Rh4AG391500
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
69784511 .. 69785597
1087 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG391500.1

Sequence Viewer

Length: 325 bp
ATGCGGGCGAAAGTGGCAGATTTTGGATTGGTTTGTCTTGCTCCAGCAGGGAAAGCCTCTATTGAGACAAGGCTAGCAGGAACTTTTGGCTATTTGGCTCCAGAATATGCAGCAACTGGACGGATGACGCTGAAGGTAGATGTTTTCAGCTTCGGAGTAATATTAATGGAGTTGATCACGGGAAGAAAAGCACTTGACGAAAGCCAGCCTGAGGAGAGTTGTCACCTAGTGACATGGTTTCATAGAAAGATCATTAAAACAGATGCACTCCCAGAGATGGTTGATCCAAGAATTAATGTCAATGAGGAAACAATTTCTAGTATTA

Protein Analysis

108

Amino Acids

11.9

Weight (kDa)

5.64

Isoelectric Point (pI)

37.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 3 - 87 1.6e-12 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 3 - 81 1.3e-10 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AclWI GGATC 1 cut(s) 278
AcuI CTGAAG 1 cut(s) 152
AdeI CACNNNGTG 1 cut(s) 229
AfiI CCNNNNNNNGG 2 cut(s) 211, 277
AluBI AGCT 1 cut(s) 150
AluI AGCT 1 cut(s) 150
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 1 cut(s) 278
AlwNI CAGNNNCTG 1 cut(s) 116
ApeKI GCWGC 1 cut(s) 110
AseI ATTAAT 2 cut(s) 164, 294
AsuHPI GGTGA 1 cut(s) 215
AsuNHI GCTAGC 1 cut(s) 73
AxyI CCTNAGG 1 cut(s) 210
BbvI GCAGC 1 cut(s) 122
BccI CCATC 1 cut(s) 271
BclI TGATCA 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 3 cut(s) 74, 227, 318
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 99
BmsI GCATC 1 cut(s) 253
BmtI GCTAGC 1 cut(s) 77
BpmI CTGGAG 2 cut(s) 27, 84
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 277
Bse1I ACTGG 1 cut(s) 121
Bse21I CCTNAGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 211, 277
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 122
BslI CCNNNNNNNGG 2 cut(s) 211, 277
BsmAI GTCTC 1 cut(s) 59
Bsp143I GATC 3 cut(s) 174, 249, 283
BspACI CCGC 1 cut(s) 4
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 99
BspOI GCTAGC 1 cut(s) 77
BspPI GGATC 1 cut(s) 278
BsrI ACTGG 1 cut(s) 121
BssMI GATC 3 cut(s) 174, 249, 283
BstC8I GCNNGC 3 cut(s) 6, 75, 206
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 3 cut(s) 177, 252, 286
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 3 cut(s) 174, 249, 283
BstMWI GCNNNNNNNGC 2 cut(s) 14, 53
BstV1I GCAGC 1 cut(s) 122
Bsu36I CCTNAGG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 129
Cac8I GCNNGC 3 cut(s) 6, 75, 206
CaiI CAGNNNCTG 1 cut(s) 116
CseI GACGC 1 cut(s) 136
CviAII CATG 1 cut(s) 234
CviJI RGCY 7 cut(s) 56, 73, 90, 98, 150, 204, 208
CviKI_1 RGCY 7 cut(s) 56, 73, 90, 98, 150, 204, 208
DdeI CTNAG 1 cut(s) 210
DpnI GATC 3 cut(s) 176, 251, 285
DpnII GATC 3 cut(s) 174, 249, 283
DraIII CACNNNGTG 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 152
Eco81I CCTNAGG 1 cut(s) 210
FaeI CATG 1 cut(s) 237
FaiI YATR 3 cut(s) 108, 235, 243
FatI CATG 1 cut(s) 233
FbaI TGATCA 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 3 cut(s) 74, 227, 318
GluI GCNGC 1 cut(s) 111
GsuI CTGGAG 2 cut(s) 27, 84
HgaI GACGC 1 cut(s) 136
Hin1II CATG 1 cut(s) 237
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 127
HpyCH4V TGCA 2 cut(s) 110, 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 53
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 1 cut(s) 237
Ksp22I TGATCA 1 cut(s) 174
Kzo9I GATC 3 cut(s) 174, 249, 283
LmnI GCTCC 2 cut(s) 46, 103
LpnPI CCDG 8 cut(s) 33, 57, 63, 102, 114, 218, 222, 285
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 1 cut(s) 253
MaeI CTAG 3 cut(s) 74, 227, 318
MaeIII GTNAC 2 cut(s) 221, 229
MalI GATC 3 cut(s) 176, 251, 285
MboI GATC 3 cut(s) 174, 249, 283
MboII GAAGA 1 cut(s) 195
MluCI AATT 2 cut(s) 291, 312
MnlI CCTC 3 cut(s) 67, 205, 298
MseI TTAA 3 cut(s) 164, 255, 294
MwoI GCNNNNNNNGC 2 cut(s) 14, 53
NdeII GATC 3 cut(s) 174, 249, 283
NheI GCTAGC 1 cut(s) 73
NlaIII CATG 1 cut(s) 237
NlaIV GGNNCC 1 cut(s) 99
NmuCI GTSAC 2 cut(s) 221, 229
PkrI GCNGC 1 cut(s) 112
PshBI ATTAAT 2 cut(s) 164, 294
PspN4I GGNNCC 1 cut(s) 99
PstNI CAGNNNCTG 1 cut(s) 116
SaqAI TTAA 3 cut(s) 164, 255, 294
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 3 cut(s) 174, 249, 283
SetI ASST 3 cut(s) 138, 152, 228
SfaNI GCATC 1 cut(s) 253
Sse9I AATT 2 cut(s) 291, 312
SsiI CCGC 1 cut(s) 4
SspI AATATT 1 cut(s) 162
SspMI CTAG 3 cut(s) 74, 227, 318
TasI AATT 2 cut(s) 291, 312
Tru1I TTAA 3 cut(s) 164, 255, 294
Tru9I TTAA 3 cut(s) 164, 255, 294
TseFI GTSAC 2 cut(s) 221, 229
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 2 cut(s) 221, 229
TspDTI ATGAA 1 cut(s) 230
TspGWI ACGGA 1 cut(s) 136
VspI ATTAAT 2 cut(s) 164, 294
XspI CTAG 3 cut(s) 74, 227, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.