Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005535

Physical Location & Seq

Genomic Coordinates Forward (+)

55537452 .. 55539014

Gene Structure 1563 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG405200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGCGGGCGAAAGTGGCAGACTTTGGATTGGTTCGTCTTGCTCCAGCAGGGAAAGCCTCTATTGAGACAAGACTAGCAGGAACTTTTGGCTATTTGGCTCCAGAATATGCAGCAACTGGACGGATGACGCTCAAGGTAGATGTTTACAGCTTCGGAGTAATATTAATGGAGTTGATCACGGGAAGAAAAGCAATTGACGAAAGCCAGCCTGAGGAGAGTTGTCACCTAGTGACATGGTTTCGTAGAAAGCTCATTAAAACAGATGCACTCCCAGAGATGGTTGATCCAAGAATTAATGTCAATGAGGAAACAATTTCTAGTATTAGTACAGTTGCTGAGCTTGCTGGTCATTGCAGAGCAAGGGAGCTGTACCAAAGACCTGACATAGGTCATGCAGTCAATGTACTTTCATCGCTTGTTGAGCAGTGGAAGCCATCTAAACAAGAAGATTTTGATGAGATGGATGCAATCAACTTCGATGTGCCGTTAAATGAAGCAGTAAAGATGTGGCAGGCTGCTGAGGGAAAAAGCAACACTGATGAATCCTCATCTTCATCAATCTTTCCTAGCGGGGATACCACCCAGACCAGCATTCCTAATCGGCCTTCTGGATTTGCAGAGTCGTTTACATCATCAGATGGGCGGTCAAGACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

218

Amino Acids

24.04

Weight (kDa)

5.2

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	3 - 131	2.5e-12	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	3 - 80	3e-11	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15321
malus_domestica	MD00G1049600.v1.1 MD09G1266500.v1.1 MD16G1015100.v1.1
pyrus_communis	pycom16g01410
rosa_chinensis	RchiOBHm_Chr4g0442251 RchiOBHm_Chr4g0442481
rosa_laevigata	RLG00000006008
rosa_multiflora	Rmu_co8215092.1_g000001 Rmu_co8349657.1_g000001 Rmu_sc0000124.1_g000059 Rmu_sc0004133.1_g000015 Rmu_sc0005621.1_g000018 Rmu_sc0010284.1_g000001 Rmu_ssc0000204.1_g000052
rosa_roxburghii	Rroxscaffold_5G00357610 Rroxscaffold_5G00383310
rosa_rugosa	Rorug01G0093400 Rorug01G0093500 Rorug04G0340000 Rorug04G0341100
rosa_samantha	Rh4AG391500 Rh4AG391600 Rh4BG405200 Rh4CG420300 Rh4CG421800 Rh4DG177000 Rh4DG398400 Rh4DG400100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	4, 570, 643
AclWI	GGATC	1 cut(s)	278
AdeI	CACNNNGTG	1 cut(s)	229
AfaI	GTAC	3 cut(s)	328, 371, 405
AfiI	CCNNNNNNNGG	3 cut(s)	211, 277, 386
AluBI	AGCT	4 cut(s)	150, 250, 340, 367
AluI	AGCT	4 cut(s)	150, 250, 340, 367
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	278
AlwNI	CAGNNNCTG	2 cut(s)	116, 335
AoxI	GGCC	1 cut(s)	602
ApeKI	GCWGC	2 cut(s)	110, 515
AseI	ATTAAT	2 cut(s)	164, 294
AsuHPI	GGTGA	1 cut(s)	215
AxyI	CCTNAGG	1 cut(s)	210
BbvCI	CCTCAGC	1 cut(s)	519
BbvI	GCAGC	2 cut(s)	122, 502
BccI	CCATC	4 cut(s)	271, 442, 454, 632
BceAI	ACGGC	1 cut(s)	469
BciVI	GTATCC	1 cut(s)	568
BclI	TGATCA	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	59
BfaI	CTAG	4 cut(s)	74, 227, 318, 567
BfuI	GTATCC	1 cut(s)	568
BisI	GCNGC	2 cut(s)	111, 516
BlpI	GCTNAGC	1 cut(s)	336
BlsI	GCNGC	2 cut(s)	112, 517
BmiI	GGNNCC	1 cut(s)	99
BmsI	GCATC	2 cut(s)	253, 454
BoxI	GACNNNNGTC	1 cut(s)	387
BpmI	CTGGAG	2 cut(s)	27, 84
Bpu10I	CCTNAGC	1 cut(s)	519
Bpu1102I	GCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	3 cut(s)	211, 277, 386
Bse1I	ACTGG	1 cut(s)	121
Bse21I	CCTNAGG	1 cut(s)	210
Bse3DI	GCAATG	1 cut(s)	349
BseGI	GGATG	2 cut(s)	129, 469
BseLI	CCNNNNNNNGG	3 cut(s)	211, 277, 386
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	3 cut(s)	201, 327, 510
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	122, 502
BshFI	GGCC	1 cut(s)	604
BslI	CCNNNNNNNGG	3 cut(s)	211, 277, 386
BsmAI	GTCTC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	591
BsnI	GGCC	1 cut(s)	604
Bsp143I	GATC	2 cut(s)	174, 283
Bsp1720I	GCTNAGC	1 cut(s)	336
BspACI	CCGC	3 cut(s)	4, 570, 643
BspANI	GGCC	1 cut(s)	604
BspCNI	CTCAG	3 cut(s)	202, 328, 511
BspLI	GGNNCC	1 cut(s)	99
BspPI	GGATC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	2 cut(s)	174, 283
Bst4CI	ACNGT	1 cut(s)	331
BstC8I	GCNNGC	4 cut(s)	6, 206, 342, 513
BstDEI	CTNAG	3 cut(s)	210, 336, 519
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstF5I	GGATG	2 cut(s)	129, 469
BstKTI	GATC	2 cut(s)	177, 286
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	2 cut(s)	174, 283
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 53, 341, 421, 430
BstPAI	GACNNNNGTC	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	122, 502
Bsu36I	CCTNAGG	1 cut(s)	210
BsuI	GTATCC	1 cut(s)	568
BsuRI	GGCC	1 cut(s)	604
BtgZI	GCGATG	1 cut(s)	396
BtsCI	GGATG	2 cut(s)	129, 469
BtsI	GCAGTG	1 cut(s)	431
BtsIMutI	CAGTG	2 cut(s)	431, 534
Cac8I	GCNNGC	4 cut(s)	6, 206, 342, 513
CaiI	CAGNNNCTG	2 cut(s)	116, 335
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	3 cut(s)	327, 370, 404
CviAII	CATG	2 cut(s)	234, 392
CviQI	GTAC	3 cut(s)	327, 370, 404
DdeI	CTNAG	3 cut(s)	210, 336, 519
DpnI	GATC	2 cut(s)	176, 285
DpnII	GATC	2 cut(s)	174, 283
DraIII	CACNNNGTG	1 cut(s)	229
Eco81I	CCTNAGG	1 cut(s)	210
EcoNI	CCTNNNNNAGG	1 cut(s)	384
FaeI	CATG	2 cut(s)	237, 395
FaiI	YATR	4 cut(s)	108, 235, 386, 393
FatI	CATG	2 cut(s)	233, 391
FauI	CCCGC	1 cut(s)	563
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	111, 516
FokI	GGATG	2 cut(s)	136, 476
Fsp4HI	GCNGC	2 cut(s)	111, 516
FspBI	CTAG	4 cut(s)	74, 227, 318, 567
GluI	GCNGC	2 cut(s)	111, 516
GsuI	CTGGAG	2 cut(s)	27, 84
HaeIII	GGCC	1 cut(s)	604
HgaI	GACGC	1 cut(s)	136
Hin1II	CATG	2 cut(s)	237, 395
HinfI	GANTC	2 cut(s)	542, 620
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	2 cut(s)	145, 627
Hpy188I	TCNGA	2 cut(s)	155, 637
Hpy188III	TCNNGA	3 cut(s)	101, 609, 648
Hpy8I	GTNNAC	2 cut(s)	145, 627
HpyAV	CCTTC	1 cut(s)	615
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4V	TGCA	6 cut(s)	110, 266, 354, 395, 467, 617
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 53, 341, 421, 430
HpyF3I	CTNAG	3 cut(s)	210, 336, 519
Hsp92II	CATG	2 cut(s)	237, 395
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	174, 283
LmnI	GCTCC	3 cut(s)	46, 103, 364
Lsp1109I	GCAGC	2 cut(s)	122, 502
LweI	GCATC	2 cut(s)	253, 454
MaeI	CTAG	4 cut(s)	74, 227, 318, 567
MaeIII	GTNAC	2 cut(s)	221, 229
MalI	GATC	2 cut(s)	176, 285
MboI	GATC	2 cut(s)	174, 283
MboII	GAAGA	3 cut(s)	195, 458, 543
MfeI	CAATTG	1 cut(s)	192
MluCI	AATT	3 cut(s)	192, 291, 312
MlyI	GAGTC	1 cut(s)	629
MnlI	CCTC	5 cut(s)	67, 205, 298, 514, 556
MseI	TTAA	4 cut(s)	164, 255, 294, 488
MunI	CAATTG	1 cut(s)	192
Mva1269I	GAATGC	1 cut(s)	591
MwoI	GCNNNNNNNGC	5 cut(s)	14, 53, 341, 421, 430
NdeII	GATC	2 cut(s)	174, 283
NlaIII	CATG	2 cut(s)	237, 395
NlaIV	GGNNCC	1 cut(s)	99
NmuCI	GTSAC	2 cut(s)	221, 229
PctI	GAATGC	1 cut(s)	591
PfeI	GAWTC	1 cut(s)	542
PkrI	GCNGC	2 cut(s)	112, 517
PleI	GAGTC	1 cut(s)	628
PpsI	GAGTC	1 cut(s)	628
PshAI	GACNNNNGTC	1 cut(s)	387
PshBI	ATTAAT	2 cut(s)	164, 294
PspN4I	GGNNCC	1 cut(s)	99
PstNI	CAGNNNCTG	2 cut(s)	116, 335
RsaI	GTAC	3 cut(s)	328, 371, 405
RsaNI	GTAC	3 cut(s)	327, 370, 404
SaqAI	TTAA	4 cut(s)	164, 255, 294, 488
SatI	GCNGC	2 cut(s)	111, 516
Sau3AI	GATC	2 cut(s)	174, 283
SchI	GAGTC	1 cut(s)	629
SetI	ASST	8 cut(s)	138, 152, 228, 252, 342, 369, 382, 391
SfaNI	GCATC	2 cut(s)	253, 454
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	3 cut(s)	192, 291, 312
SsiI	CCGC	3 cut(s)	4, 570, 643
SspI	AATATT	1 cut(s)	162
SspMI	CTAG	4 cut(s)	74, 227, 318, 567
TaaI	ACNGT	1 cut(s)	331
TaqI	TCGA	1 cut(s)	477
TasI	AATT	3 cut(s)	192, 291, 312
TatI	WGTACW	2 cut(s)	326, 403
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	4 cut(s)	164, 255, 294, 488
Tru9I	TTAA	4 cut(s)	164, 255, 294, 488
TscAI	CASTG	2 cut(s)	431, 541
TseFI	GTSAC	2 cut(s)	221, 229
TseI	GCWGC	2 cut(s)	110, 515
Tsp45I	GTSAC	2 cut(s)	221, 229
TspDTI	ATGAA	4 cut(s)	399, 507, 543, 555
TspGWI	ACGGA	1 cut(s)	136
TspRI	CASTG	2 cut(s)	431, 541
VspI	ATTAAT	2 cut(s)	164, 294
XagI	CCTNNNNNAGG	1 cut(s)	384
XspI	CTAG	4 cut(s)	74, 227, 318, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.