Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005535

Physical Location & Seq

Genomic Coordinates Forward (+)

18971316 .. 18972869

Gene Structure 1554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15321.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGACTCTCATGGTACATGTGTACCGCTTTGGAGTAATATTAATGGAGTTGATCATGGGTAGTAAGGCAATTGACGAAAGCCGTCCTTGGGAGAGTTGTCACCTAGTGGCATGGTTTTGTAGAAAGCTCATTAAGACAAAAACACTCCCAGAGACAGTTGATGCTCCAAGAATTAGTGTCAATGATGAAACAAGTTTTAGTATTTGCACTGTTGCTGAGCTTGCTGGTTATTGTAGCGCAAGGGAGCTATACCAAAGGCCTGACATAGCCAAGCCAGTTGACCTTCCCACGCCTGAGCCGGCTGTCCTCCCCAAGCCTGAGCTAGCTGACCTCCTCACACCTGAGCAGGCTGACCTCCCCATGCCTGAGGCTGTTGAGGTTAAGGCGGAAGTTGGGCGTCTAGAATTTCCTGCCCTTGAAAAAAAAAATGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

146

Amino Acids

16.27

Weight (kDa)

4.86

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15321
malus_domestica	MD00G1049600.v1.1 MD09G1266500.v1.1 MD16G1015100.v1.1
pyrus_communis	pycom16g01410
rosa_chinensis	RchiOBHm_Chr4g0442251 RchiOBHm_Chr4g0442481
rosa_laevigata	RLG00000006008
rosa_multiflora	Rmu_co8215092.1_g000001 Rmu_co8349657.1_g000001 Rmu_sc0000124.1_g000059 Rmu_sc0004133.1_g000015 Rmu_sc0005621.1_g000018 Rmu_sc0010284.1_g000001 Rmu_ssc0000204.1_g000052
rosa_roxburghii	Rroxscaffold_5G00357610 Rroxscaffold_5G00383310
rosa_rugosa	Rorug01G0093400 Rorug01G0093500 Rorug04G0340000 Rorug04G0341100
rosa_samantha	Rh4AG391500 Rh4AG391600 Rh4BG405200 Rh4CG420300 Rh4CG421800 Rh4DG177000 Rh4DG398400 Rh4DG400100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	25, 386
AcsI	RAATTY	1 cut(s)	404
AcyI	GRCGYC	1 cut(s)	397
AdeI	CACNNNGTG	1 cut(s)	106
AfaI	GTAC	2 cut(s)	15, 23
AfiI	CCNNNNNNNGG	1 cut(s)	88
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	1 cut(s)	419
AluBI	AGCT	5 cut(s)	127, 220, 247, 322, 326
AluI	AGCT	5 cut(s)	127, 220, 247, 322, 326
Alw26I	GTCTC	1 cut(s)	146
AoxI	GGCC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	404
AseI	ATTAAT	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	92
AsuNHI	GCTAGC	1 cut(s)	322
AxyI	CCTNAGG	1 cut(s)	366
BaeI	ACNNNNGTAYC	2 cut(s)	38, 38
BceAI	ACGGC	1 cut(s)	66
BclI	TGATCA	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	3 cut(s)	104, 323, 401
BlpI	GCTNAGC	1 cut(s)	216
BmsI	GCATC	1 cut(s)	151
BmtI	GCTAGC	1 cut(s)	326
Bpu10I	CCTNAGC	3 cut(s)	294, 318, 342
Bpu1102I	GCTNAGC	1 cut(s)	216
BsaHI	GRCGYC	1 cut(s)	397
BsaJI	CCNNGG	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse118I	RCCGGY	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	275
Bse21I	CCTNAGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	5 cut(s)	207, 285, 309, 333, 357
BseNI	ACTGG	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	323
BshFI	GGCC	1 cut(s)	259
BsiSI	CCGG	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	51
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	2 cut(s)	25, 386
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	5 cut(s)	208, 286, 310, 334, 358
BspOI	GCTAGC	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	275
BssAI	RCCGGY	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	1 cut(s)	51
BssNI	GRCGYC	1 cut(s)	397
BssT1I	CCWWGG	1 cut(s)	86
Bst4CI	ACNGT	2 cut(s)	157, 211
BstACI	GRCGYC	1 cut(s)	397
BstC8I	GCNNGC	4 cut(s)	222, 300, 324, 348
BstDEI	CTNAG	5 cut(s)	216, 294, 318, 342, 366
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	20
Bsu36I	CCTNAGG	1 cut(s)	366
BsuRI	GGCC	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	207
Cac8I	GCNNGC	4 cut(s)	222, 300, 324, 348
CfoI	GCGC	1 cut(s)	239
Cfr10I	RCCGGY	1 cut(s)	298
CseI	GACGC	1 cut(s)	386
Csp6I	GTAC	2 cut(s)	14, 22
CviAII	CATG	5 cut(s)	10, 17, 55, 111, 361
CviQI	GTAC	2 cut(s)	14, 22
DdeI	CTNAG	5 cut(s)	216, 294, 318, 342, 366
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
DraIII	CACNNNGTG	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	401
Eco130I	CCWWGG	1 cut(s)	86
Eco147I	AGGCCT	1 cut(s)	259
Eco81I	CCTNAGG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	86
FaeI	CATG	5 cut(s)	13, 20, 58, 114, 364
FaiI	YATR	7 cut(s)	11, 18, 56, 112, 250, 266, 362
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FatI	CATG	5 cut(s)	9, 16, 54, 110, 360
FbaI	TGATCA	1 cut(s)	51
FspBI	CTAG	3 cut(s)	104, 323, 401
GlaI	GCGC	1 cut(s)	238
HaeIII	GGCC	1 cut(s)	259
HapII	CCGG	1 cut(s)	299
HgaI	GACGC	1 cut(s)	386
HhaI	GCGC	1 cut(s)	239
Hin1I	GRCGYC	1 cut(s)	397
Hin1II	CATG	5 cut(s)	13, 20, 58, 114, 364
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	2 cut(s)	22, 280
Hpy188III	TCNNGA	1 cut(s)	401
Hpy8I	GTNNAC	2 cut(s)	22, 280
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	2 cut(s)	157, 211
HpyCH4V	TGCA	1 cut(s)	207
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	5 cut(s)	216, 294, 318, 342, 366
Hsp92I	GRCGYC	1 cut(s)	397
Hsp92II	CATG	5 cut(s)	13, 20, 58, 114, 364
HspAI	GCGC	1 cut(s)	237
KroI	GCCGGC	1 cut(s)	298
KroNI	GCCGGC	1 cut(s)	300
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	2 cut(s)	169, 244
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	3 cut(s)	104, 323, 401
MaeIII	GTNAC	1 cut(s)	98
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MfeI	CAATTG	1 cut(s)	69
MluCI	AATT	3 cut(s)	69, 171, 404
MnlI	CCTC	6 cut(s)	317, 341, 344, 361, 365, 370
MroNI	GCCGGC	1 cut(s)	298
MseI	TTAA	3 cut(s)	41, 132, 381
MspI	CCGG	1 cut(s)	299
MunI	CAATTG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	221
NaeI	GCCGGC	1 cut(s)	300
NdeII	GATC	1 cut(s)	51
NgoMIV	GCCGGC	1 cut(s)	298
NheI	GCTAGC	1 cut(s)	322
NlaIII	CATG	5 cut(s)	13, 20, 58, 114, 364
NmuCI	GTSAC	1 cut(s)	98
NspI	RCATGY	1 cut(s)	20
PceI	AGGCCT	1 cut(s)	259
PciI	ACATGT	1 cut(s)	16
PdiI	GCCGGC	1 cut(s)	300
PscI	ACATGT	1 cut(s)	16
PshBI	ATTAAT	1 cut(s)	41
RsaI	GTAC	2 cut(s)	15, 23
RsaNI	GTAC	2 cut(s)	14, 22
SaqAI	TTAA	3 cut(s)	41, 132, 381
Sau3AI	GATC	1 cut(s)	51
SfaNI	GCATC	1 cut(s)	151
Sse9I	AATT	3 cut(s)	69, 171, 404
SseBI	AGGCCT	1 cut(s)	259
SsiI	CCGC	2 cut(s)	25, 386
SspI	AATATT	1 cut(s)	39
SspMI	CTAG	3 cut(s)	104, 323, 401
StuI	AGGCCT	1 cut(s)	259
StyI	CCWWGG	1 cut(s)	86
TaaI	ACNGT	2 cut(s)	157, 211
TasI	AATT	3 cut(s)	69, 171, 404
Tru1I	TTAA	3 cut(s)	41, 132, 381
Tru9I	TTAA	3 cut(s)	41, 132, 381
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	1 cut(s)	201
TspRI	CASTG	1 cut(s)	214
VspI	ATTAAT	1 cut(s)	41
XapI	RAATTY	1 cut(s)	404
XbaI	TCTAGA	1 cut(s)	400
XceI	RCATGY	1 cut(s)	20
XspI	CTAG	3 cut(s)	104, 323, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.