Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000124.1

Orthogroup ID

OG0005535

Physical Location & Seq

Genomic Coordinates Reverse (-)

256820 .. 257317

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000124.1_g000059.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgctagaaattctcgtcaagttaagaaaagcaattgacgaaagccagcctgaggagagttgtcacctagtgacatggtttcgtagaaagatcattaaaacagatgcactcccagagatggttgatccaagaattaatgtcaatgaggaaacaatttctagtattagtacagttgctgagcttgctggtcattgcagcgcaagggagccgtaccaaaggcctgacataggtcatgcagtcaatgtactttcatcgcttgttgagcaatggaagccatctaagcaagaagatttggatgagatggatgcaatcaacttcgatgtgccgttaaatgaagcagtaaagatgtggcaggctgcggagggcaaaagcaacatagatgaatcctcatcttcatcgatctttcctagcgggcataccacccagaccagccttcctaatcggccttgtggatttgcagagtcgtttacatcatcagatgggcggtatagatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

165

Amino Acids

18.53

Weight (kDa)

4.92

Isoelectric Point (pI)

52.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15321
malus_domestica	MD00G1049600.v1.1 MD09G1266500.v1.1 MD16G1015100.v1.1
pyrus_communis	pycom16g01410
rosa_chinensis	RchiOBHm_Chr4g0442251 RchiOBHm_Chr4g0442481
rosa_laevigata	RLG00000006008
rosa_multiflora	Rmu_co8215092.1_g000001 Rmu_co8349657.1_g000001 Rmu_sc0000124.1_g000059 Rmu_sc0004133.1_g000015 Rmu_sc0005621.1_g000018 Rmu_sc0010284.1_g000001 Rmu_ssc0000204.1_g000052
rosa_roxburghii	Rroxscaffold_5G00357610 Rroxscaffold_5G00383310
rosa_rugosa	Rorug01G0093400 Rorug01G0093500 Rorug04G0340000 Rorug04G0341100
rosa_samantha	Rh4AG391500 Rh4AG391600 Rh4BG405200 Rh4CG420300 Rh4CG421800 Rh4DG177000 Rh4DG398400 Rh4DG400100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	359, 411, 484
AclWI	GGATC	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	9
AdeI	CACNNNGTG	1 cut(s)	70
AfaI	GTAC	3 cut(s)	169, 212, 246
AfiI	CCNNNNNNNGG	3 cut(s)	52, 118, 227
AluBI	AGCT	1 cut(s)	181
AluI	AGCT	1 cut(s)	181
AlwI	GGATC	1 cut(s)	119
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	2 cut(s)	218, 443
ApeKI	GCWGC	2 cut(s)	195, 356
ApoI	RAATTY	1 cut(s)	9
AseI	ATTAAT	1 cut(s)	135
AspLEI	GCGC	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	56
AxyI	CCTNAGG	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	207, 343
BccI	CCATC	4 cut(s)	112, 283, 295, 473
BceAI	ACGGC	2 cut(s)	193, 310
BfaI	CTAG	4 cut(s)	5, 68, 159, 408
BisI	GCNGC	2 cut(s)	196, 357
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	2 cut(s)	197, 358
BmiI	GGNNCC	1 cut(s)	207
BmsI	GCATC	2 cut(s)	94, 295
BoxI	GACNNNNGTC	1 cut(s)	228
Bpu1102I	GCTNAGC	1 cut(s)	177
Bsa29I	ATCGAT	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 118, 227
Bse21I	CCTNAGG	1 cut(s)	51
Bse3DI	GCAATG	2 cut(s)	190, 272
BseCI	ATCGAT	1 cut(s)	398
BseGI	GGATG	2 cut(s)	301, 310
BseLI	CCNNNNNNNGG	3 cut(s)	52, 118, 227
BseMI	GCAATG	2 cut(s)	190, 272
BseMII	CTCAG	2 cut(s)	42, 168
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	207, 343
BshFI	GGCC	2 cut(s)	220, 445
BshVI	ATCGAT	1 cut(s)	398
BslI	CCNNNNNNNGG	3 cut(s)	52, 118, 227
BsnI	GGCC	2 cut(s)	220, 445
Bsp143I	GATC	3 cut(s)	90, 124, 399
Bsp1720I	GCTNAGC	1 cut(s)	177
BspACI	CCGC	3 cut(s)	359, 411, 484
BspANI	GGCC	2 cut(s)	220, 445
BspCNI	CTCAG	2 cut(s)	43, 169
BspDI	ATCGAT	1 cut(s)	398
BspLI	GGNNCC	1 cut(s)	207
BspPI	GGATC	1 cut(s)	119
BsrDI	GCAATG	2 cut(s)	190, 272
BssMI	GATC	3 cut(s)	90, 124, 399
Bst4CI	ACNGT	1 cut(s)	172
BstC8I	GCNNGC	4 cut(s)	47, 183, 354, 413
BstDEI	CTNAG	3 cut(s)	51, 177, 279
BstENI	CCTNNNNNAGG	1 cut(s)	225
BstF5I	GGATG	2 cut(s)	301, 310
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	3 cut(s)	93, 127, 402
BstMBI	GATC	3 cut(s)	90, 124, 399
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 262, 271, 280
BstPAI	GACNNNNGTC	1 cut(s)	228
BstV1I	GCAGC	2 cut(s)	207, 343
Bsu15I	ATCGAT	1 cut(s)	398
Bsu36I	CCTNAGG	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	220, 445
BsuTUI	ATCGAT	1 cut(s)	398
BtgZI	GCGATG	1 cut(s)	237
BtsCI	GGATG	2 cut(s)	301, 310
Cac8I	GCNNGC	4 cut(s)	47, 183, 354, 413
CaiI	CAGNNNCTG	1 cut(s)	176
CfoI	GCGC	1 cut(s)	200
ClaI	ATCGAT	1 cut(s)	398
Csp6I	GTAC	3 cut(s)	168, 211, 245
CviAII	CATG	2 cut(s)	75, 233
CviJI	RGCY	9 cut(s)	45, 49, 181, 208, 220, 274, 356, 432, 445
CviKI_1	RGCY	9 cut(s)	45, 49, 181, 208, 220, 274, 356, 432, 445
CviQI	GTAC	3 cut(s)	168, 211, 245
DdeI	CTNAG	3 cut(s)	51, 177, 279
DpnI	GATC	3 cut(s)	92, 126, 401
DpnII	GATC	3 cut(s)	90, 124, 399
DraIII	CACNNNGTG	1 cut(s)	70
Eco147I	AGGCCT	1 cut(s)	220
Eco81I	CCTNAGG	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	225
FaeI	CATG	2 cut(s)	78, 236
FaiI	YATR	6 cut(s)	76, 227, 234, 377, 417, 489
FatI	CATG	2 cut(s)	74, 232
FauI	CCCGC	1 cut(s)	404
Fnu4HI	GCNGC	2 cut(s)	196, 357
FokI	GGATG	2 cut(s)	308, 317
Fsp4HI	GCNGC	2 cut(s)	196, 357
FspBI	CTAG	4 cut(s)	5, 68, 159, 408
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	2 cut(s)	196, 357
HaeIII	GGCC	2 cut(s)	220, 445
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	2 cut(s)	78, 236
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HinfI	GANTC	2 cut(s)	383, 461
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	468
Hpy188I	TCNGA	1 cut(s)	478
Hpy8I	GTNNAC	1 cut(s)	468
HpyAV	CCTTC	1 cut(s)	443
HpyCH4III	ACNGT	1 cut(s)	172
HpyCH4V	TGCA	5 cut(s)	107, 195, 236, 308, 458
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 262, 271, 280
HpyF3I	CTNAG	3 cut(s)	51, 177, 279
Hsp92II	CATG	2 cut(s)	78, 236
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	3 cut(s)	90, 124, 399
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	8 cut(s)	59, 63, 126, 171, 234, 338, 437, 442
Lsp1109I	GCAGC	2 cut(s)	207, 343
LweI	GCATC	2 cut(s)	94, 295
MaeI	CTAG	4 cut(s)	5, 68, 159, 408
MaeIII	GTNAC	2 cut(s)	62, 70
MalI	GATC	3 cut(s)	92, 126, 401
MboI	GATC	3 cut(s)	90, 124, 399
MboII	GAAGA	2 cut(s)	299, 384
MfeI	CAATTG	1 cut(s)	33
MluCI	AATT	4 cut(s)	9, 33, 132, 153
MlyI	GAGTC	1 cut(s)	470
MnlI	CCTC	4 cut(s)	46, 139, 355, 397
MseI	TTAA	4 cut(s)	23, 96, 135, 329
MunI	CAATTG	1 cut(s)	33
MwoI	GCNNNNNNNGC	4 cut(s)	182, 262, 271, 280
NdeII	GATC	3 cut(s)	90, 124, 399
NlaIII	CATG	2 cut(s)	78, 236
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	2 cut(s)	62, 70
PceI	AGGCCT	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	2 cut(s)	197, 358
PleI	GAGTC	1 cut(s)	469
PpsI	GAGTC	1 cut(s)	469
PshAI	GACNNNNGTC	1 cut(s)	228
PshBI	ATTAAT	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	207
PstNI	CAGNNNCTG	1 cut(s)	176
RsaI	GTAC	3 cut(s)	169, 212, 246
RsaNI	GTAC	3 cut(s)	168, 211, 245
SaqAI	TTAA	4 cut(s)	23, 96, 135, 329
SatI	GCNGC	2 cut(s)	196, 357
Sau3AI	GATC	3 cut(s)	90, 124, 399
SchI	GAGTC	1 cut(s)	470
SetI	ASST	3 cut(s)	69, 183, 232
SfaNI	GCATC	2 cut(s)	94, 295
Sse9I	AATT	4 cut(s)	9, 33, 132, 153
SseBI	AGGCCT	1 cut(s)	220
SsiI	CCGC	3 cut(s)	359, 411, 484
SspMI	CTAG	4 cut(s)	5, 68, 159, 408
StuI	AGGCCT	1 cut(s)	220
TaaI	ACNGT	1 cut(s)	172
TaqI	TCGA	2 cut(s)	318, 398
TasI	AATT	4 cut(s)	9, 33, 132, 153
TatI	WGTACW	2 cut(s)	167, 244
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	4 cut(s)	23, 96, 135, 329
Tru9I	TTAA	4 cut(s)	23, 96, 135, 329
TseFI	GTSAC	2 cut(s)	62, 70
TseI	GCWGC	2 cut(s)	195, 356
Tsp45I	GTSAC	2 cut(s)	62, 70
TspDTI	ATGAA	4 cut(s)	240, 348, 384, 396
VspI	ATTAAT	1 cut(s)	135
XagI	CCTNNNNNAGG	1 cut(s)	225
XapI	RAATTY	1 cut(s)	9
XspI	CTAG	4 cut(s)	5, 68, 159, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.