Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0005535

Physical Location & Seq

Genomic Coordinates Forward (+)

61596183 .. 61596587

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG400100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGTATCAGCAACTGGACGGATGACGCTCAAGGTAGATGTGTACAGCTTCGGAGTAATATTAGTGGAGTTGATCACGGGAAGAAAAGCAATTGACGATAGCCAGACTGAGGAGAGTTGTCACCTAGTGACATGGTTTCGTAGAAAGCTCATGATTAAAACAGATGCACTCCCAGAGATGGTTGATCCAAGAATTAATGTCAATGAGGAAACAATTTCTAGTATTACTACAGTTGCTGAGCTTGCTGGTCATCGCAGCGCAAGGGAGCCGTACCAAAGGCCTGATATAGGTCATGCAGTCAATGTACTTTCATCGCTTGTTGAGCAGTGGAAGCCATCTAAACAAGAAGATTTTGATGAGATGGATGCAATCAACTTCGATGTGCCGTTAAATGAAGCAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

134

Amino Acids

15.12

Weight (kDa)

4.81

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15321
malus_domestica	MD00G1049600.v1.1 MD09G1266500.v1.1 MD16G1015100.v1.1
pyrus_communis	pycom16g01410
rosa_chinensis	RchiOBHm_Chr4g0442251 RchiOBHm_Chr4g0442481
rosa_laevigata	RLG00000006008
rosa_multiflora	Rmu_co8215092.1_g000001 Rmu_co8349657.1_g000001 Rmu_sc0000124.1_g000059 Rmu_sc0004133.1_g000015 Rmu_sc0005621.1_g000018 Rmu_sc0010284.1_g000001 Rmu_ssc0000204.1_g000052
rosa_roxburghii	Rroxscaffold_5G00357610 Rroxscaffold_5G00383310
rosa_rugosa	Rorug01G0093400 Rorug01G0093500 Rorug04G0340000 Rorug04G0341100
rosa_samantha	Rh4AG391500 Rh4AG391600 Rh4BG405200 Rh4CG420300 Rh4CG421800 Rh4DG177000 Rh4DG398400 Rh4DG400100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	179
AdeI	CACNNNGTG	1 cut(s)	127
AfaI	GTAC	3 cut(s)	44, 272, 306
AfiI	CCNNNNNNNGG	3 cut(s)	109, 178, 287
AluBI	AGCT	3 cut(s)	48, 148, 241
AluI	AGCT	3 cut(s)	48, 148, 241
AlwI	GGATC	1 cut(s)	179
AlwNI	CAGNNNCTG	2 cut(s)	14, 236
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	1 cut(s)	255
AseI	ATTAAT	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	267
BccI	CCATC	3 cut(s)	172, 343, 355
BceAI	ACGGC	2 cut(s)	253, 370
BclI	TGATCA	1 cut(s)	72
BfaI	CTAG	2 cut(s)	125, 219
BfmI	CTRYAG	1 cut(s)	228
BisI	GCNGC	1 cut(s)	256
BlpI	GCTNAGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	267
BmsI	GCATC	2 cut(s)	154, 355
Bpu1102I	GCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	3 cut(s)	109, 178, 287
Bse1I	ACTGG	1 cut(s)	19
BseGI	GGATG	2 cut(s)	27, 370
BseLI	CCNNNNNNNGG	3 cut(s)	109, 178, 287
BseMII	CTCAG	2 cut(s)	99, 228
BseNI	ACTGG	1 cut(s)	19
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	1 cut(s)	267
BshFI	GGCC	1 cut(s)	280
BslI	CCNNNNNNNGG	3 cut(s)	109, 178, 287
BsnI	GGCC	1 cut(s)	280
Bsp1407I	TGTACA	1 cut(s)	42
Bsp143I	GATC	2 cut(s)	72, 184
Bsp1720I	GCTNAGC	1 cut(s)	237
BspANI	GGCC	1 cut(s)	280
BspCNI	CTCAG	2 cut(s)	100, 229
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	267
BspPI	GGATC	1 cut(s)	179
BsrGI	TGTACA	1 cut(s)	42
BsrI	ACTGG	1 cut(s)	19
BssMI	GATC	2 cut(s)	72, 184
Bst4CI	ACNGT	1 cut(s)	232
BstAUI	TGTACA	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	2 cut(s)	108, 237
BstENI	CCTNNNNNAGG	1 cut(s)	285
BstF5I	GGATG	2 cut(s)	27, 370
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	2 cut(s)	75, 187
BstMBI	GATC	2 cut(s)	72, 184
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 322, 331
BstSFI	CTRYAG	1 cut(s)	228
BstV1I	GCAGC	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	280
BtgZI	GCGATG	2 cut(s)	236, 297
BtsCI	GGATG	2 cut(s)	27, 370
BtsI	GCAGTG	1 cut(s)	332
BtsIMutI	CAGTG	1 cut(s)	332
Cac8I	GCNNGC	1 cut(s)	243
CaiI	CAGNNNCTG	2 cut(s)	14, 236
CciI	TCATGA	1 cut(s)	150
CfoI	GCGC	1 cut(s)	260
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	3 cut(s)	43, 271, 305
CviAII	CATG	3 cut(s)	132, 151, 293
CviJI	RGCY	7 cut(s)	48, 102, 148, 241, 268, 280, 334
CviKI_1	RGCY	7 cut(s)	48, 102, 148, 241, 268, 280, 334
CviQI	GTAC	3 cut(s)	43, 271, 305
DdeI	CTNAG	2 cut(s)	108, 237
DpnI	GATC	2 cut(s)	74, 186
DpnII	GATC	2 cut(s)	72, 184
DraIII	CACNNNGTG	1 cut(s)	127
Eco147I	AGGCCT	1 cut(s)	280
EcoNI	CCTNNNNNAGG	1 cut(s)	285
FaeI	CATG	3 cut(s)	135, 154, 296
FaiI	YATR	5 cut(s)	133, 152, 287, 294, 403
FatI	CATG	3 cut(s)	131, 150, 292
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	2 cut(s)	34, 377
Fsp4HI	GCNGC	1 cut(s)	256
FspBI	CTAG	2 cut(s)	125, 219
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	1 cut(s)	256
HaeIII	GGCC	1 cut(s)	280
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	3 cut(s)	135, 154, 296
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	53
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	232
HpyCH4V	TGCA	3 cut(s)	167, 296, 368
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 322, 331
HpyF3I	CTNAG	2 cut(s)	108, 237
Hsp92II	CATG	3 cut(s)	135, 154, 296
HspAI	GCGC	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	72, 184
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	4 cut(s)	116, 186, 231, 294
Lsp1109I	GCAGC	1 cut(s)	267
LweI	GCATC	2 cut(s)	154, 355
MaeI	CTAG	2 cut(s)	125, 219
MaeIII	GTNAC	2 cut(s)	119, 127
MalI	GATC	2 cut(s)	74, 186
MboI	GATC	2 cut(s)	72, 184
MboII	GAAGA	2 cut(s)	93, 359
MfeI	CAATTG	1 cut(s)	90
MluCI	AATT	3 cut(s)	90, 192, 213
MnlI	CCTC	2 cut(s)	103, 199
MseI	TTAA	3 cut(s)	156, 195, 389
MunI	CAATTG	1 cut(s)	90
MwoI	GCNNNNNNNGC	3 cut(s)	242, 322, 331
NdeII	GATC	2 cut(s)	72, 184
NlaIII	CATG	3 cut(s)	135, 154, 296
NlaIV	GGNNCC	1 cut(s)	267
NmuCI	GTSAC	2 cut(s)	119, 127
PagI	TCATGA	1 cut(s)	150
PceI	AGGCCT	1 cut(s)	280
PkrI	GCNGC	1 cut(s)	257
PshBI	ATTAAT	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	267
PstNI	CAGNNNCTG	2 cut(s)	14, 236
RsaI	GTAC	3 cut(s)	44, 272, 306
RsaNI	GTAC	3 cut(s)	43, 271, 305
SaqAI	TTAA	3 cut(s)	156, 195, 389
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	2 cut(s)	72, 184
SetI	ASST	6 cut(s)	36, 50, 126, 150, 243, 292
SfaNI	GCATC	2 cut(s)	154, 355
SfcI	CTRYAG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	3 cut(s)	90, 192, 213
SseBI	AGGCCT	1 cut(s)	280
SspI	AATATT	1 cut(s)	60
SspMI	CTAG	2 cut(s)	125, 219
StuI	AGGCCT	1 cut(s)	280
TaaI	ACNGT	1 cut(s)	232
TaqI	TCGA	1 cut(s)	378
TasI	AATT	3 cut(s)	90, 192, 213
TatI	WGTACW	2 cut(s)	42, 304
Tru1I	TTAA	3 cut(s)	156, 195, 389
Tru9I	TTAA	3 cut(s)	156, 195, 389
TscAI	CASTG	1 cut(s)	332
TseFI	GTSAC	2 cut(s)	119, 127
TseI	GCWGC	1 cut(s)	255
Tsp45I	GTSAC	2 cut(s)	119, 127
TspDTI	ATGAA	1 cut(s)	300
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	1 cut(s)	332
VspI	ATTAAT	1 cut(s)	195
XagI	CCTNNNNNAGG	1 cut(s)	285
XspI	CTAG	2 cut(s)	125, 219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.