Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005535

Physical Location & Seq

Genomic Coordinates Forward (+)

51387377 .. 51387998

Gene Structure 622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0341100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCTGAAGTGGTTTTCCAGATTGTTATGGGACAAGTTTCTTCATCACGCTCTCAGCCATCGAATGATGGCCAGGAACCATCCCGTGTTCATGCACCCAATGCAGAAAGGCAAAGTACAAATACCTCTCAAGGAGAGAGGAGACAATCAGTGATTTCTTCAGAAGCTATTTTATCGCAGTCTCACCCACTGGATGAAGATCAGGGACACACCCGTCTTCGTATACTAGATGCAGAAAGACAACGTAGAACTAATTATCAAAGAGAGAAGCGACAGTCATTGAATTCTTCACAACGAGCAGAAAGTTTAGCCCGAAGACGTGCTAATTACCACTTACGGCGACAGTCGCGAAATACAAGTGTGGAGAACAGAAGTATGACAAATCAACTAGAAGCAATGGCTGGTAACTTACTACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

139

Amino Acids

15.9

Weight (kDa)

11.1

Isoelectric Point (pI)

92.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15321
malus_domestica	MD00G1049600.v1.1 MD09G1266500.v1.1 MD16G1015100.v1.1
pyrus_communis	pycom16g01410
rosa_chinensis	RchiOBHm_Chr4g0442251 RchiOBHm_Chr4g0442481
rosa_laevigata	RLG00000006008
rosa_multiflora	Rmu_co8215092.1_g000001 Rmu_co8349657.1_g000001 Rmu_sc0000124.1_g000059 Rmu_sc0004133.1_g000015 Rmu_sc0005621.1_g000018 Rmu_sc0010284.1_g000001 Rmu_ssc0000204.1_g000052
rosa_roxburghii	Rroxscaffold_5G00357610 Rroxscaffold_5G00383310
rosa_rugosa	Rorug01G0093400 Rorug01G0093500 Rorug04G0340000 Rorug04G0341100
rosa_samantha	Rh4AG391500 Rh4AG391600 Rh4BG405200 Rh4CG420300 Rh4CG421800 Rh4DG177000 Rh4DG398400 Rh4DG400100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	223
AccII	CGCG	1 cut(s)	349
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	283
AcuI	CTGAAG	2 cut(s)	27, 144
AfaI	GTAC	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	283
AjiI	CACGTC	1 cut(s)	320
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
Alw26I	GTCTC	2 cut(s)	136, 186
AoxI	GGCC	1 cut(s)	70
ApoI	RAATTY	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	176
BalI	TGGCCA	1 cut(s)	72
BbsI	GAAGAC	2 cut(s)	209, 322
BccI	CCATC	3 cut(s)	62, 67, 88
BceAI	ACGGC	1 cut(s)	353
BciT130I	CCWGG	1 cut(s)	74
BcoDI	GTCTC	2 cut(s)	136, 186
BfaI	CTAG	2 cut(s)	227, 389
Bme1390I	CCNGG	1 cut(s)	74
BmgBI	CACGTC	1 cut(s)	320
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	220
BpiI	GAAGAC	2 cut(s)	209, 322
BpuEI	CTTGAG	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	198
Bse1I	ACTGG	1 cut(s)	195
Bse3DI	GCAATG	1 cut(s)	402
Bse8I	GATNNNNATC	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	74
BseGI	GGATG	2 cut(s)	80, 199
BseJI	GATNNNNATC	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	154
Bsh1236I	CGCG	1 cut(s)	349
BshFI	GGCC	1 cut(s)	72
BslFI	GGGAC	2 cut(s)	45, 219
BsmAI	GTCTC	2 cut(s)	136, 186
BsmFI	GGGAC	2 cut(s)	45, 219
BsnI	GGCC	1 cut(s)	72
Bsp143I	GATC	1 cut(s)	199
Bsp68I	TCGCGA	1 cut(s)	349
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	402
BsrI	ACTGG	1 cut(s)	195
BssMI	GATC	1 cut(s)	199
BssNAI	GTATAC	1 cut(s)	224
Bst1107I	GTATAC	1 cut(s)	224
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	2 cut(s)	276, 345
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	80, 199
BstFNI	CGCG	1 cut(s)	349
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	2 cut(s)	136, 186
BstMBI	GATC	1 cut(s)	199
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 346
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	72
BstUI	CGCG	1 cut(s)	349
BstV2I	GAAGAC	2 cut(s)	209, 322
BstZ17I	GTATAC	1 cut(s)	224
BsuRI	GGCC	1 cut(s)	72
BtrI	CACGTC	1 cut(s)	320
BtsCI	GGATG	2 cut(s)	80, 199
BtsIMutI	CAGTG	2 cut(s)	156, 188
BtuMI	TCGCGA	1 cut(s)	349
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	6 cut(s)	5, 58, 72, 167, 311, 401
CviKI_1	RGCY	6 cut(s)	5, 58, 72, 167, 311, 401
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
DrdI	GACNNNNNNGTC	1 cut(s)	213
DseDI	GACNNNNNNGTC	1 cut(s)	213
EaeI	YGGCCR	1 cut(s)	70
Eco57I	CTGAAG	2 cut(s)	27, 144
EcoRI	GAATTC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	72
FaeI	CATG	1 cut(s)	95
FaiI	YATR	4 cut(s)	29, 93, 224, 377
FaqI	GGGAC	2 cut(s)	45, 219
FatI	CATG	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	223
FokI	GGATG	2 cut(s)	67, 206
FspBI	CTAG	2 cut(s)	227, 389
HaeIII	GGCC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	2 cut(s)	19, 348
Hpy8I	GTNNAC	1 cut(s)	224
HpyCH4III	ACNGT	2 cut(s)	276, 345
HpyCH4IV	ACGT	2 cut(s)	244, 319
HpyCH4V	TGCA	3 cut(s)	95, 104, 233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 346
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	2 cut(s)	244, 319
Hsp92II	CATG	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	199
LpnPI	CCDG	6 cut(s)	32, 59, 86, 176, 188, 387
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	2 cut(s)	227, 389
MaeII	ACGT	2 cut(s)	244, 319
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	6 cut(s)	33, 150, 209, 209, 279, 327
MlsI	TGGCCA	1 cut(s)	72
MluCI	AATT	3 cut(s)	253, 283, 325
MluNI	TGGCCA	1 cut(s)	72
MnlI	CCTC	2 cut(s)	132, 136
Mox20I	TGGCCA	1 cut(s)	72
MscI	TGGCCA	1 cut(s)	72
Msp20I	TGGCCA	1 cut(s)	72
MspR9I	CCNGG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	74
MvnI	CGCG	1 cut(s)	349
MwoI	GCNNNNNNNGC	2 cut(s)	101, 346
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	78
NruI	TCGCGA	1 cut(s)	349
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	78
RruI	TCGCGA	1 cut(s)	349
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	74
SetI	ASST	4 cut(s)	128, 169, 247, 322
SfaNI	GCATC	1 cut(s)	220
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
Sse9I	AATT	3 cut(s)	253, 283, 325
SspMI	CTAG	2 cut(s)	227, 389
StyD4I	CCNGG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	276, 345
TaiI	ACGT	2 cut(s)	247, 322
TaqI	TCGA	1 cut(s)	62
TasI	AATT	3 cut(s)	253, 283, 325
TatI	WGTACW	1 cut(s)	116
TscAI	CASTG	2 cut(s)	156, 195
TspDTI	ATGAA	3 cut(s)	33, 80, 210
TspRI	CASTG	2 cut(s)	156, 195
XapI	RAATTY	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	223
XspI	CTAG	2 cut(s)	227, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.