Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005535

Physical Location & Seq

Genomic Coordinates Reverse (-)

15197153 .. 15197770

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0093400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCCTTGAGATATTTTGCAGTACTGACAGTAGTACTTGCCCTGGCCACTACTTCTAAAAGGGCCGTAGCAGATCCTGACATCCTTTCCGACTTTATAGTGCCGCAAAATAATACCAAAGTTAATGGAACATTTTTCACTTACACTAAATTCCGTGGACTATTTGATGGAGTTCCTGAAACCTTTAAGGTAACAAAAGCTGCCTTGACTGAGTTCCCTGCTCTTAACGGCCAAAGTGTGTCATATGCGGTGCTTCAATTTCCAGCAAATGGAGTAAACCCACCTCACACTCACCCTCGCTCAGCTGAACTTTTGTTCCTTGTTGCTGGTTCCTTGGATGTAGGGTTCGTCGACACAAAAAATGTTCTCTATAGTCAAAAGCTTCAAGTTGGAGACATCTTTGTGTTTCCAAAGGGACTAGTCCACTATCAGTACAACTCACAGCCCAACATGCCAGCCATTGCTGTTTCAGCATTTGGAAGTGCAAATGCCGGAACAGTTTCGGTGCCACTATCAGTGTTTGCTACTGAGATTGACGATGAAATCCTCGCCAAGTCATTCAAAACTGACGTTGATACCATTGAGAAGATCAAGGCTGGCCTTGCTCCTCATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

205

Amino Acids

22.13

Weight (kDa)

6.91

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	60 - 193	1.8e-33	Cupin
Cupin_2	PF07883	85 - 156	6.3e-09	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15321
malus_domestica	MD00G1049600.v1.1 MD09G1266500.v1.1 MD16G1015100.v1.1
pyrus_communis	pycom16g01410
rosa_chinensis	RchiOBHm_Chr4g0442251 RchiOBHm_Chr4g0442481
rosa_laevigata	RLG00000006008
rosa_multiflora	Rmu_co8215092.1_g000001 Rmu_co8349657.1_g000001 Rmu_sc0000124.1_g000059 Rmu_sc0004133.1_g000015 Rmu_sc0005621.1_g000018 Rmu_sc0010284.1_g000001 Rmu_ssc0000204.1_g000052
rosa_roxburghii	Rroxscaffold_5G00357610 Rroxscaffold_5G00383310
rosa_rugosa	Rorug01G0093400 Rorug01G0093500 Rorug04G0340000 Rorug04G0341100
rosa_samantha	Rh4AG391500 Rh4AG391600 Rh4BG405200 Rh4CG420300 Rh4CG421800 Rh4DG177000 Rh4DG398400 Rh4DG400100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	505
AccB7I	CCANNNNNTGG	1 cut(s)	269
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	2 cut(s)	104, 248
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	2 cut(s)	45, 229
AcsI	RAATTY	1 cut(s)	149
AfaI	GTAC	3 cut(s)	24, 36, 434
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	3 cut(s)	257, 386, 562
AhlI	ACTAGT	1 cut(s)	418
AjnI	CCWGG	1 cut(s)	42
AloI	GAACNNNNNNTCC	4 cut(s)	300, 329, 332, 361
AluBI	AGCT	3 cut(s)	200, 305, 382
AluI	AGCT	3 cut(s)	200, 305, 382
Alw26I	GTCTC	1 cut(s)	387
AlwI	GGATC	1 cut(s)	68
AlwNI	CAGNNNCTG	1 cut(s)	77
AoxI	GGCC	5 cut(s)	3, 45, 63, 229, 598
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	149
Asp700I	GAANNNNTTC	1 cut(s)	499
AspS9I	GGNCC	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	284
BalI	TGGCCA	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	505
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	1 cut(s)	161
BceAI	ACGGC	2 cut(s)	50, 244
BciT130I	CCWGG	1 cut(s)	44
BcoDI	GTCTC	1 cut(s)	387
BcuI	ACTAGT	1 cut(s)	418
BfaI	CTAG	1 cut(s)	419
BfmI	CTRYAG	1 cut(s)	370
BisI	GCNGC	2 cut(s)	104, 201
BlpI	GCTNAGC	1 cut(s)	301
BlsI	GCNGC	2 cut(s)	105, 202
BmcAI	AGTACT	2 cut(s)	24, 36
Bme1390I	CCNGG	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	63
BmiI	GGNNCC	2 cut(s)	331, 507
BmrFI	CCNGG	1 cut(s)	44
Bpu1102I	GCTNAGC	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	28
BsaJI	CCNNGG	3 cut(s)	42, 154, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse3DI	GCAATG	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	44
BseDI	CCNNGG	3 cut(s)	42, 154, 333
BseGI	GGATG	2 cut(s)	81, 343
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	3 cut(s)	201, 315, 519
BseRI	GAGGAG	1 cut(s)	597
BseXI	GCAGC	1 cut(s)	187
BshFI	GGCC	5 cut(s)	5, 47, 65, 231, 600
BshNI	GGYRCC	1 cut(s)	505
BsiSI	CCGG	1 cut(s)	492
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmAI	GTCTC	1 cut(s)	387
BsmFI	GGGAC	1 cut(s)	429
BsnI	GGCC	5 cut(s)	5, 47, 65, 231, 600
Bsp143I	GATC	2 cut(s)	73, 588
Bsp1720I	GCTNAGC	1 cut(s)	301
BspACI	CCGC	2 cut(s)	104, 248
BspANI	GGCC	5 cut(s)	5, 47, 65, 231, 600
BspCNI	CTCAG	3 cut(s)	202, 314, 520
BspLI	GGNNCC	2 cut(s)	331, 507
BspPI	GGATC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	505
BsrDI	GCAATG	1 cut(s)	459
BssECI	CCNNGG	3 cut(s)	42, 154, 333
BssMI	GATC	2 cut(s)	73, 588
BssT1I	CCWWGG	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	2 cut(s)	31, 499
BstC8I	GCNNGC	2 cut(s)	456, 598
BstDEI	CTNAG	3 cut(s)	210, 301, 528
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	2 cut(s)	81, 343
BstKTI	GATC	2 cut(s)	76, 591
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	2 cut(s)	73, 588
BstMWI	GCNNNNNNNGC	3 cut(s)	451, 470, 602
BstNI	CCWGG	1 cut(s)	44
BstNSI	RCATGY	1 cut(s)	454
BstSCI	CCNGG	1 cut(s)	42
BstSFI	CTRYAG	1 cut(s)	370
BstV1I	GCAGC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	5 cut(s)	5, 47, 65, 231, 600
BtgI	CCRYGG	1 cut(s)	154
BtsCI	GGATG	2 cut(s)	81, 343
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	2 cut(s)	456, 598
CaiI	CAGNNNCTG	1 cut(s)	77
Cfr13I	GGNCC	1 cut(s)	63
Csp6I	GTAC	3 cut(s)	23, 35, 433
CviAII	CATG	1 cut(s)	451
CviQI	GTAC	3 cut(s)	23, 35, 433
DdeI	CTNAG	3 cut(s)	210, 301, 528
DpnI	GATC	2 cut(s)	75, 590
DpnII	GATC	2 cut(s)	73, 588
EaeI	YGGCCR	2 cut(s)	45, 229
Eco130I	CCWWGG	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	1 cut(s)	454
FaiI	YATR	6 cut(s)	98, 244, 246, 372, 452, 612
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	1 cut(s)	450
FauNDI	CATATG	1 cut(s)	244
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	2 cut(s)	104, 201
FokI	GGATG	2 cut(s)	68, 350
Fsp4HI	GCNGC	2 cut(s)	104, 201
FspBI	CTAG	1 cut(s)	419
GluI	GCNGC	2 cut(s)	104, 201
HaeIII	GGCC	5 cut(s)	5, 47, 65, 231, 600
HapII	CCGG	1 cut(s)	492
Hin1II	CATG	1 cut(s)	454
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HindIII	AAGCTT	1 cut(s)	380
HpaII	CCGG	1 cut(s)	492
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	4 cut(s)	158, 277, 352, 424
Hpy188I	TCNGA	1 cut(s)	91
Hpy188III	TCNNGA	2 cut(s)	77, 176
Hpy8I	GTNNAC	4 cut(s)	158, 277, 352, 424
Hpy99I	CGWCG	1 cut(s)	353
HpyCH4III	ACNGT	2 cut(s)	31, 499
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	2 cut(s)	20, 485
HpyF10VI	GCNNNNNNNGC	3 cut(s)	451, 470, 602
HpyF3I	CTNAG	3 cut(s)	210, 301, 528
HpySE526I	ACGT	1 cut(s)	570
Hsp92II	CATG	1 cut(s)	454
Kzo9I	GATC	2 cut(s)	73, 588
LmnI	GCTCC	1 cut(s)	610
Lsp1109I	GCAGC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	419
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	75, 590
MboI	GATC	2 cut(s)	73, 588
MboII	GAAGA	1 cut(s)	598
MflI	RGATCY	1 cut(s)	73
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	2 cut(s)	149, 257
MluNI	TGGCCA	1 cut(s)	47
MmeI	TCCRAC	2 cut(s)	114, 370
MnlI	CCTC	4 cut(s)	294, 306, 557, 618
Mox20I	TGGCCA	1 cut(s)	47
MroXI	GAANNNNTTC	1 cut(s)	499
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	3 cut(s)	123, 186, 225
MslI	CAYNNNNRTG	1 cut(s)	401
Msp20I	TGGCCA	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	305
MspI	CCGG	1 cut(s)	492
MspR9I	CCNGG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	3 cut(s)	451, 470, 602
NdeI	CATATG	1 cut(s)	244
NdeII	GATC	2 cut(s)	73, 588
NlaIII	CATG	1 cut(s)	454
NlaIV	GGNNCC	2 cut(s)	331, 507
NspI	RCATGY	1 cut(s)	454
PdmI	GAANNNNTTC	1 cut(s)	499
PflMI	CCANNNNNTGG	1 cut(s)	269
PkrI	GCNGC	2 cut(s)	105, 202
Psp6I	CCWGG	1 cut(s)	42
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	2 cut(s)	331, 507
PspPI	GGNCC	1 cut(s)	63
PstNI	CAGNNNCTG	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	3 cut(s)	24, 36, 434
RsaNI	GTAC	3 cut(s)	23, 35, 433
RseI	CAYNNNNRTG	1 cut(s)	401
SalI	GTCGAC	1 cut(s)	350
SaqAI	TTAA	3 cut(s)	123, 186, 225
SatI	GCNGC	2 cut(s)	104, 201
Sau3AI	GATC	2 cut(s)	73, 588
Sau96I	GGNCC	1 cut(s)	63
ScaI	AGTACT	2 cut(s)	24, 36
ScrFI	CCNGG	1 cut(s)	44
SetI	ASST	7 cut(s)	185, 192, 202, 286, 307, 384, 573
SfcI	CTRYAG	1 cut(s)	370
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
SpeI	ACTAGT	1 cut(s)	418
Sse9I	AATT	2 cut(s)	149, 257
SsiI	CCGC	2 cut(s)	104, 248
SspMI	CTAG	1 cut(s)	419
StyD4I	CCNGG	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	2 cut(s)	31, 499
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	1 cut(s)	351
TasI	AATT	2 cut(s)	149, 257
TatI	WGTACW	3 cut(s)	22, 34, 432
TauI	GCSGC	1 cut(s)	106
Tru1I	TTAA	3 cut(s)	123, 186, 225
Tru9I	TTAA	3 cut(s)	123, 186, 225
TscAI	CASTG	1 cut(s)	522
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	555
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	1 cut(s)	522
Van91I	CCANNNNNTGG	1 cut(s)	269
XapI	RAATTY	1 cut(s)	149
XceI	RCATGY	1 cut(s)	454
XmiI	GTMKAC	1 cut(s)	351
XmnI	GAANNNNTTC	1 cut(s)	499
XspI	CTAG	1 cut(s)	419
ZrmI	AGTACT	2 cut(s)	24, 36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.