Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005535

Physical Location & Seq

Genomic Coordinates Reverse (-)

34091762 .. 34092031

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1266500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGTTCAGTTTTGGAGTGATTTTGATGGAGCTAATCACTGGGAAAAAGGCATTTGACGACAGCTGGCCTGAGGAGAGCATGCACTTAGTAACTTGGTTCCGGAAAATGTTCATTAACAAGGACTCATTCCGTAAGATGATTGATCCCACAATTGATCTCAACGAGGAAACACTTGCCAATGTGAGTACTGTTGCCGAGTTAGCAGGTCATTGCTGTGCAAGAGAGCCGTATCAAAAGCCTGACATGGGCCACACTGTGAATGTCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

90

Amino Acids

10.22

Weight (kDa)

5.21

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15321
malus_domestica	MD00G1049600.v1.1 MD09G1266500.v1.1 MD16G1015100.v1.1
pyrus_communis	pycom16g01410
rosa_chinensis	RchiOBHm_Chr4g0442251 RchiOBHm_Chr4g0442481
rosa_laevigata	RLG00000006008
rosa_multiflora	Rmu_co8215092.1_g000001 Rmu_co8349657.1_g000001 Rmu_sc0000124.1_g000059 Rmu_sc0004133.1_g000015 Rmu_sc0005621.1_g000018 Rmu_sc0010284.1_g000001 Rmu_ssc0000204.1_g000052
rosa_roxburghii	Rroxscaffold_5G00357610 Rroxscaffold_5G00383310
rosa_rugosa	Rorug01G0093400 Rorug01G0093500 Rorug04G0340000 Rorug04G0341100
rosa_samantha	Rh4AG391500 Rh4AG391600 Rh4BG405200 Rh4CG420300 Rh4CG421800 Rh4DG177000 Rh4DG398400 Rh4DG400100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	194
AccIII	TCCGGA	1 cut(s)	99
AclWI	GGATC	1 cut(s)	137
AdeI	CACNNNGTG	1 cut(s)	256
AfaI	GTAC	1 cut(s)	187
AfiI	CCNNNNNNNGG	1 cut(s)	245
AluBI	AGCT	2 cut(s)	31, 63
AluI	AGCT	2 cut(s)	31, 63
AlwI	GGATC	1 cut(s)	137
Aor13HI	TCCGGA	1 cut(s)	99
AoxI	GGCC	2 cut(s)	65, 247
Asp700I	GAANNNNTTC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	247
AxyI	CCTNAGG	1 cut(s)	69
BccI	CCATC	1 cut(s)	19
BceAI	ACGGC	1 cut(s)	211
BfuAI	ACCTGC	1 cut(s)	194
BmcAI	AGTACT	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	247
BmiI	GGNNCC	1 cut(s)	98
BmrI	ACTGGG	1 cut(s)	48
BmuI	ACTGGG	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
Bse1I	ACTGG	1 cut(s)	43
Bse21I	CCTNAGG	1 cut(s)	69
Bse3DI	GCAATG	1 cut(s)	208
BseAI	TCCGGA	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMI	GCAATG	1 cut(s)	208
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	86
BshFI	GGCC	2 cut(s)	67, 249
BsiSI	CCGG	1 cut(s)	100
BslI	CCNNNNNNNGG	1 cut(s)	245
BsnI	GGCC	2 cut(s)	67, 249
Bsp13I	TCCGGA	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	142, 154
BspANI	GGCC	2 cut(s)	67, 249
BspCNI	CTCAG	1 cut(s)	61
BspEI	TCCGGA	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	98
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	43
BssMI	GATC	2 cut(s)	142, 154
Bst4CI	ACNGT	2 cut(s)	190, 256
BstC8I	GCNNGC	2 cut(s)	65, 80
BstDEI	CTNAG	2 cut(s)	69, 85
BstKTI	GATC	2 cut(s)	145, 157
BstMBI	GATC	2 cut(s)	142, 154
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	82
Bsu36I	CCTNAGG	1 cut(s)	69
BsuRI	GGCC	2 cut(s)	67, 249
BtsIMutI	CAGTG	2 cut(s)	36, 252
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	2 cut(s)	65, 80
Cfr13I	GGNCC	1 cut(s)	247
Csp6I	GTAC	1 cut(s)	186
CviAII	CATG	2 cut(s)	79, 244
CviJI	RGCY	6 cut(s)	31, 63, 67, 226, 238, 249
CviKI_1	RGCY	6 cut(s)	31, 63, 67, 226, 238, 249
CviQI	GTAC	1 cut(s)	186
DdeI	CTNAG	2 cut(s)	69, 85
DpnI	GATC	2 cut(s)	144, 156
DpnII	GATC	2 cut(s)	142, 154
DraIII	CACNNNGTG	1 cut(s)	256
Eco81I	CCTNAGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	82, 247
FaiI	YATR	3 cut(s)	80, 245, 268
FatI	CATG	2 cut(s)	78, 243
HaeIII	GGCC	2 cut(s)	67, 249
HapII	CCGG	1 cut(s)	100
Hin1II	CATG	2 cut(s)	82, 247
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	1 cut(s)	100
Hpy188III	TCNNGA	1 cut(s)	100
HpyCH4III	ACNGT	2 cut(s)	190, 256
HpyCH4V	TGCA	2 cut(s)	82, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	2 cut(s)	69, 85
Hsp92II	CATG	2 cut(s)	82, 247
Kpn2I	TCCGGA	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	142, 154
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	6 cut(s)	24, 49, 81, 113, 189, 252
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	2 cut(s)	144, 156
MboI	GATC	2 cut(s)	142, 154
MfeI	CAATTG	1 cut(s)	150
MluCI	AATT	1 cut(s)	150
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	2 cut(s)	64, 157
MroI	TCCGGA	1 cut(s)	99
MroXI	GAANNNNTTC	1 cut(s)	107
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	63
MspI	CCGG	1 cut(s)	100
MunI	CAATTG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	2 cut(s)	142, 154
NlaIII	CATG	2 cut(s)	82, 247
NlaIV	GGNNCC	1 cut(s)	98
NmeAIII	GCCGAG	1 cut(s)	220
NspI	RCATGY	1 cut(s)	82
PaeI	GCATGC	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	98
PspPI	GGNCC	1 cut(s)	247
PvuII	CAGCTG	1 cut(s)	63
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
RseI	CAYNNNNRTG	1 cut(s)	213
SaqAI	TTAA	1 cut(s)	114
Sau3AI	GATC	2 cut(s)	142, 154
Sau96I	GGNCC	1 cut(s)	247
ScaI	AGTACT	1 cut(s)	187
SchI	GAGTC	1 cut(s)	116
SetI	ASST	3 cut(s)	33, 65, 208
SmiMI	CAYNNNNRTG	1 cut(s)	213
SphI	GCATGC	1 cut(s)	82
Sse9I	AATT	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	190, 256
TasI	AATT	1 cut(s)	150
TatI	WGTACW	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	2 cut(s)	43, 259
TspDTI	ATGAA	1 cut(s)	100
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	2 cut(s)	43, 259
XceI	RCATGY	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	107
ZrmI	AGTACT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.