Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005535

Physical Location & Seq

Genomic Coordinates Forward (+)

1175979 .. 1176309

Gene Structure 331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1015100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGAGCTGATCACGGGTAGAAGAGCAATTCTTAAAAGCGAACCAGAGGAGAGCTTGCACCTTGTTACATGGTTCCGCAGAATGCTCATTAACAAGGATGCACTCCGGAAGGCCATTGATCCAACAATTGATCTCAATGAGGAAACTCTTTCCAGTATTAACACTGTCGCTGAGCTTGCTGGGCATTGCAGCACAACGGAGCCCTACCAGAGGCCTGACATGGGTCATGCAGTCAATGTTCTTTCGTCGCTTGTTGAGCGTTGGAAACCATCTGAAGCCGAAGATTCTGACGGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

100

Amino Acids

11.16

Weight (kDa)

4.96

Isoelectric Point (pI)

58.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15321
malus_domestica	MD00G1049600.v1.1 MD09G1266500.v1.1 MD16G1015100.v1.1
pyrus_communis	pycom16g01410
rosa_chinensis	RchiOBHm_Chr4g0442251 RchiOBHm_Chr4g0442481
rosa_laevigata	RLG00000006008
rosa_multiflora	Rmu_co8215092.1_g000001 Rmu_co8349657.1_g000001 Rmu_sc0000124.1_g000059 Rmu_sc0004133.1_g000015 Rmu_sc0005621.1_g000018 Rmu_sc0010284.1_g000001 Rmu_ssc0000204.1_g000052
rosa_roxburghii	Rroxscaffold_5G00357610 Rroxscaffold_5G00383310
rosa_rugosa	Rorug01G0093400 Rorug01G0093500 Rorug04G0340000 Rorug04G0341100
rosa_samantha	Rh4AG391500 Rh4AG391600 Rh4BG405200 Rh4CG420300 Rh4CG421800 Rh4DG177000 Rh4DG398400 Rh4DG400100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	105
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	1 cut(s)	113
AcuI	CTGAAG	1 cut(s)	294
AfiI	CCNNNNNNNGG	2 cut(s)	210, 221
AluBI	AGCT	3 cut(s)	7, 54, 175
AluI	AGCT	3 cut(s)	7, 54, 175
AlwI	GGATC	1 cut(s)	113
Aor13HI	TCCGGA	1 cut(s)	105
AoxI	GGCC	2 cut(s)	111, 212
ApeKI	GCWGC	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	201
BccI	CCATC	1 cut(s)	277
BclI	TGATCA	1 cut(s)	9
BisI	GCNGC	1 cut(s)	190
BlpI	GCTNAGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	191
BmiI	GGNNCC	2 cut(s)	74, 201
BmsI	GCATC	1 cut(s)	88
BoxI	GACNNNNGTC	1 cut(s)	222
Bpu1102I	GCTNAGC	1 cut(s)	171
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	2 cut(s)	210, 221
Bse1I	ACTGG	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	184
BseAI	TCCGGA	1 cut(s)	105
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	2 cut(s)	210, 221
BseMI	GCAATG	1 cut(s)	184
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	201
BseYI	CCCAGC	1 cut(s)	179
BshFI	GGCC	2 cut(s)	113, 214
BsiSI	CCGG	1 cut(s)	106
BslI	CCNNNNNNNGG	2 cut(s)	210, 221
BsmI	GAATGC	1 cut(s)	87
BsnI	GGCC	2 cut(s)	113, 214
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp13I	TCCGGA	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	9, 118, 130
Bsp1720I	GCTNAGC	1 cut(s)	171
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	2 cut(s)	113, 214
BspCNI	CTCAG	1 cut(s)	163
BspEI	TCCGGA	1 cut(s)	105
BspLI	GGNNCC	2 cut(s)	74, 201
BspPI	GGATC	1 cut(s)	113
BspQI	GCTCTTC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	184
BsrI	ACTGG	1 cut(s)	153
BssMI	GATC	3 cut(s)	9, 118, 130
Bst4CI	ACNGT	2 cut(s)	166, 293
Bst6I	CTCTTC	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	56, 177
BstDEI	CTNAG	1 cut(s)	171
BstENI	CCTNNNNNAGG	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	103
BstKTI	GATC	3 cut(s)	12, 121, 133
BstMBI	GATC	3 cut(s)	9, 118, 130
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 181, 256
BstPAI	GACNNNNGTC	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	113, 214
BtsCI	GGATG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	2 cut(s)	56, 177
CviAII	CATG	3 cut(s)	69, 220, 227
CviJI	RGCY	7 cut(s)	7, 54, 113, 175, 202, 214, 278
CviKI_1	RGCY	7 cut(s)	7, 54, 113, 175, 202, 214, 278
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	3 cut(s)	11, 120, 132
DpnII	GATC	3 cut(s)	9, 118, 130
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco147I	AGGCCT	1 cut(s)	214
Eco24I	GRGCYC	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	294
EcoNI	CCTNNNNNAGG	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	204
FaeI	CATG	3 cut(s)	72, 223, 230
FaiI	YATR	4 cut(s)	70, 221, 228, 296
FatI	CATG	3 cut(s)	68, 219, 226
FbaI	TGATCA	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	190
FokI	GGATG	1 cut(s)	110
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	1 cut(s)	190
GluI	GCNGC	1 cut(s)	190
GsaI	CCCAGC	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	113, 214
HapII	CCGG	1 cut(s)	106
Hin1II	CATG	3 cut(s)	72, 223, 230
HinfI	GANTC	1 cut(s)	284
HpaII	CCGG	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	274, 289
Hpy188III	TCNNGA	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	2 cut(s)	166, 293
HpyCH4V	TGCA	4 cut(s)	58, 101, 189, 230
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 181, 256
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	3 cut(s)	72, 223, 230
Kpn2I	TCCGGA	1 cut(s)	105
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	3 cut(s)	9, 118, 130
LguI	GCTCTTC	1 cut(s)	16
LmnI	GCTCC	2 cut(s)	4, 199
LpnPI	CCDG	6 cut(s)	57, 119, 165, 166, 221, 228
Lsp1109I	GCAGC	1 cut(s)	201
LweI	GCATC	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	3 cut(s)	11, 120, 132
MboI	GATC	3 cut(s)	9, 118, 130
MboII	GAAGA	2 cut(s)	33, 293
MfeI	CAATTG	1 cut(s)	126
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	2 cut(s)	27, 126
MmeI	TCCRAC	2 cut(s)	146, 242
MnlI	CCTC	3 cut(s)	40, 133, 204
MroI	TCCGGA	1 cut(s)	105
MseI	TTAA	3 cut(s)	33, 90, 159
MspI	CCGG	1 cut(s)	106
MunI	CAATTG	1 cut(s)	126
Mva1269I	GAATGC	1 cut(s)	87
MwoI	GCNNNNNNNGC	3 cut(s)	176, 181, 256
NdeII	GATC	3 cut(s)	9, 118, 130
NlaIII	CATG	3 cut(s)	72, 223, 230
NlaIV	GGNNCC	2 cut(s)	74, 201
PceI	AGGCCT	1 cut(s)	214
PciSI	GCTCTTC	1 cut(s)	16
PctI	GAATGC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	191
PshAI	GACNNNNGTC	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	74, 201
SapI	GCTCTTC	1 cut(s)	16
SaqAI	TTAA	3 cut(s)	33, 90, 159
SatI	GCNGC	1 cut(s)	190
Sau3AI	GATC	3 cut(s)	9, 118, 130
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	4 cut(s)	9, 56, 63, 177
SfaNI	GCATC	1 cut(s)	88
Sse9I	AATT	2 cut(s)	27, 126
SseBI	AGGCCT	1 cut(s)	214
SsiI	CCGC	1 cut(s)	76
StuI	AGGCCT	1 cut(s)	214
TaaI	ACNGT	2 cut(s)	166, 293
TasI	AATT	2 cut(s)	27, 126
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	3 cut(s)	33, 90, 159
Tru9I	TTAA	3 cut(s)	33, 90, 159
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	1 cut(s)	189
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	1 cut(s)	169
XagI	CCTNNNNNAGG	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.