Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005535

Physical Location & Seq

Genomic Coordinates Reverse (-)

9297466 .. 9299032

Gene Structure 1567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1049600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGCTGGAAGGTGGGGTAATCAGTAGTAAAGTATTTGATGGATTTCAGTCAGAAATTGCTGTTCTTTCCAAGGTTCGTCATCGACATCTGGTTTCTCCTTTGGGTTACTCCGTTGAAGGAAATGAAAGGCTTCTTGTCTACGACTTCAATCTGAAGCCATTATCTTGGACAAGGAGACTCATAATTCTGTTGGATGTTGCAAGAGCGATGGAATACCTACATAATTTAGCCTGCCAAACCTTCATACACCTAAATCTCAAATCTTCCAATATTCTTCTGGGTGATGACTTTCATGCAGAAGTTTCAGATTTTCGGTTGGTGAAACTTACTCCGGATGGGGAGAAGTCTGTTGTGGCTAAGCTTGCGGGGACATTTGGATACCTTGCACCTGAATATGCCTTGGTGGGGAAAATCACAACAAAAGCAGATGCGTTCAGCTTTGGAGTGGTGTTAATGGAACTTTTAACTGGATTGATGGCGCTTGATGAGAACTGGCCAGAGGAAAGCAGGTACTTGGCCGAGTGGTTTTGGCAAATAAAGTCAAGCAAGGAGAAGCTTGTGGCTGCAATTGATCCAACTCTTGAAGTAAAAGAAGAAACTTTTGAGAGCATCTCGATAATAGCTGAACTAGCTGGTCATTGCACAGCGAGGGAGCCAAGCCATCGGCCTGAAATGGGACATGCAGTGAATGTGTTGTCCCTACTTGTCGAAAAGTGGAAACCAGTTGAAGACGAATCCGATTGTCTCTCAGGGATTGATTACAACCACCCTCTACCTCAGATGTTAAAGGTTTGGAAAGAATCAGAAAGCCAAGGAGTCAGGTATATAGCCTTGAGGACAGCAAGGGCAGTATTCCTGCAAGGCCTAACGGATTTGCGGAGTCCTTCACTTCCGCAGATGGGCGATGAGAAATTGGTAAGTCCACAGAATCTATTGGCTCTTGCAGCACTAGTCTCTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

321

Amino Acids

35.77

Weight (kDa)

5.45

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	13 - 230	1.1e-21	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	14 - 229	1.2e-19	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15321
malus_domestica	MD00G1049600.v1.1 MD09G1266500.v1.1 MD16G1015100.v1.1
pyrus_communis	pycom16g01410
rosa_chinensis	RchiOBHm_Chr4g0442251 RchiOBHm_Chr4g0442481
rosa_laevigata	RLG00000006008
rosa_multiflora	Rmu_co8215092.1_g000001 Rmu_co8349657.1_g000001 Rmu_sc0000124.1_g000059 Rmu_sc0004133.1_g000015 Rmu_sc0005621.1_g000018 Rmu_sc0010284.1_g000001 Rmu_ssc0000204.1_g000052
rosa_roxburghii	Rroxscaffold_5G00357610 Rroxscaffold_5G00383310
rosa_rugosa	Rorug01G0093400 Rorug01G0093500 Rorug04G0340000 Rorug04G0341100
rosa_samantha	Rh4AG391500 Rh4AG391600 Rh4BG405200 Rh4CG420300 Rh4CG421800 Rh4DG177000 Rh4DG398400 Rh4DG400100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	498
AccI	GTMKAC	1 cut(s)	138
AccIII	TCCGGA	1 cut(s)	331
AciI	CCGC	3 cut(s)	365, 877, 893
AclWI	GGATC	1 cut(s)	566
AcoI	YGGCCR	2 cut(s)	494, 516
AcuI	CTGAAG	1 cut(s)	173
AfaI	GTAC	1 cut(s)	512
AfiI	CCNNNNNNNGG	3 cut(s)	405, 674, 899
AgsI	TTSAA	4 cut(s)	116, 148, 584, 728
AhlI	ACTAGT	1 cut(s)	949
AluBI	AGCT	5 cut(s)	361, 438, 556, 623, 632
AluI	AGCT	5 cut(s)	361, 438, 556, 623, 632
Alw26I	GTCTC	3 cut(s)	169, 749, 958
AlwI	GGATC	1 cut(s)	566
Aor13HI	TCCGGA	1 cut(s)	331
AoxI	GGCC	4 cut(s)	494, 516, 665, 862
ApeKI	GCWGC	2 cut(s)	563, 944
Asp700I	GAANNNNTTC	1 cut(s)	129
AspLEI	GCGC	1 cut(s)	481
AsuHPI	GGTGA	2 cut(s)	293, 331
BalI	TGGCCA	1 cut(s)	496
BbsI	GAAGAC	1 cut(s)	735
BbvI	GCAGC	2 cut(s)	550, 956
BccI	CCATC	6 cut(s)	32, 202, 329, 469, 669, 892
BciVI	GTATCC	1 cut(s)	371
BcoDI	GTCTC	3 cut(s)	169, 749, 958
BcuI	ACTAGT	1 cut(s)	949
BfaI	CTAG	2 cut(s)	629, 950
BfoI	RGCGCY	1 cut(s)	482
BfuAI	ACCTGC	1 cut(s)	498
BfuI	GTATCC	1 cut(s)	371
BisI	GCNGC	2 cut(s)	564, 945
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	2 cut(s)	565, 946
BmiI	GGNNCC	1 cut(s)	654
BmsI	GCATC	2 cut(s)	418, 618
BpiI	GAAGAC	1 cut(s)	735
BplI	GAGNNNNNCTC	2 cut(s)	596, 628
Bpu1102I	GCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	853
BsaJI	CCNNGG	3 cut(s)	69, 399, 811
BsaWI	WCCGGW	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	3 cut(s)	405, 674, 899
Bse1I	ACTGG	3 cut(s)	472, 497, 722
Bse3DI	GCAATG	1 cut(s)	637
BseAI	TCCGGA	1 cut(s)	331
BseDI	CCNNGG	3 cut(s)	69, 399, 811
BseGI	GGATG	2 cut(s)	199, 340
BseLI	CCNNNNNNNGG	3 cut(s)	405, 674, 899
BseMI	GCAATG	1 cut(s)	637
BseMII	CTCAG	2 cut(s)	762, 791
BseNI	ACTGG	3 cut(s)	472, 497, 722
BseXI	GCAGC	2 cut(s)	550, 956
BshFI	GGCC	4 cut(s)	496, 518, 667, 864
BsiSI	CCGG	1 cut(s)	332
BslFI	GGGAC	3 cut(s)	382, 682, 690
BslI	CCNNNNNNNGG	3 cut(s)	405, 674, 899
BsmAI	GTCTC	3 cut(s)	169, 749, 958
BsmFI	GGGAC	3 cut(s)	382, 682, 690
BsnI	GGCC	4 cut(s)	496, 518, 667, 864
Bsp13I	TCCGGA	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	571
Bsp1720I	GCTNAGC	1 cut(s)	357
BspACI	CCGC	3 cut(s)	365, 877, 893
BspANI	GGCC	4 cut(s)	496, 518, 667, 864
BspCNI	CTCAG	2 cut(s)	761, 790
BspEI	TCCGGA	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	654
BspMI	ACCTGC	1 cut(s)	498
BspPI	GGATC	1 cut(s)	566
BsrDI	GCAATG	1 cut(s)	637
BsrI	ACTGG	3 cut(s)	472, 497, 722
BssECI	CCNNGG	3 cut(s)	69, 399, 811
BssMI	GATC	1 cut(s)	571
BssT1I	CCWWGG	3 cut(s)	69, 399, 811
BstC8I	GCNNGC	2 cut(s)	232, 363
BstDEI	CTNAG	3 cut(s)	357, 748, 777
BstF5I	GGATG	2 cut(s)	199, 340
BstH2I	RGCGCY	1 cut(s)	482
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	1 cut(s)	574
BstMAI	GTCTC	3 cut(s)	169, 749, 958
BstMBI	GATC	1 cut(s)	571
BstMWI	GCNNNNNNNGC	3 cut(s)	362, 629, 944
BstNSI	RCATGY	1 cut(s)	683
BstV1I	GCAGC	2 cut(s)	550, 956
BstV2I	GAAGAC	1 cut(s)	735
BstXI	CCANNNNNNTGG	1 cut(s)	165
BsuI	GTATCC	1 cut(s)	371
BsuRI	GGCC	4 cut(s)	496, 518, 667, 864
BtgZI	GCGATG	2 cut(s)	221, 918
BtsCI	GGATG	2 cut(s)	199, 340
BtsI	GCAGTG	1 cut(s)	690
BtsIMutI	CAGTG	1 cut(s)	690
BveI	ACCTGC	1 cut(s)	498
Cac8I	GCNNGC	2 cut(s)	232, 363
CfoI	GCGC	1 cut(s)	481
Csp6I	GTAC	1 cut(s)	511
CviAII	CATG	2 cut(s)	293, 680
CviQI	GTAC	1 cut(s)	511
DdeI	CTNAG	3 cut(s)	357, 748, 777
DpnI	GATC	1 cut(s)	573
DpnII	GATC	1 cut(s)	571
EaeI	YGGCCR	2 cut(s)	494, 516
Eco130I	CCWWGG	3 cut(s)	69, 399, 811
Eco147I	AGGCCT	1 cut(s)	864
Eco57I	CTGAAG	1 cut(s)	173
EcoT14I	CCWWGG	3 cut(s)	69, 399, 811
ErhI	CCWWGG	3 cut(s)	69, 399, 811
FaeI	CATG	2 cut(s)	296, 683
FaiI	YATR	9 cut(s)	182, 222, 245, 294, 396, 681, 825, 827, 959
FaqI	GGGAC	3 cut(s)	382, 682, 690
FatI	CATG	2 cut(s)	292, 679
FauI	CCCGC	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	564, 945
FokI	GGATG	2 cut(s)	206, 347
Fsp4HI	GCNGC	2 cut(s)	564, 945
FspBI	CTAG	2 cut(s)	629, 950
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	2 cut(s)	564, 945
HaeII	RGCGCY	1 cut(s)	482
HaeIII	GGCC	4 cut(s)	496, 518, 667, 864
HapII	CCGG	1 cut(s)	332
HhaI	GCGC	1 cut(s)	481
Hin1II	CATG	2 cut(s)	296, 683
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HindIII	AAGCTT	2 cut(s)	359, 554
HinfI	GANTC	6 cut(s)	177, 734, 800, 816, 880, 928
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	2 cut(s)	293, 331
Hpy166II	GTNNAC	2 cut(s)	139, 923
Hpy188I	TCNGA	6 cut(s)	52, 153, 307, 739, 780, 805
Hpy188III	TCNNGA	3 cut(s)	332, 581, 613
Hpy8I	GTNNAC	2 cut(s)	139, 923
HpyAV	CCTTC	3 cut(s)	110, 250, 894
HpyCH4V	TGCA	8 cut(s)	200, 296, 386, 566, 642, 683, 859, 944
HpyF10VI	GCNNNNNNNGC	3 cut(s)	362, 629, 944
HpyF3I	CTNAG	3 cut(s)	357, 748, 777
Hsp92II	CATG	2 cut(s)	296, 683
HspAI	GCGC	1 cut(s)	479
Kpn2I	TCCGGA	1 cut(s)	331
Kzo9I	GATC	1 cut(s)	571
LmnI	GCTCC	1 cut(s)	652
Lsp1109I	GCAGC	2 cut(s)	550, 956
LweI	GCATC	2 cut(s)	418, 618
MaeI	CTAG	2 cut(s)	629, 950
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	1 cut(s)	573
MboI	GATC	1 cut(s)	571
MboII	GAAGA	4 cut(s)	255, 266, 605, 740
MfeI	CAATTG	1 cut(s)	567
MlsI	TGGCCA	1 cut(s)	496
MluCI	AATT	5 cut(s)	54, 183, 223, 567, 911
MluNI	TGGCCA	1 cut(s)	496
MlyI	GAGTC	3 cut(s)	171, 825, 889
MmeI	TCCRAC	2 cut(s)	171, 599
MnlI	CCTC	5 cut(s)	493, 642, 780, 786, 828
Mox20I	TGGCCA	1 cut(s)	496
MroI	TCCGGA	1 cut(s)	331
MroXI	GAANNNNTTC	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	496
MseI	TTAA	3 cut(s)	452, 464, 785
Msp20I	TGGCCA	1 cut(s)	496
MspI	CCGG	1 cut(s)	332
MunI	CAATTG	1 cut(s)	567
MwoI	GCNNNNNNNGC	3 cut(s)	362, 629, 944
NdeII	GATC	1 cut(s)	571
NlaIII	CATG	2 cut(s)	296, 683
NlaIV	GGNNCC	1 cut(s)	654
NmeAIII	GCCGAG	1 cut(s)	544
NspI	RCATGY	1 cut(s)	683
PceI	AGGCCT	1 cut(s)	864
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	3 cut(s)	734, 800, 928
PkrI	GCNGC	2 cut(s)	565, 946
PleI	GAGTC	3 cut(s)	171, 824, 888
PpsI	GAGTC	3 cut(s)	171, 824, 888
PspN4I	GGNNCC	1 cut(s)	654
RsaI	GTAC	1 cut(s)	512
RsaNI	GTAC	1 cut(s)	511
SaqAI	TTAA	3 cut(s)	452, 464, 785
SatI	GCNGC	2 cut(s)	564, 945
Sau3AI	GATC	1 cut(s)	571
SchI	GAGTC	3 cut(s)	171, 825, 889
SfaNI	GCATC	2 cut(s)	418, 618
SmlI	CTYRAG	1 cut(s)	832
SmoI	CTYRAG	1 cut(s)	832
SpeI	ACTAGT	1 cut(s)	949
Sse9I	AATT	5 cut(s)	54, 183, 223, 567, 911
SseBI	AGGCCT	1 cut(s)	864
SsiI	CCGC	3 cut(s)	365, 877, 893
SspI	AATATT	1 cut(s)	271
SspMI	CTAG	2 cut(s)	629, 950
StuI	AGGCCT	1 cut(s)	864
StyI	CCWWGG	3 cut(s)	69, 399, 811
TaqI	TCGA	3 cut(s)	82, 614, 708
TasI	AATT	5 cut(s)	54, 183, 223, 567, 911
TfiI	GAWTC	3 cut(s)	734, 800, 928
Tru1I	TTAA	3 cut(s)	452, 464, 785
Tru9I	TTAA	3 cut(s)	452, 464, 785
TscAI	CASTG	1 cut(s)	690
TseI	GCWGC	2 cut(s)	563, 944
TspDTI	ATGAA	3 cut(s)	138, 232, 281
TspGWI	ACGGA	2 cut(s)	100, 884
TspRI	CASTG	1 cut(s)	690
XceI	RCATGY	1 cut(s)	683
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XmiI	GTMKAC	1 cut(s)	138
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	2 cut(s)	629, 950

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.