttgtcaaactaccatctagtaccattgagattgagggaaaagcagaagataccatccaaaaagtaaaagcaatgattcaggctaaggagaagattcaacccgaccattacacactcgtctatgatggaaagttccttgaggaggacatgacactggcctcacttcgtatgaagaatgagtcaactcttcatattatttttaatccaagagatgtgatgtcagtttttgtgaaaacaccaggtgggaagattgtggaatttgaagttaaggtcttgtacactgtcagcgatgtcaagcagattgttgagagctttataggatgttctgttgttcattatagtttgttttatgaaggaaatgagctgcaagatttcaagaccttggctttctacaacattaaagaaaattccactctagaggtgaagccttctgggattcagatatttgtcaagacatggagtggaaaaaccattacacttgatgtgacacgatcaaatactgtaagagaggtgaaggagaagatattttgtaaggttagagtgccagttattcgtcagcgtattgtattttctggaaaacgccttgaagataaatgctctcttgcaagttacaacattcagaaacagtcgactctccacatggttatggcttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006928 GO:0007017 GO:0007018 GO:0008017 GO:0008092 GO:0008150 GO:0008574 GO:0009524 GO:0009987 GO:0010970 GO:0015630 GO:0015631 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030705 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0047496 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0072384 GO:0099111 GO:0099518 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

268

Amino Acids

30.8

Weight (kDa)

8.66

Isoelectric Point (pI)

39.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005187)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03990 FvH4_4g03992
malus_domestica	MD16G1221600.v1.1
prunus_persica	Prupe.1G041900_v2.0.a1 Prupe.1G042000_v2.0.a1
pyrus_communis	pycom13g18970
rosa_chinensis	RchiOBHm_Chr4g0394221 RchiOBHm_Chr4g0394231 RchiOBHm_Chr4g0394241
rosa_laevigata	RLG00000009712
rosa_multiflora	Rmu_co7959593.1_g000001 Rmu_co8171576.1_g000001 Rmu_sc0000295.1_g000005 Rmu_sc0007246.1_g000006 Rmu_sc0007246.1_g000007 Rmu_sc0024069.1_g000001
rosa_roxburghii	Rroxscaffold_5G00339280 Rroxscaffold_5G00339290
rosa_samantha	Rh4AG050900 Rh4AG051000 Rh4BG047800 Rh4BG047900 Rh4BG048000 Rh4CG054500 Rh4CG054600 Rh4CG054700 Rh4DG047500 Rh4DG047700
rosa_wichuraiana	Rw4G004050 Rw4G004060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	87, 779
AcsI	RAATTY	2 cut(s)	407, 556
AdeI	CACNNNGTG	1 cut(s)	392
AfaI	GTAC	2 cut(s)	172, 428
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	6 cut(s)	104, 127, 248, 413, 526, 737
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	2 cut(s)	462, 514
AluI	AGCT	2 cut(s)	462, 514
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	1 cut(s)	514
ApoI	RAATTY	2 cut(s)	407, 556
AspLEI	GCGC	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	583, 673
BbvI	GCAGC	1 cut(s)	501
BccI	CCATC	3 cut(s)	172, 212, 269
BciT130I	CCWGG	1 cut(s)	390
BfaI	CTAG	2 cut(s)	168, 566
BisI	GCNGC	1 cut(s)	515
BlsI	GCNGC	1 cut(s)	516
Bme1390I	CCNGG	1 cut(s)	390
BmrFI	CCNGG	1 cut(s)	390
BpmI	CTGGAG	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	531
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse1I	ACTGG	2 cut(s)	309, 695
Bse3DI	GCAATG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	531
BseGI	GGATG	2 cut(s)	204, 476
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	2 cut(s)	309, 695
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	501
BshFI	GGCC	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	308
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	2 cut(s)	115, 641
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	228
BsrGI	TGTACA	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	309, 695
BssECI	CCNNGG	1 cut(s)	531
BssMI	GATC	2 cut(s)	115, 641
BssT1I	CCWWGG	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	4 cut(s)	92, 433, 652, 777
Bst6I	CTCTTC	1 cut(s)	342
BstAUI	TGTACA	1 cut(s)	426
BstBAI	YACGTR	1 cut(s)	8
BstDEI	CTNAG	2 cut(s)	27, 234
BstENI	CCTNNNNNAGG	1 cut(s)	290
BstF5I	GGATG	2 cut(s)	204, 476
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	2 cut(s)	118, 644
BstMBI	GATC	2 cut(s)	115, 641
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	1 cut(s)	388
BstSNI	TACGTA	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	501
BsuRI	GGCC	1 cut(s)	308
BtgZI	GCGATG	1 cut(s)	453
BtsCI	GGATG	2 cut(s)	204, 476
BtsIMutI	CAGTG	2 cut(s)	302, 429
CfoI	GCGC	1 cut(s)	110
CsiI	ACCWGGT	1 cut(s)	388
Csp6I	GTAC	2 cut(s)	171, 427
CviAII	CATG	4 cut(s)	67, 298, 606, 790
CviJI	RGCY	9 cut(s)	53, 61, 233, 308, 462, 514, 536, 577, 800
CviKI_1	RGCY	9 cut(s)	53, 61, 233, 308, 462, 514, 536, 577, 800
CviQI	GTAC	2 cut(s)	171, 427
DdeI	CTNAG	2 cut(s)	27, 234
DpnI	GATC	2 cut(s)	117, 643
DpnII	GATC	2 cut(s)	115, 641
DraIII	CACNNNGTG	1 cut(s)	392
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco105I	TACGTA	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	531
EcoNI	CCTNNNNNAGG	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	388
EcoT14I	CCWWGG	1 cut(s)	531
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	4 cut(s)	70, 301, 609, 793
FatI	CATG	4 cut(s)	66, 297, 605, 789
FblI	GTMKAC	2 cut(s)	87, 779
Fnu4HI	GCNGC	1 cut(s)	515
FokI	GGATG	2 cut(s)	191, 483
Fsp4HI	GCNGC	1 cut(s)	515
FspBI	CTAG	2 cut(s)	168, 566
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	515
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	308
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	4 cut(s)	70, 301, 609, 793
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	3 cut(s)	88, 333, 780
HindII	GTYRAC	3 cut(s)	88, 333, 780
HinfI	GANTC	6 cut(s)	31, 226, 244, 329, 586, 781
HphI	GGTGA	2 cut(s)	583, 673
Hpy166II	GTNNAC	4 cut(s)	88, 333, 429, 780
Hpy188I	TCNGA	2 cut(s)	591, 771
Hpy188III	TCNNGA	8 cut(s)	26, 38, 101, 127, 526, 566, 601, 723
Hpy8I	GTNNAC	4 cut(s)	88, 333, 429, 780
HpyAV	CCTTC	3 cut(s)	497, 588, 658
HpyCH4III	ACNGT	4 cut(s)	92, 433, 652, 777
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	2 cut(s)	517, 755
HpyF3I	CTNAG	2 cut(s)	27, 234
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	4 cut(s)	70, 301, 609, 793
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	115, 641
Lsp1109I	GCAGC	1 cut(s)	501
MabI	ACCWGGT	1 cut(s)	388
MaeI	CTAG	2 cut(s)	168, 566
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	4 cut(s)	3, 8, 634, 758
MalI	GATC	2 cut(s)	117, 643
MboI	GATC	2 cut(s)	115, 641
MboII	GAAGA	8 cut(s)	37, 209, 253, 329, 334, 409, 682, 749
MluCI	AATT	3 cut(s)	146, 407, 556
MlyI	GAGTC	2 cut(s)	338, 775
MnlI	CCTC	7 cut(s)	72, 178, 283, 286, 319, 562, 652
MseI	TTAA	3 cut(s)	351, 417, 549
MslI	CAYNNNNRTG	1 cut(s)	794
MspR9I	CCNGG	1 cut(s)	390
Mva1269I	GAATGC	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	390
NdeII	GATC	2 cut(s)	115, 641
NlaIII	CATG	4 cut(s)	70, 301, 609, 793
NmuCI	GTSAC	1 cut(s)	634
PctI	GAATGC	1 cut(s)	110
PfeI	GAWTC	4 cut(s)	31, 226, 244, 586
PkrI	GCNGC	1 cut(s)	516
PleI	GAGTC	2 cut(s)	337, 775
PpsI	GAGTC	2 cut(s)	337, 775
Ppu21I	YACGTR	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
RsaI	GTAC	2 cut(s)	172, 428
RsaNI	GTAC	2 cut(s)	171, 427
RseI	CAYNNNNRTG	1 cut(s)	794
SalI	GTCGAC	2 cut(s)	86, 778
SaqAI	TTAA	3 cut(s)	351, 417, 549
SatI	GCNGC	1 cut(s)	515
Sau3AI	GATC	2 cut(s)	115, 641
SchI	GAGTC	2 cut(s)	338, 775
ScrFI	CCNGG	1 cut(s)	390
SetI	ASST	9 cut(s)	10, 394, 423, 464, 516, 533, 573, 663, 687
SexAI	ACCWGGT	1 cut(s)	388
SmiMI	CAYNNNNRTG	1 cut(s)	794
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SnaBI	TACGTA	1 cut(s)	8
Sse9I	AATT	3 cut(s)	146, 407, 556
SspMI	CTAG	2 cut(s)	168, 566
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	4 cut(s)	92, 433, 652, 777
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	2 cut(s)	87, 779
TasI	AATT	3 cut(s)	146, 407, 556
TatI	WGTACW	1 cut(s)	426
TfiI	GAWTC	4 cut(s)	31, 226, 244, 586
Tru1I	TTAA	3 cut(s)	351, 417, 549
Tru9I	TTAA	3 cut(s)	351, 417, 549
TscAI	CASTG	2 cut(s)	309, 436
TseFI	GTSAC	1 cut(s)	634
TseI	GCWGC	1 cut(s)	514
Tsp45I	GTSAC	1 cut(s)	634
TspDTI	ATGAA	5 cut(s)	158, 329, 335, 473, 516
TspGWI	ACGGA	1 cut(s)	33
TspRI	CASTG	2 cut(s)	309, 436
XagI	CCTNNNNNAGG	1 cut(s)	290
XapI	RAATTY	2 cut(s)	407, 556
XbaI	TCTAGA	1 cut(s)	565
XmiI	GTMKAC	2 cut(s)	87, 779
XspI	CTAG	2 cut(s)	168, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.