Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005535

Physical Location & Seq

Genomic Coordinates Forward (+)

66438779 .. 66440530

Gene Structure 1752 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG420300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCCGCAGGGGACTCTTAGTAGACATTTGTTCAACTGGAAAGAAGAAGGGCTGGAGCCACTTGAATGGACTAGAAGACTAACCATTGCCTTGGATGTTGCGAGGGGTGTTCAATACCTACATGGTTTGGCCAACGAAATCTTCAATCATAGAGACCTTAAACCTTCAAATATTTTACTTGGAGATGATATGCGGGCGAAAGTGGCAGACTTTGGATTGGTTCGTCTTGCTCCAGCAGGGAAAGCCTCTATTGAGACAAGACTAGCAGGAACTTTTGGCTATTTGGCTCCAGAATATGCAGCAACTGGACGGATGACGCTCAAGGTAGATGTTTACAGCTTCGGAGTAATATTAATGGAGTTGATCACGGGAAGAAAAGCAATTGACGAAAGCCAGCCTGAGGAGAGTTGTCACCTAGTGACATGGTTTCGTAGAAAGCTCATTAAAACAGATGCACTCCCAGAGATGGTTGATCCAAGAATTAATGTCAATGAGGAAACAATTTCTAGTATTAGTACAGTTGCTGAGCTTGCTGGTCATTGCAGAGCAAGGGAGCTGTACCAAAGACCTGACATAGGTCATGCAGTCAATGTACTTTCATCGCTTGTTGAGCAGTGGAAGCCATCTAAACAAGAAGATTTTGATGAGATGGATGCAATCAACTTCGATGTGCCGTTAAATGAAGCAGTAAAGATGTGGCAGGCTGCTGAGGGAAAAAGCAACACTGATGAATCCTCATCTTCATCAATCTTTCCTAGCGGGGATACCACCCAGACCAGCATTCCTAATCGGCCTTCTGGATTTGCAGAGTCGTTTACATCATCAGATGGGCGGTCAAGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

281

Amino Acids

31.32

Weight (kDa)

5.35

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 142	7.9e-23	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	27 - 194	8.7e-25	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15321
malus_domestica	MD00G1049600.v1.1 MD09G1266500.v1.1 MD16G1015100.v1.1
pyrus_communis	pycom16g01410
rosa_chinensis	RchiOBHm_Chr4g0442251 RchiOBHm_Chr4g0442481
rosa_laevigata	RLG00000006008
rosa_multiflora	Rmu_co8215092.1_g000001 Rmu_co8349657.1_g000001 Rmu_sc0000124.1_g000059 Rmu_sc0004133.1_g000015 Rmu_sc0005621.1_g000018 Rmu_sc0010284.1_g000001 Rmu_ssc0000204.1_g000052
rosa_roxburghii	Rroxscaffold_5G00357610 Rroxscaffold_5G00383310
rosa_rugosa	Rorug01G0093400 Rorug01G0093500 Rorug04G0340000 Rorug04G0341100
rosa_samantha	Rh4AG391500 Rh4AG391600 Rh4BG405200 Rh4CG420300 Rh4CG421800 Rh4DG177000 Rh4DG398400 Rh4DG400100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	22
AciI	CCGC	4 cut(s)	5, 193, 759, 832
AclWI	GGATC	1 cut(s)	467
AcoI	YGGCCR	1 cut(s)	129
AdeI	CACNNNGTG	1 cut(s)	418
AfaI	GTAC	3 cut(s)	517, 560, 594
AfiI	CCNNNNNNNGG	3 cut(s)	400, 466, 575
AgsI	TTSAA	5 cut(s)	34, 65, 113, 145, 168
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	4 cut(s)	339, 439, 529, 556
AluI	AGCT	4 cut(s)	339, 439, 529, 556
Alw26I	GTCTC	2 cut(s)	147, 248
AlwI	GGATC	1 cut(s)	467
AlwNI	CAGNNNCTG	2 cut(s)	305, 524
AoxI	GGCC	2 cut(s)	129, 791
ApeKI	GCWGC	2 cut(s)	299, 704
AseI	ATTAAT	2 cut(s)	353, 483
AsuHPI	GGTGA	1 cut(s)	404
AxyI	CCTNAGG	1 cut(s)	399
BalI	TGGCCA	1 cut(s)	131
BbsI	GAAGAC	1 cut(s)	82
BbvCI	CCTCAGC	1 cut(s)	708
BbvI	GCAGC	2 cut(s)	311, 691
BccI	CCATC	4 cut(s)	460, 631, 643, 821
BceAI	ACGGC	1 cut(s)	658
BciVI	GTATCC	1 cut(s)	757
BclI	TGATCA	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	147, 248
BfaI	CTAG	5 cut(s)	72, 263, 416, 507, 756
BfuI	GTATCC	1 cut(s)	757
BisI	GCNGC	3 cut(s)	5, 300, 705
BlpI	GCTNAGC	1 cut(s)	525
BlsI	GCNGC	3 cut(s)	6, 301, 706
BmiI	GGNNCC	2 cut(s)	57, 288
BmsI	GCATC	2 cut(s)	442, 643
BoxI	GACNNNNGTC	1 cut(s)	576
BpiI	GAAGAC	1 cut(s)	82
BpmI	CTGGAG	3 cut(s)	74, 216, 273
Bpu10I	CCTNAGC	1 cut(s)	708
Bpu1102I	GCTNAGC	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	305
BsaI	GGTCTC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	3 cut(s)	400, 466, 575
Bse1I	ACTGG	2 cut(s)	41, 310
Bse21I	CCTNAGG	1 cut(s)	399
Bse3DI	GCAATG	2 cut(s)	84, 538
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	3 cut(s)	100, 318, 658
BseLI	CCNNNNNNNGG	3 cut(s)	400, 466, 575
BseMI	GCAATG	2 cut(s)	84, 538
BseMII	CTCAG	3 cut(s)	390, 516, 699
BseNI	ACTGG	2 cut(s)	41, 310
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	2 cut(s)	311, 691
BshFI	GGCC	2 cut(s)	131, 793
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	3 cut(s)	400, 466, 575
BsmAI	GTCTC	2 cut(s)	147, 248
BsmFI	GGGAC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	780
BsnI	GGCC	2 cut(s)	131, 793
Bso31I	GGTCTC	1 cut(s)	147
Bsp143I	GATC	2 cut(s)	363, 472
Bsp1720I	GCTNAGC	1 cut(s)	525
BspACI	CCGC	4 cut(s)	5, 193, 759, 832
BspANI	GGCC	2 cut(s)	131, 793
BspCNI	CTCAG	3 cut(s)	391, 517, 700
BspLI	GGNNCC	2 cut(s)	57, 288
BspPI	GGATC	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	147
BsrDI	GCAATG	2 cut(s)	84, 538
BsrI	ACTGG	2 cut(s)	41, 310
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	2 cut(s)	363, 472
BssT1I	CCWWGG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	520
BstC8I	GCNNGC	4 cut(s)	195, 395, 531, 702
BstDEI	CTNAG	4 cut(s)	17, 399, 525, 708
BstENI	CCTNNNNNAGG	1 cut(s)	573
BstF5I	GGATG	3 cut(s)	100, 318, 658
BstKTI	GATC	2 cut(s)	366, 475
BstMAI	GTCTC	2 cut(s)	147, 248
BstMBI	GATC	2 cut(s)	363, 472
BstMWI	GCNNNNNNNGC	5 cut(s)	203, 242, 530, 610, 619
BstPAI	GACNNNNGTC	1 cut(s)	576
BstV1I	GCAGC	2 cut(s)	311, 691
BstV2I	GAAGAC	1 cut(s)	82
BstXI	CCANNNNNNTGG	2 cut(s)	66, 91
Bsu36I	CCTNAGG	1 cut(s)	399
BsuI	GTATCC	1 cut(s)	757
BsuRI	GGCC	2 cut(s)	131, 793
BtgZI	GCGATG	1 cut(s)	585
BtsCI	GGATG	3 cut(s)	100, 318, 658
BtsI	GCAGTG	1 cut(s)	620
BtsIMutI	CAGTG	2 cut(s)	620, 723
Cac8I	GCNNGC	4 cut(s)	195, 395, 531, 702
CaiI	CAGNNNCTG	2 cut(s)	305, 524
CseI	GACGC	1 cut(s)	325
Csp6I	GTAC	3 cut(s)	516, 559, 593
CviAII	CATG	3 cut(s)	122, 423, 581
CviQI	GTAC	3 cut(s)	516, 559, 593
DdeI	CTNAG	4 cut(s)	17, 399, 525, 708
DpnI	GATC	2 cut(s)	365, 474
DpnII	GATC	2 cut(s)	363, 472
DraIII	CACNNNGTG	1 cut(s)	418
EaeI	YGGCCR	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	90
Eco31I	GGTCTC	1 cut(s)	147
Eco81I	CCTNAGG	1 cut(s)	399
EcoNI	CCTNNNNNAGG	1 cut(s)	573
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaeI	CATG	3 cut(s)	125, 426, 584
FaiI	YATR	7 cut(s)	123, 150, 191, 297, 424, 575, 582
FaqI	GGGAC	1 cut(s)	25
FatI	CATG	3 cut(s)	121, 422, 580
FauI	CCCGC	2 cut(s)	186, 752
FbaI	TGATCA	1 cut(s)	363
FblI	GTMKAC	1 cut(s)	22
Fnu4HI	GCNGC	3 cut(s)	5, 300, 705
FokI	GGATG	3 cut(s)	107, 325, 665
Fsp4HI	GCNGC	3 cut(s)	5, 300, 705
FspBI	CTAG	5 cut(s)	72, 263, 416, 507, 756
GluI	GCNGC	3 cut(s)	5, 300, 705
GsuI	CTGGAG	3 cut(s)	74, 216, 273
HaeIII	GGCC	2 cut(s)	131, 793
HgaI	GACGC	1 cut(s)	325
Hin1II	CATG	3 cut(s)	125, 426, 584
HinfI	GANTC	3 cut(s)	13, 731, 809
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	3 cut(s)	23, 334, 816
Hpy188I	TCNGA	2 cut(s)	344, 826
Hpy188III	TCNNGA	3 cut(s)	290, 798, 837
Hpy8I	GTNNAC	3 cut(s)	23, 334, 816
HpyAV	CCTTC	3 cut(s)	41, 174, 804
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4V	TGCA	6 cut(s)	299, 455, 543, 584, 656, 806
HpyF10VI	GCNNNNNNNGC	5 cut(s)	203, 242, 530, 610, 619
HpyF3I	CTNAG	4 cut(s)	17, 399, 525, 708
Hsp92II	CATG	3 cut(s)	125, 426, 584
Ksp22I	TGATCA	1 cut(s)	363
Kzo9I	GATC	2 cut(s)	363, 472
LmnI	GCTCC	4 cut(s)	55, 235, 292, 553
Lsp1109I	GCAGC	2 cut(s)	311, 691
LweI	GCATC	2 cut(s)	442, 643
MaeI	CTAG	5 cut(s)	72, 263, 416, 507, 756
MaeIII	GTNAC	2 cut(s)	410, 418
MalI	GATC	2 cut(s)	365, 474
MboI	GATC	2 cut(s)	363, 472
MboII	GAAGA	6 cut(s)	56, 87, 133, 384, 647, 732
MfeI	CAATTG	1 cut(s)	381
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	3 cut(s)	381, 480, 501
MluNI	TGGCCA	1 cut(s)	131
MlyI	GAGTC	2 cut(s)	7, 818
MnlI	CCTC	6 cut(s)	96, 256, 394, 487, 703, 745
Mox20I	TGGCCA	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	5 cut(s)	159, 353, 444, 483, 677
MslI	CAYNNNNRTG	1 cut(s)	64
Msp20I	TGGCCA	1 cut(s)	131
MunI	CAATTG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	780
MwoI	GCNNNNNNNGC	5 cut(s)	203, 242, 530, 610, 619
NdeII	GATC	2 cut(s)	363, 472
NlaIII	CATG	3 cut(s)	125, 426, 584
NlaIV	GGNNCC	2 cut(s)	57, 288
NmuCI	GTSAC	2 cut(s)	410, 418
PctI	GAATGC	1 cut(s)	780
PfeI	GAWTC	1 cut(s)	731
PkrI	GCNGC	3 cut(s)	6, 301, 706
PleI	GAGTC	2 cut(s)	7, 817
PpsI	GAGTC	2 cut(s)	7, 817
PshAI	GACNNNNGTC	1 cut(s)	576
PshBI	ATTAAT	2 cut(s)	353, 483
PspN4I	GGNNCC	2 cut(s)	57, 288
PstNI	CAGNNNCTG	2 cut(s)	305, 524
RsaI	GTAC	3 cut(s)	517, 560, 594
RsaNI	GTAC	3 cut(s)	516, 559, 593
RseI	CAYNNNNRTG	1 cut(s)	64
SaqAI	TTAA	5 cut(s)	159, 353, 444, 483, 677
SatI	GCNGC	3 cut(s)	5, 300, 705
Sau3AI	GATC	2 cut(s)	363, 472
SchI	GAGTC	2 cut(s)	7, 818
SfaNI	GCATC	2 cut(s)	442, 643
SmiMI	CAYNNNNRTG	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	3 cut(s)	381, 480, 501
SsiI	CCGC	4 cut(s)	5, 193, 759, 832
SspI	AATATT	2 cut(s)	172, 351
SspMI	CTAG	5 cut(s)	72, 263, 416, 507, 756
StyI	CCWWGG	1 cut(s)	90
TaaI	ACNGT	1 cut(s)	520
TaqI	TCGA	1 cut(s)	666
TasI	AATT	3 cut(s)	381, 480, 501
TatI	WGTACW	2 cut(s)	515, 592
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	731
Tru1I	TTAA	5 cut(s)	159, 353, 444, 483, 677
Tru9I	TTAA	5 cut(s)	159, 353, 444, 483, 677
TscAI	CASTG	2 cut(s)	620, 730
TseFI	GTSAC	2 cut(s)	410, 418
TseI	GCWGC	2 cut(s)	299, 704
Tsp45I	GTSAC	2 cut(s)	410, 418
TspDTI	ATGAA	4 cut(s)	588, 696, 732, 744
TspGWI	ACGGA	1 cut(s)	325
TspRI	CASTG	2 cut(s)	620, 730
VspI	ATTAAT	2 cut(s)	353, 483
XagI	CCTNNNNNAGG	1 cut(s)	573
XmiI	GTMKAC	1 cut(s)	22
XspI	CTAG	5 cut(s)	72, 263, 416, 507, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.